Wall clock time and date at job start Tue Mar 31 2020 14:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.53001 * 109.47009 * 240.00082 * 2 1 3 5 5 C 1.53002 * 109.47156 * 175.00065 * 4 2 1 6 6 N 1.46499 * 109.47203 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99683 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00332 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00039 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99892 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00303 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47393 * 90.00225 * 11 9 7 13 13 H 1.48509 * 109.47241 * 210.00066 * 11 9 7 14 14 H 1.48502 * 109.47269 * 329.99410 * 11 9 7 15 15 N 1.46492 * 109.47311 * 120.00166 * 2 1 3 16 16 C 1.34782 * 119.99872 * 275.00184 * 15 2 1 17 17 O 1.21508 * 120.00329 * 359.97438 * 16 15 2 18 18 C 1.48163 * 119.99727 * 179.97438 * 16 15 2 19 19 C 1.40171 * 121.00325 * 359.97214 * 18 16 15 20 20 C 1.38024 * 118.70779 * 179.97438 * 19 18 16 21 21 N 1.31664 * 121.42850 * 0.02562 * 20 19 18 22 22 C 1.32944 * 122.26081 * 0.02562 * 21 20 19 23 23 C 1.38887 * 120.99732 * 179.97438 * 18 16 15 24 24 C 1.50956 * 133.29273 * 0.02562 * 23 18 16 25 25 C 1.51444 * 103.92190 * 179.97438 * 24 23 18 26 26 O 1.21270 * 126.45258 * 179.97438 * 25 24 23 27 27 N 1.34354 * 107.09087 * 359.97438 * 25 24 23 28 28 H 1.09003 * 109.47050 * 300.00247 * 1 2 3 29 29 H 1.09000 * 109.46869 * 60.00316 * 1 2 3 30 30 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47209 * 294.99806 * 4 2 1 32 32 H 1.09003 * 109.47101 * 55.00348 * 4 2 1 33 33 H 1.09001 * 109.46850 * 299.99960 * 5 4 2 34 34 H 1.09000 * 109.47371 * 59.99346 * 5 4 2 35 35 H 0.96998 * 120.00190 * 0.02562 * 6 5 4 36 36 H 0.96998 * 120.00307 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00166 * 94.99653 * 15 2 1 38 38 H 1.07992 * 120.64983 * 0.03745 * 19 18 16 39 39 H 1.07995 * 119.28440 * 180.30233 * 20 19 18 40 40 H 1.09000 * 110.53834 * 61.38749 * 24 23 18 41 41 H 1.09002 * 110.65950 * 298.66612 * 24 23 18 42 42 H 0.96992 * 123.78883 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3952 -1.3401 -2.7796 8 1 6.0937 -0.8599 -2.1103 9 6 5.8580 -1.9943 -3.9131 10 7 5.0067 -2.5791 -4.7291 11 14 7.6888 -2.0450 -4.2803 12 1 8.2879 -3.2463 -3.6454 13 1 7.8975 -2.1055 -5.7494 14 1 8.3364 -0.8235 -3.7382 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0182 2.3571 17 8 1.8585 1.1608 2.4116 18 6 2.6404 -0.7169 3.5669 19 6 2.9788 -2.0766 3.5279 20 6 3.4341 -2.6799 4.6829 21 7 3.5538 -2.0065 5.8079 22 6 3.2457 -0.7164 5.8990 23 6 2.7815 -0.0442 4.7738 24 6 2.5264 1.3812 5.2004 25 6 2.9034 1.3956 6.6671 26 8 2.8532 2.3492 7.4146 27 7 3.3040 0.1529 6.9840 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0727 -0.4260 35 1 3.4258 -1.7343 -3.1116 36 1 5.3299 -3.0360 -5.5213 37 1 2.2490 -1.6318 1.1525 38 1 2.8861 -2.6409 2.6119 39 1 3.7021 -3.7258 4.6622 40 1 1.4742 1.6357 5.0739 41 1 3.1558 2.0698 4.6366 42 1 3.6012 -0.1086 7.8695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699111914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:23 Heat of formation + Delta-G solvation = -12.832335 kcal Electronic energy + Delta-G solvation = -25768.120740 eV Core-core repulsion = 21941.678314 eV Total energy + Delta-G solvation = -3826.442426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19887 -40.14534 -39.14877 -36.69664 -36.49058 -34.46633 -33.71373 -32.17156 -31.13125 -30.30807 -28.84784 -27.95268 -25.06686 -24.02398 -23.08040 -22.00439 -21.70098 -21.15078 -20.65946 -18.82440 -17.75323 -17.35602 -17.07903 -16.66449 -16.39580 -15.57563 -15.46729 -15.17230 -14.70199 -14.52472 -14.38205 -14.12610 -13.84957 -13.80394 -13.54795 -13.40805 -13.12666 -12.90616 -12.72961 -12.50229 -11.96697 -11.48080 -11.29187 -11.09535 -10.86507 -10.77420 -10.70256 -10.63516 -10.46321 -10.18596 -10.09609 -9.82021 -9.75391 -9.18873 -8.91910 -8.79649 -6.98423 -5.81993 -3.11086 0.25573 0.47324 1.91369 2.16852 2.65992 2.84947 3.40012 3.41305 3.45777 3.47286 3.49777 3.95071 4.13971 4.20631 4.33729 4.52198 4.69133 4.84655 4.95360 5.07172 5.11838 5.21161 5.24917 5.38983 5.49270 5.50622 5.63471 5.65632 5.81263 5.83816 5.92482 6.03438 6.14499 6.18558 6.25269 6.28915 6.36258 6.72530 6.77462 7.23963 7.30991 7.51231 7.65221 7.96073 8.36996 9.48256 10.05188 10.39643 11.40821 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.002768 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.104902 B =10112.515303 C =10922.908697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.136 4.136 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.707 5.707 16 C 0.557 3.443 17 O -0.527 6.527 18 C -0.035 4.035 19 C -0.161 4.161 20 C 0.141 3.859 21 N -0.490 5.490 22 C 0.347 3.653 23 C -0.132 4.132 24 C -0.106 4.106 25 C 0.537 3.463 26 O -0.492 6.492 27 N -0.645 5.645 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.403 0.597 38 H 0.152 0.848 39 H 0.175 0.825 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 0.614 19.830 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.358 5.358 16 C 0.342 3.658 17 O -0.404 6.404 18 C -0.046 4.046 19 C -0.183 4.183 20 C -0.016 4.016 21 N -0.205 5.205 22 C 0.115 3.885 23 C -0.138 4.138 24 C -0.145 4.145 25 C 0.324 3.676 26 O -0.364 6.364 27 N -0.292 5.292 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.239 0.761 38 H 0.169 0.831 39 H 0.192 0.808 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.108 1.747 20.936 22.898 hybrid contribution 0.908 -0.664 -0.828 1.397 sum -8.200 1.083 20.107 21.742 Atomic orbital electron populations 1.22167 0.95121 1.02173 1.02509 1.21070 0.93746 0.97815 0.83307 0.88988 1.22085 0.98135 1.00858 0.96323 1.20637 0.90269 0.95715 0.90782 1.42357 1.05391 1.65017 1.25035 1.19219 0.83801 1.28606 1.05564 0.91248 1.24743 0.97736 1.00842 0.97611 1.69656 1.32816 1.40675 1.15084 0.86193 0.85058 0.77714 0.77254 1.21675 1.21718 1.20735 1.46039 1.66054 1.14348 1.09382 1.18043 0.78289 0.86541 0.82889 1.90773 1.49731 1.15047 1.84813 1.19616 0.98501 0.93703 0.92758 1.22350 1.01074 0.93825 1.01068 1.22490 0.93542 0.99794 0.85818 1.66613 1.18198 1.05831 1.29858 1.18252 0.94919 0.88664 0.86642 1.20396 1.03272 0.97044 0.93078 1.21064 1.06655 0.94565 0.92207 1.20663 0.75303 0.80930 0.90697 1.90845 1.52552 1.35448 1.57573 1.43532 1.63741 1.09761 1.12201 0.92327 0.91288 0.92402 0.91237 0.89990 0.96392 0.96454 0.78295 0.93471 0.76144 0.83084 0.80831 0.84785 0.84639 0.74216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.69 2.57 -67.93 -0.17 1.52 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 4 C -0.14 -1.86 4.87 -26.73 -0.13 -1.99 16 5 C 0.15 2.85 6.15 -4.04 -0.02 2.83 16 6 N -0.73 -17.79 5.60 -59.91 -0.34 -18.12 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 11 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 N -0.71 -7.42 4.49 -54.65 -0.25 -7.67 16 16 C 0.56 6.43 7.76 -12.18 -0.09 6.34 16 17 O -0.53 -7.43 15.30 5.36 0.08 -7.35 16 18 C -0.03 -0.34 5.89 -104.86 -0.62 -0.96 16 19 C -0.16 -1.21 9.64 -38.93 -0.38 -1.59 16 20 C 0.14 1.03 11.14 -17.70 -0.20 0.84 16 21 N -0.49 -4.60 10.36 -12.37 -0.13 -4.72 16 22 C 0.35 3.34 8.27 -154.44 -1.28 2.06 16 23 C -0.13 -1.31 6.17 -103.96 -0.64 -1.95 16 24 C -0.11 -0.99 5.63 -28.54 -0.16 -1.15 16 25 C 0.54 5.44 8.71 -10.81 -0.09 5.34 16 26 O -0.49 -6.45 18.03 5.57 0.10 -6.35 16 27 N -0.65 -5.59 5.85 -11.21 -0.07 -5.65 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.32 7.75 -51.93 -0.40 -0.08 16 35 H 0.38 9.72 7.67 -40.82 -0.31 9.40 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.40 3.49 6.76 -40.82 -0.28 3.21 16 38 H 0.15 0.79 6.56 -52.49 -0.34 0.45 16 39 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.42 2.83 8.96 -40.82 -0.37 2.46 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -34.23 359.97 -8.60 -42.82 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.45 Total: 8.71 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.68 Total: 2.80 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.05 Total: -63.04 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.18 Total: -13.70 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.23 -8.60 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699111914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.991 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds