Wall clock time and date at job start Tue Mar 31 2020 14:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21629 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.47246 * 120.00275 * 179.97438 * 16 15 14 19 19 C 1.38024 * 126.81219 * 359.68750 * 18 16 15 20 20 N 1.34104 * 107.88007 * 179.83738 * 19 18 16 21 21 H 0.97008 * 125.15457 * 180.16167 * 20 19 18 22 22 N 1.39763 * 109.68910 * 0.43635 * 20 19 18 23 23 C 1.31363 * 109.09058 * 359.73133 * 22 20 19 24 24 C 1.48319 * 126.51636 * 180.02562 * 23 22 20 25 25 C 1.46731 * 127.11588 * 324.99317 * 24 23 22 26 26 C 1.34363 * 106.02347 * 180.02562 * 25 24 23 27 27 O 1.34157 * 109.00191 * 359.97438 * 26 25 24 28 28 C 1.34085 * 110.75323 * 359.72999 * 27 26 25 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08002 * 126.05552 * 359.97438 * 19 18 16 40 40 H 1.08006 * 126.99077 * 359.97438 * 25 24 23 41 41 H 1.08001 * 125.49793 * 180.02562 * 26 25 24 42 42 H 1.08006 * 125.77110 * 180.30268 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4456 -3.7795 18 6 1.6064 0.3473 -4.8652 19 6 0.8877 1.5250 -4.9003 20 7 0.7516 1.8862 -6.1846 21 1 0.2887 2.6800 -6.4955 22 7 1.3722 0.9423 -7.0075 23 6 1.8991 0.0000 -6.2590 24 6 2.6482 -1.1888 -6.7338 25 6 2.4023 -1.9594 -7.9580 26 6 3.3215 -2.9393 -7.9703 27 8 4.0911 -2.8301 -6.8769 28 6 3.7078 -1.7856 -6.1285 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 0.5048 2.0618 -4.0449 40 1 1.6374 -1.7767 -8.6983 41 1 3.4248 -3.6928 -8.7372 42 1 4.1627 -1.4735 -5.2000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753626424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:19 Heat of formation + Delta-G solvation = 30.392815 kcal Electronic energy + Delta-G solvation = -25338.113181 eV Core-core repulsion = 21513.545138 eV Total energy + Delta-G solvation = -3824.568043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.25845 -42.03944 -40.23206 -38.11454 -35.92249 -34.59686 -34.06920 -32.17101 -32.02998 -31.13455 -30.18780 -27.70659 -27.00498 -24.71109 -24.20981 -23.55467 -22.28749 -21.45635 -21.06771 -20.32393 -19.59193 -18.98709 -18.23581 -17.41134 -17.05204 -16.84746 -16.51952 -16.35761 -15.88446 -15.82077 -15.44621 -15.20575 -15.04991 -14.77626 -14.51230 -14.09588 -13.71590 -13.67250 -13.52895 -13.50537 -13.20783 -12.93366 -12.75549 -12.20081 -12.14947 -12.08634 -11.94112 -11.66958 -11.60506 -11.44962 -10.92546 -10.90252 -10.27100 -10.11196 -9.74611 -9.29142 -8.96351 -7.93532 -5.21107 0.44039 0.54660 1.14305 1.49174 1.51587 1.57567 1.70238 1.88842 2.22955 2.28465 2.50608 2.58952 3.37236 3.40165 3.55393 3.79142 4.01840 4.03307 4.09657 4.14765 4.22131 4.36512 4.44107 4.47362 4.61127 4.62550 4.78852 4.87907 4.95003 5.00063 5.10363 5.17885 5.19854 5.28071 5.40045 5.48402 5.51220 5.52397 5.57029 6.18024 6.27201 6.29574 6.43848 6.70320 7.35771 7.36564 8.12435 8.36677 9.29634 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.002228 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.807875 B =12563.169515 C =13571.182442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.072 0.928 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.971 3.029 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.142 3.858 15 N -0.709 5.709 16 C 0.592 3.408 17 O -0.579 6.579 18 C -0.318 4.318 19 C 0.144 3.856 20 N -0.447 5.447 21 H 0.462 0.538 22 N -0.310 5.310 23 C 0.189 3.811 24 C -0.163 4.163 25 C -0.208 4.208 26 C -0.036 4.036 27 O -0.192 6.192 28 C 0.035 3.965 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.238 0.762 40 H 0.162 0.838 41 H 0.244 0.756 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 0.502 -27.667 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.800 3.200 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.017 3.983 15 N -0.360 5.360 16 C 0.381 3.619 17 O -0.461 6.461 18 C -0.333 4.333 19 C -0.009 4.009 20 N -0.154 5.154 21 H 0.311 0.689 22 N -0.132 5.132 23 C 0.021 3.979 24 C -0.166 4.166 25 C -0.228 4.228 26 C -0.101 4.101 27 O -0.088 6.088 28 C -0.035 4.035 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.254 0.746 40 H 0.180 0.820 41 H 0.260 0.740 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.445 -0.092 -28.753 28.756 hybrid contribution -0.577 0.673 1.892 2.090 sum -1.022 0.580 -26.860 26.886 Atomic orbital electron populations 1.21736 0.93922 1.01826 1.01843 1.21329 0.97099 1.00172 0.92625 0.89985 1.20734 0.96550 0.94096 0.85767 1.42498 1.66908 1.27738 1.01278 1.19585 1.27804 1.05296 0.85117 0.90978 1.25516 1.01748 0.97973 1.01400 1.69788 1.44976 1.17891 1.29118 0.85246 0.77868 0.77157 0.79699 1.20531 1.22063 1.20570 1.21100 0.99627 0.94902 0.82637 1.45634 1.57812 1.28054 1.04540 1.17337 0.78320 0.83735 0.82491 1.90702 1.42616 1.25919 1.86825 1.21267 1.17212 1.02327 0.92535 1.23704 0.93473 0.93695 0.89984 1.45998 1.43500 1.22011 1.03874 0.68935 1.77306 1.16826 1.01638 1.17420 1.20990 0.94756 0.92177 0.89950 1.19215 1.00276 0.98260 0.98899 1.22988 1.03573 0.97722 0.98509 1.24640 0.92755 1.02357 0.90395 1.83935 1.51309 1.42938 1.30568 1.24510 0.96545 0.86636 0.95815 0.93303 0.93962 0.90174 0.96248 0.96312 0.79012 0.93986 0.91947 0.92025 0.75090 0.74560 0.82017 0.73984 0.77274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.94 71.98 0.64 -2.91 16 2 C -0.09 -2.58 2.46 -10.79 -0.03 -2.61 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.16 5.96 5.65 86.38 0.49 6.44 16 5 N -0.74 -36.49 5.33 -343.46 -1.83 -38.32 16 6 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 7 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 10 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.14 3.50 5.06 86.38 0.44 3.93 16 15 N -0.71 -13.83 5.27 -466.54 -2.46 -16.29 16 16 C 0.59 14.25 7.81 86.61 0.68 14.93 16 17 O -0.58 -18.00 13.04 -4.12 -0.05 -18.05 16 18 C -0.32 -6.47 6.31 -18.78 -0.12 -6.58 16 19 C 0.14 1.51 11.50 84.30 0.97 2.48 16 20 N -0.45 -5.10 7.20 -56.42 -0.41 -5.51 16 21 H 0.46 1.55 8.96 -213.53 -1.91 -0.37 16 22 N -0.31 -6.55 12.66 -44.51 -0.56 -7.11 16 23 C 0.19 4.60 7.34 44.08 0.32 4.92 16 24 C -0.16 -4.18 6.07 -18.93 -0.11 -4.30 16 25 C -0.21 -4.35 11.15 23.60 0.26 -4.08 16 26 C -0.04 -0.63 12.04 66.93 0.81 0.18 16 27 O -0.19 -4.48 10.55 1.01 0.01 -4.47 16 28 C 0.04 0.91 10.28 67.26 0.69 1.60 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.35 7.18 -2.39 -0.02 1.34 16 31 H 0.08 1.46 7.18 -2.39 -0.02 1.44 16 32 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.38 19.35 6.85 -92.71 -0.63 18.71 16 35 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 5.20 6.61 -92.71 -0.61 4.59 16 39 H 0.24 -0.03 7.48 -2.91 -0.02 -0.05 16 40 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.24 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.21 5.49 6.36 -2.91 -0.02 5.47 16 Total: -1.00 -79.05 359.81 1.28 -77.77 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -2.07 Total: 24.37 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 6.35 Total: -2.54 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -4.98 Total: -124.92 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.04 Total: -22.52 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -79.05 1.28 -77.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.163 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds