Wall clock time and date at job start Tue Mar 31 2020 14:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47309 * 2 1 4 4 C 1.53001 * 109.46659 * 120.00223 * 2 1 3 5 5 C 1.53001 * 109.46499 * 184.99719 * 4 2 1 6 6 N 1.46503 * 109.47023 * 179.97438 * 5 4 2 7 7 C 1.34773 * 119.99942 * 179.97438 * 6 5 4 8 8 O 1.21592 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.47511 * 119.99810 * 179.97438 * 7 6 5 10 10 C 1.40153 * 119.94705 * 0.02562 * 9 7 6 11 11 C 1.36218 * 120.49325 * 179.97438 * 10 9 7 12 12 C 1.40010 * 120.08454 * 0.26082 * 11 10 9 13 13 N 1.35562 * 133.26933 * 179.74575 * 12 11 10 14 14 C 1.30920 * 109.71396 * 179.97438 * 13 12 11 15 15 O 1.35206 * 125.01050 * 180.02562 * 14 13 12 16 16 N 1.36255 * 109.97152 * 359.55168 * 14 13 12 17 17 H 0.97000 * 126.39406 * 179.97438 * 16 14 13 18 18 C 1.38560 * 107.20663 * 0.50135 * 16 14 13 19 19 C 1.38216 * 133.89935 * 179.38999 * 18 16 14 20 20 N 1.46499 * 109.46896 * 240.00048 * 2 1 3 21 21 C 1.36936 * 120.00149 * 84.99805 * 20 2 1 22 22 H 1.07997 * 119.99949 * 0.02562 * 21 20 2 23 23 C 1.38814 * 120.00102 * 179.97438 * 21 20 2 24 24 N 1.31626 * 119.99795 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46723 * 90.00123 * 25 23 21 27 27 H 1.48498 * 109.46976 * 210.00241 * 25 23 21 28 28 H 1.48492 * 109.46899 * 330.00193 * 25 23 21 29 29 H 1.08995 * 109.47735 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47189 * 300.00417 * 1 2 3 31 31 H 1.09004 * 109.47419 * 59.99607 * 1 2 3 32 32 H 1.08999 * 109.47511 * 65.00054 * 4 2 1 33 33 H 1.09000 * 109.47136 * 304.99286 * 4 2 1 34 34 H 1.08999 * 109.47399 * 60.00316 * 5 4 2 35 35 H 1.09000 * 109.47073 * 299.99606 * 5 4 2 36 36 H 0.97002 * 119.99793 * 0.02562 * 6 5 4 37 37 H 1.07999 * 119.75572 * 359.97438 * 10 9 7 38 38 H 1.08002 * 119.95433 * 179.97438 * 11 10 9 39 39 H 0.96698 * 114.00322 * 90.02333 * 15 14 13 40 40 H 1.07993 * 120.20655 * 0.02562 * 19 18 16 41 41 H 0.96998 * 119.99810 * 265.00727 * 20 2 1 42 42 H 0.97001 * 119.99681 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3739 -1.3397 2.7753 8 8 6.1604 -0.7992 2.0217 9 6 5.8655 -2.0341 3.9803 10 6 4.9581 -2.6563 4.8484 11 6 5.3998 -3.3011 5.9640 12 6 6.7687 -3.3422 6.2552 13 7 7.4877 -3.8889 7.2660 14 6 8.7615 -3.6492 7.0819 15 8 9.7541 -4.0547 7.9056 16 7 8.9402 -2.9399 5.9324 17 1 9.7867 -2.6356 5.5695 18 6 7.6858 -2.7241 5.3848 19 6 7.2333 -2.0710 4.2538 20 7 2.0183 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8926 1.0405 -2.4242 23 6 2.6122 -0.6618 -3.5091 24 7 2.9252 -1.9389 -3.4499 25 14 2.7912 0.2703 -5.1180 26 1 4.1535 0.8554 -5.2021 27 1 2.5812 -0.6609 -6.2555 28 1 1.7812 1.3573 -5.1753 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2056 33 1 1.6053 -0.2618 2.1370 34 1 3.8532 0.4368 1.3574 35 1 3.9993 -1.0730 0.4259 36 1 3.4257 -1.7351 3.1111 37 1 3.9006 -2.6244 4.6313 38 1 4.6928 -3.7773 6.6272 39 1 10.1179 -4.9231 7.6853 40 1 7.9339 -1.5921 3.5860 41 1 2.2489 -1.6318 -1.1526 42 1 3.2485 -2.3961 -4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717342041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:38 Heat of formation + Delta-G solvation = -23.863893 kcal Electronic energy + Delta-G solvation = -25083.753595 eV Core-core repulsion = 21256.832805 eV Total energy + Delta-G solvation = -3826.920791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.29527 -40.96258 -39.05268 -38.12357 -37.28549 -35.87605 -34.38716 -34.12478 -31.42919 -31.19833 -30.37357 -29.13394 -25.92296 -25.14324 -23.93953 -23.53953 -22.76501 -21.89641 -21.19051 -20.09512 -19.43483 -19.05678 -18.46613 -17.60203 -17.10894 -16.88398 -16.66713 -16.36023 -15.68435 -15.57022 -15.27578 -15.20599 -15.03657 -14.91968 -14.47063 -14.24380 -14.09472 -13.52615 -13.22607 -13.06207 -12.82028 -12.69234 -12.67714 -12.57531 -12.25584 -12.19853 -12.07106 -11.93721 -11.62659 -11.56387 -11.21659 -11.05684 -10.90664 -10.13478 -9.58814 -9.27438 -8.94505 -7.90401 -5.16554 -0.56419 0.28086 1.13844 1.37334 1.46955 1.48924 1.56307 1.96120 2.15534 2.58897 2.67910 2.80515 3.39815 3.43849 3.68734 3.93370 3.97298 4.04808 4.08588 4.13271 4.19173 4.27158 4.42278 4.48435 4.71798 4.82218 4.91466 4.93633 5.06922 5.10385 5.15702 5.24402 5.26134 5.27989 5.44464 5.45392 5.57220 5.60977 5.66195 5.83644 6.33019 6.55762 6.56342 6.61904 7.22504 7.38942 8.17873 8.38672 9.33171 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.002210 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.715954 B =12665.939839 C =13490.131476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.116 4.116 5 C 0.132 3.868 6 N -0.703 5.703 7 C 0.553 3.447 8 O -0.588 6.588 9 C -0.128 4.128 10 C -0.078 4.078 11 C -0.072 4.072 12 C 0.068 3.932 13 N -0.522 5.522 14 C 0.474 3.526 15 O -0.441 6.441 16 N -0.585 5.585 17 H 0.440 0.560 18 C 0.034 3.966 19 C -0.045 4.045 20 N -0.735 5.735 21 C -0.230 4.230 22 H 0.074 0.926 23 C -0.080 4.080 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.293 1.293 27 H -0.297 1.297 28 H -0.269 1.269 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.417 0.583 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.437 0.563 40 H 0.133 0.867 41 H 0.372 0.628 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -4.569 25.882 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.008 3.992 6 N -0.356 5.356 7 C 0.342 3.658 8 O -0.469 6.469 9 C -0.132 4.132 10 C -0.099 4.099 11 C -0.091 4.091 12 C -0.052 4.052 13 N -0.255 5.255 14 C 0.169 3.831 15 O -0.247 6.247 16 N -0.211 5.211 17 H 0.282 0.718 18 C -0.076 4.076 19 C -0.067 4.067 20 N -0.375 5.375 21 C -0.362 4.362 22 H 0.092 0.908 23 C -0.272 4.272 24 N -0.621 5.621 25 Si 0.795 3.205 26 H -0.220 1.220 27 H -0.224 1.224 28 H -0.193 1.193 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.256 0.744 37 H 0.185 0.815 38 H 0.180 0.820 39 H 0.301 0.699 40 H 0.151 0.849 41 H 0.204 0.796 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.029 -4.022 26.276 27.768 hybrid contribution 1.329 -0.022 -2.161 2.537 sum 9.358 -4.043 24.115 26.181 Atomic orbital electron populations 1.22262 0.97118 1.01079 1.00834 1.20474 0.93159 0.95238 0.85697 0.93937 1.21931 0.92279 1.02292 0.98973 1.21156 0.95495 0.96228 0.86288 1.45760 1.06892 1.56141 1.26776 1.18497 0.82655 0.79506 0.85188 1.90792 1.56668 1.48249 1.51233 1.19512 0.93683 1.03676 0.96368 1.21013 1.00586 0.95612 0.92715 1.20202 0.91556 0.99587 0.97789 1.19380 0.95248 0.99018 0.91576 1.70643 1.01252 1.27119 1.26513 1.20469 0.87416 0.92623 0.82584 1.84790 1.47958 1.43204 1.48749 1.43375 1.08798 1.48353 1.20565 0.71772 1.18406 0.85650 1.05343 0.98156 1.19992 0.95297 0.97231 0.94182 1.42656 1.78343 1.10253 1.06296 1.19600 1.34108 0.94052 0.88471 0.90821 1.25482 1.03509 0.96881 1.01315 1.69809 1.53056 1.10108 1.29162 0.85247 0.77667 0.77562 0.79994 1.22045 1.22393 1.19344 0.93563 0.90524 0.95021 0.90710 0.87382 0.92819 0.94383 0.74386 0.81492 0.82034 0.69900 0.84914 0.79604 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.90 2.89 44.99 0.13 6.03 16 3 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 4 C -0.12 -3.15 4.87 30.60 0.15 -3.00 16 5 C 0.13 4.26 5.56 86.38 0.48 4.74 16 6 N -0.70 -17.66 5.50 -466.29 -2.57 -20.22 16 7 C 0.55 16.48 7.76 86.69 0.67 17.15 16 8 O -0.59 -23.52 16.33 -4.01 -0.07 -23.58 16 9 C -0.13 -2.91 5.88 -20.06 -0.12 -3.03 16 10 C -0.08 -1.25 9.46 22.26 0.21 -1.04 16 11 C -0.07 -1.18 10.03 22.23 0.22 -0.95 16 12 C 0.07 1.40 7.22 39.61 0.29 1.68 16 13 N -0.52 -10.96 11.29 -306.24 -3.46 -14.41 16 14 C 0.47 7.33 9.39 179.75 1.69 9.01 16 15 O -0.44 -3.92 13.62 -84.87 -1.16 -5.07 16 16 N -0.59 -8.22 6.27 -302.67 -1.90 -10.12 16 17 H 0.44 3.39 8.96 -92.71 -0.83 2.56 16 18 C 0.03 0.66 7.29 38.69 0.28 0.95 16 19 C -0.05 -1.02 9.61 22.58 0.22 -0.80 16 20 N -0.73 -35.91 4.57 -322.94 -1.48 -37.38 16 21 C -0.23 -12.75 9.93 84.03 0.83 -11.92 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 24 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 25 Si 0.97 47.26 29.55 68.60 2.03 49.28 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.61 7.75 -2.39 -0.02 1.59 16 36 H 0.42 6.74 6.47 -92.71 -0.60 6.14 16 37 H 0.17 1.49 6.36 -2.91 -0.02 1.47 16 38 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.44 -1.05 9.06 -74.06 -0.67 -1.72 16 40 H 0.13 3.10 7.64 -2.91 -0.02 3.08 16 41 H 0.37 19.68 7.80 -92.71 -0.72 18.96 16 42 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -82.63 361.56 -3.82 -86.46 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -1.72 Total: 24.65 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.20 Total: 10.43 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -9.12 Total: -142.17 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.22 Total: -28.65 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -82.63 -3.82 -86.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717342041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.593 kcal (2) G-P(sol) polarization free energy of solvation -82.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds