Wall clock time and date at job start Tue Mar 31 2020 14:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21629 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.47246 * 120.00275 * 179.97438 * 16 15 14 19 19 C 1.38024 * 126.81219 * 359.68750 * 18 16 15 20 20 N 1.34104 * 107.88007 * 179.83738 * 19 18 16 21 21 H 0.97008 * 125.15457 * 180.16167 * 20 19 18 22 22 N 1.39763 * 109.68910 * 0.43635 * 20 19 18 23 23 C 1.31363 * 109.09058 * 359.73133 * 22 20 19 24 24 C 1.48319 * 126.51636 * 180.02562 * 23 22 20 25 25 C 1.46731 * 127.11588 * 324.99317 * 24 23 22 26 26 C 1.34363 * 106.02347 * 180.02562 * 25 24 23 27 27 O 1.34157 * 109.00191 * 359.97438 * 26 25 24 28 28 C 1.34085 * 110.75323 * 359.72999 * 27 26 25 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08002 * 126.05552 * 359.97438 * 19 18 16 40 40 H 1.08006 * 126.99077 * 359.97438 * 25 24 23 41 41 H 1.08001 * 125.49793 * 180.02562 * 26 25 24 42 42 H 1.08006 * 125.77110 * 180.30268 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4456 -3.7795 18 6 1.6064 0.3473 -4.8652 19 6 0.8877 1.5250 -4.9003 20 7 0.7516 1.8862 -6.1846 21 1 0.2887 2.6800 -6.4955 22 7 1.3722 0.9423 -7.0075 23 6 1.8991 0.0000 -6.2590 24 6 2.6482 -1.1888 -6.7338 25 6 2.4023 -1.9594 -7.9580 26 6 3.3215 -2.9393 -7.9703 27 8 4.0911 -2.8301 -6.8769 28 6 3.7078 -1.7856 -6.1285 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 0.5048 2.0618 -4.0449 40 1 1.6374 -1.7767 -8.6983 41 1 3.4248 -3.6928 -8.7372 42 1 4.1627 -1.4735 -5.2000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:20 Heat of formation + Delta-G solvation = 56.646233 kcal Electronic energy + Delta-G solvation = -25336.974747 eV Core-core repulsion = 21513.545138 eV Total energy + Delta-G solvation = -3823.429609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45039 -41.31327 -39.26495 -36.78160 -34.43214 -33.74155 -32.58971 -31.30916 -30.80806 -29.88497 -29.36103 -26.53351 -25.37950 -23.44657 -23.34536 -22.24960 -21.47885 -20.39194 -20.07775 -19.45893 -18.72514 -17.46754 -17.12967 -16.47398 -16.01848 -15.86243 -15.57672 -15.08360 -14.91370 -14.58629 -14.20027 -14.03778 -13.83891 -13.59559 -13.05186 -12.97125 -12.89574 -12.59975 -12.47306 -12.28803 -12.04809 -11.35540 -11.07142 -10.90946 -10.70790 -10.67258 -10.58021 -10.43510 -10.12789 -9.91973 -9.67401 -9.50428 -9.21324 -8.92430 -8.87620 -8.48107 -6.93106 -5.77940 -3.06174 1.18782 1.30439 1.90738 2.29946 2.71546 3.00702 3.20048 3.37052 3.44265 3.48526 3.49582 4.05051 4.22711 4.58728 4.62636 4.89076 4.92853 5.02172 5.13221 5.18390 5.21986 5.35312 5.37635 5.57198 5.71585 5.80942 5.95104 5.98000 6.02018 6.07511 6.11315 6.22992 6.27341 6.38801 6.50010 6.63915 6.70948 6.76539 6.86336 7.01156 7.17543 7.52699 7.69574 8.24371 8.41448 9.52622 10.09902 10.44560 11.45032 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.002228 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.807875 B =12563.169515 C =13571.182442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.129 3.871 15 N -0.722 5.722 16 C 0.593 3.407 17 O -0.544 6.544 18 C -0.285 4.285 19 C 0.110 3.890 20 N -0.464 5.464 21 H 0.444 0.556 22 N -0.286 5.286 23 C 0.211 3.789 24 C -0.146 4.146 25 C -0.188 4.188 26 C -0.049 4.049 27 O -0.180 6.180 28 C 0.055 3.945 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.396 0.604 39 H 0.189 0.811 40 H 0.150 0.850 41 H 0.203 0.797 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -0.072 -26.659 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.005 3.995 15 N -0.372 5.372 16 C 0.380 3.620 17 O -0.423 6.423 18 C -0.300 4.300 19 C -0.041 4.041 20 N -0.169 5.169 21 H 0.289 0.711 22 N -0.108 5.108 23 C 0.043 3.957 24 C -0.150 4.150 25 C -0.207 4.207 26 C -0.115 4.115 27 O -0.075 6.075 28 C -0.016 4.016 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.230 0.770 39 H 0.206 0.794 40 H 0.168 0.832 41 H 0.219 0.781 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.271 -0.683 -27.699 27.709 hybrid contribution -0.775 0.840 1.682 2.033 sum -0.504 0.157 -26.018 26.023 Atomic orbital electron populations 1.21792 0.94732 1.01994 1.01349 1.21556 0.96648 1.00490 0.94278 0.90572 1.20575 0.96651 0.94211 0.85347 1.42332 1.67064 1.27574 1.00577 1.19198 1.28663 1.05461 0.83644 0.91195 1.24734 1.01019 0.97444 0.97861 1.69646 1.43495 1.16691 1.28584 0.86251 0.78018 0.77719 0.84110 1.21254 1.21728 1.21264 1.21418 1.00223 0.95267 0.82591 1.45890 1.57872 1.27752 1.05723 1.17096 0.78948 0.84074 0.81859 1.90714 1.41007 1.24237 1.86331 1.21348 1.14479 1.00397 0.93780 1.23072 0.96441 0.95526 0.89061 1.45945 1.44718 1.22281 1.03958 0.71121 1.77383 1.16074 1.00972 1.16328 1.20821 0.94131 0.91830 0.88943 1.18835 1.00236 0.97735 0.98157 1.22735 1.02390 0.97156 0.98465 1.23822 0.94282 1.02418 0.90943 1.83948 1.50681 1.43064 1.29846 1.24608 0.95797 0.85778 0.95404 0.92774 0.91192 0.94031 0.96078 0.95981 0.78238 0.93504 0.91186 0.91211 0.76967 0.79386 0.83206 0.78062 0.76553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.94 37.16 0.33 -1.64 16 2 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 5 N -0.73 -17.95 5.33 -59.91 -0.32 -18.27 16 6 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.94 -27.83 13.06 55.49 0.72 -27.11 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.72 -7.79 5.27 -61.44 -0.32 -8.11 16 16 C 0.59 7.39 7.81 -12.60 -0.10 7.30 16 17 O -0.54 -8.29 13.04 5.25 0.07 -8.22 16 18 C -0.28 -3.10 6.31 -102.95 -0.65 -3.75 16 19 C 0.11 0.77 11.50 -16.64 -0.19 0.58 16 20 N -0.46 -3.31 7.20 30.82 0.22 -3.09 16 21 H 0.44 1.50 8.96 -182.84 -1.64 -0.14 16 22 N -0.29 -3.20 12.66 34.58 0.44 -2.76 16 23 C 0.21 2.60 7.34 -80.55 -0.59 2.01 16 24 C -0.15 -1.83 6.07 -103.18 -0.63 -2.46 16 25 C -0.19 -1.98 11.15 -37.52 -0.42 -2.40 16 26 C -0.05 -0.45 12.04 29.36 0.35 -0.09 16 27 O -0.18 -2.07 10.55 6.69 0.07 -2.00 16 28 C 0.05 0.67 10.28 29.88 0.31 0.98 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.16 7.18 -51.93 -0.37 0.78 16 31 H 0.04 0.45 7.18 -51.93 -0.37 0.07 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 3.22 6.61 -40.82 -0.27 2.95 16 39 H 0.19 0.53 7.48 -52.49 -0.39 0.13 16 40 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.22 2.60 6.36 -52.48 -0.33 2.27 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -35.49 359.81 -7.41 -42.90 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.59 Total: 7.86 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.09 Total: -3.86 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.74 Total: -59.34 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.14 Total: -10.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.49 -7.41 -42.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.542 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds