Wall clock time and date at job start Tue Mar 31 2020 13:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00260 * 2 1 4 4 O 1.42900 * 109.47076 * 135.00105 * 3 2 1 5 5 C 1.42894 * 113.99956 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.21271 * 119.99947 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99720 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99676 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47195 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.49324 * 54.93537 * 10 9 8 12 12 C 1.53195 * 109.49867 * 294.84166 * 10 9 8 13 13 N 1.46923 * 108.77760 * 185.41146 * 12 10 9 14 14 C 1.36934 * 120.63020 * 233.58755 * 13 12 10 15 15 H 1.08003 * 119.99615 * 152.78890 * 14 13 12 16 16 C 1.38812 * 120.00389 * 332.78603 * 14 13 12 17 17 N 1.31616 * 120.00243 * 159.74452 * 16 14 13 18 18 Si 1.86803 * 119.99729 * 339.74740 * 16 14 13 19 19 H 1.48498 * 109.46840 * 94.90401 * 18 16 14 20 20 H 1.48503 * 109.46840 * 214.89975 * 18 16 14 21 21 H 1.48490 * 109.47061 * 334.90383 * 18 16 14 22 22 C 1.46930 * 118.73623 * 53.60800 * 13 12 10 23 23 C 1.53196 * 108.77515 * 306.39213 * 22 13 12 24 24 C 1.53035 * 109.31110 * 54.63727 * 23 22 13 25 25 F 1.39897 * 109.45845 * 178.61390 * 24 23 22 26 26 F 1.39890 * 109.45371 * 58.64728 * 24 23 22 27 27 H 1.07998 * 119.99708 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00172 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00192 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46667 * 15.00262 * 3 2 1 31 31 H 1.08997 * 109.46900 * 255.00351 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00523 * 5 4 3 33 33 H 1.09004 * 109.46956 * 60.00147 * 5 4 3 34 34 H 0.97000 * 120.00238 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47506 * 300.00460 * 9 8 6 36 36 H 1.09002 * 109.46556 * 59.99901 * 9 8 6 37 37 H 1.08999 * 109.58683 * 305.20163 * 12 10 9 38 38 H 1.09008 * 109.58540 * 65.62232 * 12 10 9 39 39 H 0.96998 * 120.00219 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.58433 * 186.60228 * 22 13 12 41 41 H 1.08995 * 109.58676 * 66.18372 * 22 13 12 42 42 H 1.09004 * 109.49585 * 294.68117 * 23 22 13 43 43 H 1.09000 * 109.52215 * 174.60509 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9078 2.4351 1.0328 6 6 4.9942 2.2566 2.0619 7 8 5.0904 1.2098 2.6667 8 7 5.8588 3.2603 2.3101 9 6 6.9146 3.0869 3.3109 10 6 7.7509 4.3652 3.3967 11 1 7.0976 5.2146 3.5959 12 6 8.4865 4.5849 2.0710 13 7 9.3829 5.7402 2.2134 14 6 9.3228 6.7832 1.3281 15 1 9.6212 7.7734 1.6393 16 6 8.8784 6.5678 0.0308 17 7 8.4411 7.5776 -0.6912 18 14 8.9011 4.8446 -0.6901 19 1 7.5699 4.2131 -0.5050 20 1 9.2166 4.9186 -2.1394 21 1 9.9346 4.0326 0.0008 22 6 10.3455 5.7549 3.3234 23 6 9.5890 5.5221 4.6351 24 6 8.7740 4.2314 4.5270 25 9 8.1067 3.9991 5.7344 26 9 9.6316 3.1602 4.2550 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3855 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 4.3580 2.6408 0.0617 33 1 3.2678 3.2693 1.3206 34 1 5.7816 4.0977 1.8266 35 1 6.4645 2.8809 4.2820 36 1 7.5547 2.2529 3.0229 37 1 9.0701 3.6976 1.8255 38 1 7.7628 4.7792 1.2794 39 1 8.1309 7.4271 -1.5979 40 1 10.8484 6.7214 3.3582 41 1 11.0807 4.9631 3.1801 42 1 8.9188 6.3611 4.8224 43 1 10.3011 5.4351 5.4558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699888396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:06 Heat of formation + Delta-G solvation = -155.769264 kcal Electronic energy + Delta-G solvation = -27723.723021 eV Core-core repulsion = 23440.393198 eV Total energy + Delta-G solvation = -4283.329823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.03809 -47.99058 -41.02731 -39.36808 -38.72380 -36.39223 -34.80284 -34.57651 -32.93986 -32.26254 -29.74890 -27.33188 -26.93839 -26.18309 -24.42191 -22.86210 -21.93760 -21.33549 -20.89671 -19.15358 -18.62033 -18.36313 -18.06225 -17.53293 -17.50198 -17.23999 -16.90600 -16.52309 -16.39962 -15.97867 -15.72451 -15.18221 -15.10871 -14.87784 -14.62168 -14.50225 -14.31283 -14.22971 -14.08040 -13.62658 -13.47454 -13.37171 -13.23598 -13.21511 -13.07269 -12.60971 -12.31207 -12.16146 -11.92522 -11.83680 -11.64418 -11.38800 -11.08041 -10.96233 -10.77966 -10.33138 -10.27645 -9.07699 -8.17071 -5.52202 1.15459 1.24292 1.42568 1.44290 1.49398 1.73624 2.37186 2.65641 2.93690 2.97127 3.11832 3.16739 3.37919 3.40979 3.61196 3.78426 3.96158 4.02957 4.10906 4.12615 4.17045 4.20972 4.34697 4.41984 4.46750 4.48911 4.57729 4.59343 4.67147 4.75459 4.89907 4.92941 4.95901 5.16667 5.21033 5.63538 5.66269 5.82335 5.99747 6.12519 6.34987 6.82929 7.03698 7.54980 7.94247 9.01699 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.003995 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.118365 B = 7007.150462 C = 8724.543524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.081 3.919 4 O -0.393 6.393 5 C 0.045 3.955 6 C 0.511 3.489 7 O -0.569 6.569 8 N -0.718 5.718 9 C 0.131 3.869 10 C -0.145 4.145 11 H 0.122 0.878 12 C 0.134 3.866 13 N -0.616 5.616 14 C -0.249 4.249 15 H 0.066 0.934 16 C -0.020 4.020 17 N -0.946 5.946 18 Si 0.923 3.077 19 H -0.261 1.261 20 H -0.314 1.314 21 H -0.273 1.273 22 C 0.142 3.858 23 C -0.162 4.162 24 C 0.300 3.700 25 F -0.204 7.204 26 F -0.207 7.207 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.263 0.737 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.103 0.897 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 -7.778 5.068 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.005 3.995 4 O -0.312 6.312 5 C -0.035 4.035 6 C 0.298 3.702 7 O -0.447 6.447 8 N -0.372 5.372 9 C 0.006 3.994 10 C -0.167 4.167 11 H 0.140 0.860 12 C 0.008 3.992 13 N -0.340 5.340 14 C -0.378 4.378 15 H 0.084 0.916 16 C -0.216 4.216 17 N -0.591 5.591 18 Si 0.753 3.247 19 H -0.187 1.187 20 H -0.243 1.243 21 H -0.198 1.198 22 C 0.017 3.983 23 C -0.201 4.201 24 C 0.264 3.736 25 F -0.185 7.185 26 F -0.188 7.188 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.265 -8.653 5.489 14.504 hybrid contribution 0.247 -0.269 -1.021 1.084 sum -10.018 -8.923 4.468 14.140 Atomic orbital electron populations 1.24067 0.94870 1.03610 0.97521 1.22768 0.96393 0.97867 1.02606 1.21840 0.88300 0.96990 0.92335 1.87983 1.45498 1.35998 1.61770 1.22314 0.92761 0.89817 0.98582 1.20855 0.82700 0.83042 0.83564 1.90696 1.73656 1.28564 1.51795 1.45831 1.31262 1.18006 1.42087 1.21194 0.88808 0.96532 0.92845 1.22855 0.97258 1.00000 0.96539 0.85995 1.21365 0.92934 0.90130 0.94765 1.44510 1.38454 1.19807 1.31212 1.18874 1.40080 0.88192 0.90641 0.91617 1.25731 0.99955 0.99275 0.96593 1.69920 1.45591 1.32522 1.11096 0.86291 0.79200 0.82725 0.76510 1.18681 1.24268 1.19772 1.21106 0.90773 1.01568 0.84887 1.22971 1.01172 0.94612 1.01339 1.21008 0.85957 0.85918 0.80755 1.92987 1.81728 1.95582 1.48165 1.92963 1.72111 1.59778 1.93951 0.86951 0.86504 0.87564 0.90594 0.90922 0.88035 0.86676 0.74840 0.90299 0.92029 0.95062 0.90836 0.92726 0.89756 0.94390 0.87808 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 14.31 67.79 0.97 -1.23 16 2 C -0.18 -3.22 9.89 25.65 0.25 -2.96 16 3 C 0.08 1.48 6.35 71.24 0.45 1.93 16 4 O -0.39 -10.40 9.86 -129.94 -1.28 -11.69 16 5 C 0.04 0.99 6.42 71.24 0.46 1.45 16 6 C 0.51 15.39 7.91 87.66 0.69 16.09 16 7 O -0.57 -22.27 16.50 16.04 0.26 -22.01 16 8 N -0.72 -19.92 5.33 -463.05 -2.47 -22.39 16 9 C 0.13 3.94 4.83 86.38 0.42 4.36 16 10 C -0.15 -4.44 2.03 -10.72 -0.02 -4.46 16 11 H 0.12 3.46 8.14 -2.39 -0.02 3.45 16 12 C 0.13 5.04 3.07 86.36 0.27 5.30 16 13 N -0.62 -25.55 2.77 -699.08 -1.94 -27.49 16 14 C -0.25 -12.52 10.04 84.03 0.84 -11.68 16 15 H 0.07 3.59 8.06 -2.91 -0.02 3.57 16 16 C -0.02 -1.03 5.24 84.86 0.44 -0.59 16 17 N -0.95 -54.00 13.97 21.65 0.30 -53.70 16 18 Si 0.92 42.15 24.35 68.60 1.67 43.82 16 19 H -0.26 -10.57 6.70 99.48 0.67 -9.90 16 20 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 21 H -0.27 -12.54 6.45 99.48 0.64 -11.90 16 22 C 0.14 4.74 6.31 86.36 0.55 5.29 16 23 C -0.16 -4.35 5.62 30.67 0.17 -4.18 16 24 C 0.30 8.92 1.63 30.62 0.05 8.97 16 25 F -0.20 -5.91 16.41 44.97 0.74 -5.17 16 26 F -0.21 -6.79 15.73 44.97 0.71 -6.08 16 27 H 0.11 1.17 7.90 -2.91 -0.02 1.15 16 28 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.11 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.08 1.07 7.86 -2.38 -0.02 1.05 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 10.10 7.71 -92.71 -0.71 9.38 16 35 H 0.08 2.37 7.63 -2.39 -0.02 2.35 16 36 H 0.06 2.05 7.97 -2.39 -0.02 2.03 16 37 H 0.03 1.25 6.76 -2.39 -0.02 1.24 16 38 H 0.07 2.89 3.71 -2.38 -0.01 2.88 16 39 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 41 H 0.04 1.28 7.92 -2.39 -0.02 1.26 16 42 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -68.48 355.55 3.74 -64.74 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.20 Total: 21.66 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 5.54 Total: 18.29 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.11 Total: -103.57 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.02 Total: -33.69 kcal Atomic # 9 Polarization: -12.70 SS G_CDS: 1.44 Total: -11.25 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.67 Total: 43.82 kcal Total: -68.48 3.74 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699888396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.026 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds