Wall clock time and date at job start Tue Mar 31 2020 14:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.53001 * 109.47009 * 240.00082 * 2 1 3 5 5 C 1.53002 * 109.47156 * 175.00065 * 4 2 1 6 6 N 1.46499 * 109.47203 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99683 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00332 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00039 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99892 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00303 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47393 * 90.00225 * 11 9 7 13 13 H 1.48509 * 109.47241 * 210.00066 * 11 9 7 14 14 H 1.48502 * 109.47269 * 329.99410 * 11 9 7 15 15 N 1.46492 * 109.47311 * 120.00166 * 2 1 3 16 16 C 1.34782 * 119.99872 * 275.00184 * 15 2 1 17 17 O 1.21508 * 120.00329 * 359.97438 * 16 15 2 18 18 C 1.48163 * 119.99727 * 179.97438 * 16 15 2 19 19 C 1.40171 * 121.00325 * 359.97214 * 18 16 15 20 20 C 1.38024 * 118.70779 * 179.97438 * 19 18 16 21 21 N 1.31664 * 121.42850 * 0.02562 * 20 19 18 22 22 C 1.32944 * 122.26081 * 0.02562 * 21 20 19 23 23 C 1.38887 * 120.99732 * 179.97438 * 18 16 15 24 24 C 1.50956 * 133.29273 * 0.02562 * 23 18 16 25 25 C 1.51444 * 103.92190 * 179.97438 * 24 23 18 26 26 O 1.21270 * 126.45258 * 179.97438 * 25 24 23 27 27 N 1.34354 * 107.09087 * 359.97438 * 25 24 23 28 28 H 1.09003 * 109.47050 * 300.00247 * 1 2 3 29 29 H 1.09000 * 109.46869 * 60.00316 * 1 2 3 30 30 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47209 * 294.99806 * 4 2 1 32 32 H 1.09003 * 109.47101 * 55.00348 * 4 2 1 33 33 H 1.09001 * 109.46850 * 299.99960 * 5 4 2 34 34 H 1.09000 * 109.47371 * 59.99346 * 5 4 2 35 35 H 0.96998 * 120.00190 * 0.02562 * 6 5 4 36 36 H 0.96998 * 120.00307 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00166 * 94.99653 * 15 2 1 38 38 H 1.07992 * 120.64983 * 0.03745 * 19 18 16 39 39 H 1.07995 * 119.28440 * 180.30233 * 20 19 18 40 40 H 1.09000 * 110.53834 * 61.38749 * 24 23 18 41 41 H 1.09002 * 110.65950 * 298.66612 * 24 23 18 42 42 H 0.96992 * 123.78883 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3952 -1.3401 -2.7796 8 1 6.0937 -0.8599 -2.1103 9 6 5.8580 -1.9943 -3.9131 10 7 5.0067 -2.5791 -4.7291 11 14 7.6888 -2.0450 -4.2803 12 1 8.2879 -3.2463 -3.6454 13 1 7.8975 -2.1055 -5.7494 14 1 8.3364 -0.8235 -3.7382 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0182 2.3571 17 8 1.8585 1.1608 2.4116 18 6 2.6404 -0.7169 3.5669 19 6 2.9788 -2.0766 3.5279 20 6 3.4341 -2.6799 4.6829 21 7 3.5538 -2.0065 5.8079 22 6 3.2457 -0.7164 5.8990 23 6 2.7815 -0.0442 4.7738 24 6 2.5264 1.3812 5.2004 25 6 2.9034 1.3956 6.6671 26 8 2.8532 2.3492 7.4146 27 7 3.3040 0.1529 6.9840 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0727 -0.4260 35 1 3.4258 -1.7343 -3.1116 36 1 5.3299 -3.0360 -5.5213 37 1 2.2490 -1.6318 1.1525 38 1 2.8861 -2.6409 2.6119 39 1 3.7021 -3.7258 4.6622 40 1 1.4742 1.6357 5.0739 41 1 3.1558 2.0698 4.6366 42 1 3.6012 -0.1086 7.8695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699111914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:23 Heat of formation + Delta-G solvation = -37.520652 kcal Electronic energy + Delta-G solvation = -25769.191306 eV Core-core repulsion = 21941.678314 eV Total energy + Delta-G solvation = -3827.512992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.93633 -41.03375 -39.96378 -37.86948 -37.28635 -36.10326 -34.49840 -33.57761 -32.39993 -31.20933 -29.59526 -29.35547 -26.04687 -25.57999 -23.87262 -23.19899 -22.63552 -22.18652 -21.62161 -19.70389 -19.07182 -18.52103 -18.06130 -17.45400 -17.32808 -16.69147 -16.32415 -16.20948 -16.03455 -15.47631 -15.35971 -15.24875 -15.18723 -14.88320 -14.72280 -14.48605 -14.23181 -13.91743 -13.58379 -13.37803 -13.07899 -12.86907 -12.85325 -12.35819 -12.25376 -12.22130 -11.96958 -11.90730 -11.61936 -11.58464 -11.34510 -10.93760 -10.92102 -10.57294 -10.10729 -9.48692 -8.98175 -7.94679 -5.22941 -0.47630 -0.20937 1.13480 1.46353 1.49121 1.49954 1.58378 1.82396 1.99314 2.56769 2.70447 2.77195 3.22531 3.39462 3.40857 3.55186 3.63466 3.67868 4.08395 4.11541 4.21056 4.28547 4.32497 4.41083 4.53093 4.60976 4.68174 4.72116 4.81729 4.86131 4.90285 5.04112 5.18166 5.23757 5.32005 5.33835 5.37928 5.50787 5.53623 5.60384 6.28413 6.46425 6.53911 6.80551 7.10257 7.35289 8.11347 8.34402 9.28583 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.002768 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.104902 B =10112.515303 C =10922.908697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.073 0.927 4 C -0.120 4.120 5 C 0.152 3.848 6 N -0.745 5.745 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.969 3.031 12 H -0.284 1.284 13 H -0.296 1.296 14 H -0.273 1.273 15 N -0.700 5.700 16 C 0.557 3.443 17 O -0.558 6.558 18 C -0.047 4.047 19 C -0.149 4.149 20 C 0.144 3.856 21 N -0.500 5.500 22 C 0.336 3.664 23 C -0.144 4.144 24 C -0.102 4.102 25 C 0.542 3.458 26 O -0.527 6.527 27 N -0.636 5.636 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.005 0.995 34 H 0.027 0.973 35 H 0.376 0.624 36 H 0.252 0.748 37 H 0.413 0.587 38 H 0.178 0.822 39 H 0.210 0.790 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -0.854 20.293 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.158 4.158 5 C 0.026 3.974 6 N -0.388 5.388 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.798 3.202 12 H -0.211 1.211 13 H -0.222 1.222 14 H -0.199 1.199 15 N -0.352 5.352 16 C 0.343 3.657 17 O -0.437 6.437 18 C -0.058 4.058 19 C -0.170 4.170 20 C -0.014 4.014 21 N -0.215 5.215 22 C 0.105 3.895 23 C -0.150 4.150 24 C -0.141 4.141 25 C 0.330 3.670 26 O -0.402 6.402 27 N -0.283 5.283 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.023 0.977 34 H 0.045 0.955 35 H 0.208 0.792 36 H 0.061 0.939 37 H 0.251 0.749 38 H 0.195 0.805 39 H 0.227 0.773 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.984 0.257 21.437 23.245 hybrid contribution 0.863 -0.249 -0.962 1.317 sum -8.121 0.008 20.474 22.026 Atomic orbital electron populations 1.22091 0.93385 1.03159 1.02570 1.20881 0.94938 0.96567 0.82793 0.90852 1.21916 0.94515 1.02004 0.97346 1.20794 0.93540 0.94175 0.88899 1.42558 1.04387 1.65334 1.26541 1.19581 0.85361 1.27510 1.05291 0.91076 1.25504 1.01719 1.01353 0.97873 1.69793 1.34481 1.41960 1.15535 0.85207 0.80449 0.77967 0.76545 1.21084 1.22246 1.19861 1.45948 1.65702 1.14794 1.08766 1.18294 0.77724 0.86224 0.83444 1.90760 1.51144 1.16465 1.85331 1.19577 0.99632 0.94730 0.91851 1.22670 0.99329 0.92758 1.02247 1.23139 0.92212 1.01078 0.84940 1.66691 1.18272 1.05573 1.30953 1.18301 0.95606 0.88995 0.86576 1.20467 1.03909 0.97121 0.93527 1.21006 1.06771 0.94725 0.91634 1.20661 0.74757 0.80849 0.90696 1.90824 1.54295 1.36623 1.58439 1.43391 1.63046 1.09236 1.12602 0.92918 0.90613 0.90922 0.89873 0.90137 0.97678 0.95467 0.79203 0.93940 0.74857 0.80493 0.77334 0.84460 0.84930 0.73229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.48 71.98 0.68 -2.09 16 2 C 0.15 3.33 2.57 44.99 0.12 3.45 16 3 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 4 C -0.12 -3.08 4.87 30.60 0.15 -2.93 16 5 C 0.15 5.47 6.15 86.38 0.53 6.01 16 6 N -0.75 -35.64 5.60 -343.44 -1.92 -37.56 16 7 C -0.25 -13.27 9.99 84.03 0.84 -12.43 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 10 N -0.97 -57.20 13.06 21.65 0.28 -56.92 16 11 Si 0.97 44.88 29.55 68.60 2.03 46.90 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 N -0.70 -13.32 4.49 -445.12 -2.00 -15.32 16 16 C 0.56 12.20 7.76 86.88 0.67 12.88 16 17 O -0.56 -15.63 15.30 -3.74 -0.06 -15.69 16 18 C -0.05 -0.84 5.89 -20.02 -0.12 -0.96 16 19 C -0.15 -1.79 9.64 22.69 0.22 -1.57 16 20 C 0.14 1.65 11.14 84.67 0.94 2.59 16 21 N -0.50 -8.31 10.36 -193.05 -2.00 -10.31 16 22 C 0.34 6.10 8.27 132.83 1.10 7.20 16 23 C -0.14 -2.76 6.17 -19.43 -0.12 -2.88 16 24 C -0.10 -1.95 5.63 29.42 0.17 -1.78 16 25 C 0.54 11.15 8.71 87.96 0.77 11.92 16 26 O -0.53 -14.20 18.03 -3.00 -0.05 -14.26 16 27 N -0.64 -10.76 5.85 -308.01 -1.80 -12.56 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.03 0.94 7.75 -2.39 -0.02 0.92 16 35 H 0.38 18.91 7.67 -92.71 -0.71 18.20 16 36 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.41 5.94 6.76 -92.71 -0.63 5.31 16 38 H 0.18 1.13 6.56 -2.91 -0.02 1.11 16 39 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.43 5.58 8.96 -92.71 -0.83 4.75 16 Total: -1.00 -73.29 359.97 -0.19 -73.48 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -1.08 Total: 26.38 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.41 Total: 15.85 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -7.44 Total: -132.67 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.11 Total: -29.95 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.29 -0.19 -73.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699111914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.958 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds