Wall clock time and date at job start Tue Mar 31 2020 13:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00260 * 2 1 4 4 O 1.42900 * 109.47076 * 135.00105 * 3 2 1 5 5 C 1.42894 * 113.99956 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.21271 * 119.99947 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99720 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99676 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47195 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.49324 * 54.93537 * 10 9 8 12 12 C 1.53195 * 109.49867 * 294.84166 * 10 9 8 13 13 N 1.46923 * 108.77760 * 185.41146 * 12 10 9 14 14 C 1.36934 * 120.63020 * 233.58755 * 13 12 10 15 15 H 1.08003 * 119.99615 * 152.78890 * 14 13 12 16 16 C 1.38812 * 120.00389 * 332.78603 * 14 13 12 17 17 N 1.31616 * 120.00243 * 159.74452 * 16 14 13 18 18 Si 1.86803 * 119.99729 * 339.74740 * 16 14 13 19 19 H 1.48498 * 109.46840 * 94.90401 * 18 16 14 20 20 H 1.48503 * 109.46840 * 214.89975 * 18 16 14 21 21 H 1.48490 * 109.47061 * 334.90383 * 18 16 14 22 22 C 1.46930 * 118.73623 * 53.60800 * 13 12 10 23 23 C 1.53196 * 108.77515 * 306.39213 * 22 13 12 24 24 C 1.53035 * 109.31110 * 54.63727 * 23 22 13 25 25 F 1.39897 * 109.45845 * 178.61390 * 24 23 22 26 26 F 1.39890 * 109.45371 * 58.64728 * 24 23 22 27 27 H 1.07998 * 119.99708 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00172 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00192 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46667 * 15.00262 * 3 2 1 31 31 H 1.08997 * 109.46900 * 255.00351 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00523 * 5 4 3 33 33 H 1.09004 * 109.46956 * 60.00147 * 5 4 3 34 34 H 0.97000 * 120.00238 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47506 * 300.00460 * 9 8 6 36 36 H 1.09002 * 109.46556 * 59.99901 * 9 8 6 37 37 H 1.08999 * 109.58683 * 305.20163 * 12 10 9 38 38 H 1.09008 * 109.58540 * 65.62232 * 12 10 9 39 39 H 0.96998 * 120.00219 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.58433 * 186.60228 * 22 13 12 41 41 H 1.08995 * 109.58676 * 66.18372 * 22 13 12 42 42 H 1.09004 * 109.49585 * 294.68117 * 23 22 13 43 43 H 1.09000 * 109.52215 * 174.60509 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9078 2.4351 1.0328 6 6 4.9942 2.2566 2.0619 7 8 5.0904 1.2098 2.6667 8 7 5.8588 3.2603 2.3101 9 6 6.9146 3.0869 3.3109 10 6 7.7509 4.3652 3.3967 11 1 7.0976 5.2146 3.5959 12 6 8.4865 4.5849 2.0710 13 7 9.3829 5.7402 2.2134 14 6 9.3228 6.7832 1.3281 15 1 9.6212 7.7734 1.6393 16 6 8.8784 6.5678 0.0308 17 7 8.4411 7.5776 -0.6912 18 14 8.9011 4.8446 -0.6901 19 1 7.5699 4.2131 -0.5050 20 1 9.2166 4.9186 -2.1394 21 1 9.9346 4.0326 0.0008 22 6 10.3455 5.7549 3.3234 23 6 9.5890 5.5221 4.6351 24 6 8.7740 4.2314 4.5270 25 9 8.1067 3.9991 5.7344 26 9 9.6316 3.1602 4.2550 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3855 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 4.3580 2.6408 0.0617 33 1 3.2678 3.2693 1.3206 34 1 5.7816 4.0977 1.8266 35 1 6.4645 2.8809 4.2820 36 1 7.5547 2.2529 3.0229 37 1 9.0701 3.6976 1.8255 38 1 7.7628 4.7792 1.2794 39 1 8.1309 7.4271 -1.5979 40 1 10.8484 6.7214 3.3582 41 1 11.0807 4.9631 3.1801 42 1 8.9188 6.3611 4.8224 43 1 10.3011 5.4351 5.4558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699888396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:07 Heat of formation + Delta-G solvation = -134.871481 kcal Electronic energy + Delta-G solvation = -27722.816825 eV Core-core repulsion = 23440.393198 eV Total energy + Delta-G solvation = -4282.423627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.73419 -46.68444 -39.81946 -38.12644 -37.53251 -35.01463 -34.08727 -32.83324 -31.57042 -30.60852 -28.71709 -26.21698 -25.31550 -25.09742 -22.94634 -21.41246 -20.75944 -20.19950 -19.87305 -17.64464 -17.24029 -17.15453 -16.87436 -16.55988 -16.33766 -15.87415 -15.44811 -15.28201 -15.00929 -14.82653 -14.42777 -13.94862 -13.79717 -13.46913 -13.34887 -13.09828 -13.06087 -12.94645 -12.56832 -12.44516 -12.34035 -12.12695 -11.98795 -11.76950 -11.73045 -11.26003 -11.06663 -10.79410 -10.41249 -10.24612 -10.22412 -10.03079 -9.77897 -9.64409 -9.58716 -9.04736 -8.87550 -7.27112 -6.14479 -3.53732 1.83132 2.61905 2.78332 3.11370 3.34907 3.38596 3.81626 4.04737 4.31758 4.35525 4.43832 4.61787 4.68633 4.76517 4.79404 4.82842 4.96832 5.00660 5.11405 5.13690 5.20611 5.21631 5.27520 5.50190 5.55515 5.68022 5.76623 5.85243 5.91008 6.07417 6.15490 6.26327 6.29567 6.31640 6.33043 6.41807 6.59001 6.81903 7.47968 7.70024 8.11845 8.21581 8.69152 9.48908 9.83145 11.00516 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.003995 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.118365 B = 7007.150462 C = 8724.543524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.360 6.360 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.522 6.522 8 N -0.724 5.724 9 C 0.126 3.874 10 C -0.157 4.157 11 H 0.110 0.890 12 C 0.134 3.866 13 N -0.604 5.604 14 C -0.266 4.266 15 H 0.091 0.909 16 C 0.027 3.973 17 N -0.902 5.902 18 Si 0.875 3.125 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.267 1.267 22 C 0.147 3.853 23 C -0.172 4.172 24 C 0.302 3.698 25 F -0.208 7.208 26 F -0.199 7.199 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.265 0.735 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 -7.451 4.311 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.008 3.992 4 O -0.278 6.278 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.397 6.397 8 N -0.378 5.378 9 C 0.002 3.998 10 C -0.179 4.179 11 H 0.128 0.872 12 C 0.007 3.993 13 N -0.327 5.327 14 C -0.394 4.394 15 H 0.109 0.891 16 C -0.172 4.172 17 N -0.544 5.544 18 Si 0.705 3.295 19 H -0.216 1.216 20 H -0.227 1.227 21 H -0.192 1.192 22 C 0.021 3.979 23 C -0.212 4.212 24 C 0.265 3.735 25 F -0.189 7.189 26 F -0.180 7.180 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.126 -8.320 4.705 13.215 hybrid contribution -0.125 -0.390 -0.859 0.951 sum -9.251 -8.710 3.847 13.276 Atomic orbital electron populations 1.23829 0.95481 1.02294 1.00259 1.22726 0.95615 0.98214 1.00019 1.21638 0.88788 0.96195 0.92530 1.88024 1.44337 1.34983 1.60459 1.22217 0.93252 0.89241 0.99028 1.20158 0.82363 0.83885 0.83593 1.90721 1.72359 1.26771 1.49849 1.45854 1.31797 1.17706 1.42462 1.21323 0.88760 0.97372 0.92380 1.23028 0.97341 0.99327 0.98205 0.87229 1.21461 0.93277 0.91346 0.93182 1.44405 1.36970 1.20347 1.30983 1.18930 1.42243 0.88024 0.90154 0.89144 1.25276 0.99170 0.96692 0.96091 1.69817 1.43167 1.30661 1.10726 0.87097 0.78058 0.86040 0.78341 1.21621 1.22741 1.19207 1.20950 0.90973 1.01149 0.84841 1.23060 1.00799 0.95065 1.02250 1.20938 0.86037 0.85692 0.80834 1.92977 1.81792 1.95585 1.48542 1.92972 1.71884 1.59261 1.93876 0.88388 0.87740 0.86417 0.92446 0.91934 0.89865 0.89897 0.75859 0.90570 0.90650 0.94099 0.89964 0.92533 0.90235 0.94554 0.88723 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 14.31 29.02 0.42 -0.99 16 2 C -0.15 -1.41 9.89 -36.02 -0.36 -1.76 16 3 C 0.08 0.85 6.35 36.01 0.23 1.08 16 4 O -0.36 -4.97 9.86 -55.14 -0.54 -5.52 16 5 C 0.04 0.52 6.42 36.01 0.23 0.75 16 6 C 0.52 8.07 7.91 -10.98 -0.09 7.99 16 7 O -0.52 -10.26 16.50 -14.35 -0.24 -10.50 16 8 N -0.72 -10.67 5.33 -60.29 -0.32 -10.99 16 9 C 0.13 1.99 4.83 -4.04 -0.02 1.97 16 10 C -0.16 -2.57 2.03 -90.50 -0.18 -2.75 16 11 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 12 C 0.13 2.62 3.07 -3.71 -0.01 2.61 16 13 N -0.60 -12.91 2.77 -172.31 -0.48 -13.39 16 14 C -0.27 -6.72 10.04 -15.06 -0.15 -6.87 16 15 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 16 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 17 N -0.90 -25.46 13.97 55.49 0.78 -24.69 16 18 Si 0.87 20.57 24.35 -169.99 -4.14 16.43 16 19 H -0.29 -6.27 6.70 56.52 0.38 -5.89 16 20 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.27 -6.35 6.45 56.52 0.36 -5.99 16 22 C 0.15 2.60 6.31 -3.71 -0.02 2.58 16 23 C -0.17 -2.57 5.62 -26.61 -0.15 -2.72 16 24 C 0.30 4.85 1.63 -26.69 -0.04 4.80 16 25 F -0.21 -3.30 16.41 2.25 0.04 -3.26 16 26 F -0.20 -3.45 15.73 2.25 0.04 -3.42 16 27 H 0.10 0.65 7.90 -52.49 -0.41 0.24 16 28 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 5.41 7.71 -40.82 -0.31 5.09 16 35 H 0.08 1.20 7.63 -51.93 -0.40 0.80 16 36 H 0.08 1.28 7.97 -51.93 -0.41 0.87 16 37 H 0.04 0.85 6.76 -51.93 -0.35 0.50 16 38 H 0.08 1.69 3.71 -51.92 -0.19 1.50 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.08 1.35 7.93 -51.93 -0.41 0.94 16 41 H 0.04 0.65 7.92 -51.93 -0.41 0.24 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -31.56 355.55 -6.07 -37.63 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.31 Total: 5.03 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.24 Total: 7.32 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.02 Total: -49.07 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.78 Total: -16.01 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.07 Total: -6.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.14 Total: 16.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.56 -6.07 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699888396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.243 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds