Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 C 1.53002 * 109.47042 * 174.99870 * 4 2 1 6 6 N 1.46496 * 109.47088 * 180.02562 * 5 4 2 7 7 C 1.36942 * 120.00193 * 180.02562 * 6 5 4 8 8 H 1.07993 * 119.99518 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00138 * 180.02562 * 7 6 5 10 10 N 1.31615 * 119.99623 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00035 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47367 * 90.00361 * 11 9 7 13 13 H 1.48500 * 109.47109 * 210.00645 * 11 9 7 14 14 H 1.48507 * 109.47242 * 330.00381 * 11 9 7 15 15 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 16 16 C 1.34773 * 120.00431 * 275.00470 * 15 2 1 17 17 O 1.21603 * 119.99887 * 359.97438 * 16 15 2 18 18 C 1.47512 * 119.99977 * 179.72696 * 16 15 2 19 19 C 1.40145 * 119.94621 * 359.97438 * 18 16 15 20 20 C 1.36217 * 120.49157 * 179.77412 * 19 18 16 21 21 C 1.40020 * 120.08400 * 0.49130 * 20 19 18 22 22 N 1.35554 * 133.26867 * 179.74973 * 21 20 19 23 23 C 1.30926 * 109.71411 * 180.02562 * 22 21 20 24 24 O 1.35202 * 125.01253 * 180.02562 * 23 22 21 25 25 N 1.36252 * 109.97125 * 0.02562 * 23 22 21 26 26 H 0.97000 * 126.39484 * 179.97438 * 25 23 22 27 27 C 1.38567 * 107.20709 * 359.97438 * 25 23 22 28 28 C 1.38215 * 133.89788 * 179.97438 * 27 25 23 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 31 31 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00334 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00376 * 4 2 1 34 34 H 1.08994 * 109.47635 * 300.00477 * 5 4 2 35 35 H 1.09002 * 109.46668 * 60.00131 * 5 4 2 36 36 H 0.97004 * 119.99872 * 0.02562 * 6 5 4 37 37 H 0.97006 * 119.99713 * 179.97438 * 10 9 7 38 38 H 0.97000 * 119.99456 * 95.00032 * 15 2 1 39 39 H 1.07993 * 119.75806 * 0.02562 * 19 18 16 40 40 H 1.07992 * 119.96102 * 180.25613 * 20 19 18 41 41 H 0.96703 * 113.98993 * 90.03476 * 24 23 22 42 42 H 1.07996 * 120.20097 * 359.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6133 -1.3135 6 7 4.0533 -1.3034 -2.5099 7 6 5.3954 -1.3401 -2.7794 8 1 6.0938 -0.8599 -2.1101 9 6 5.8581 -1.9936 -3.9134 10 7 7.1480 -2.0284 -4.1725 11 14 4.6500 -2.8236 -5.0714 12 1 4.2149 -1.8555 -6.1099 13 1 5.3066 -3.9857 -5.7220 14 1 3.4678 -3.2894 -4.3027 15 7 2.0183 -0.6905 1.1963 16 6 2.1470 -0.0182 2.3572 17 8 1.8582 1.1618 2.4116 18 6 2.6329 -0.7150 3.5631 19 6 2.9600 -2.0763 3.5005 20 6 3.4140 -2.7297 4.6061 21 6 3.5479 -2.0452 5.8203 22 7 3.9583 -2.4188 7.0571 23 6 3.9021 -1.3935 7.8694 24 8 4.2424 -1.4208 9.1776 25 7 3.4501 -0.2951 7.2019 26 1 3.3173 0.5906 7.5744 27 6 3.2155 -0.6795 5.8914 28 6 2.7592 -0.0194 4.7661 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 1.7517 -1.7716 -1.2055 33 1 1.6056 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9995 -1.0728 -0.4257 36 1 3.4259 -1.7344 -3.1113 37 1 7.4713 -2.4854 -4.9648 38 1 2.2490 -1.6317 1.1527 39 1 2.8551 -2.6104 2.5677 40 1 3.6675 -3.7778 4.5471 41 1 5.1721 -1.2149 9.3464 42 1 2.5022 1.0282 4.8176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754004207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = 11.394328 kcal Electronic energy + Delta-G solvation = -25383.406720 eV Core-core repulsion = 21558.014841 eV Total energy + Delta-G solvation = -3825.391879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58327 -40.11240 -38.45816 -36.93031 -36.36009 -34.53352 -33.65863 -32.11926 -31.08301 -30.45189 -29.15985 -28.26773 -24.52522 -23.71319 -23.19274 -22.11868 -21.52994 -21.06663 -20.56662 -19.48301 -18.51747 -17.78083 -17.55900 -16.83512 -16.35744 -15.91802 -15.24450 -14.84019 -14.54932 -14.47904 -14.34317 -14.18740 -14.04509 -13.67094 -13.49401 -13.32440 -12.65631 -12.61441 -12.47536 -12.05779 -11.92968 -11.89285 -11.52313 -11.25350 -11.17582 -10.89341 -10.74733 -10.52453 -10.45013 -10.15112 -9.99861 -9.59569 -9.12174 -8.89375 -8.85260 -8.49556 -7.23958 -5.76890 -3.12798 0.21334 1.03314 1.79605 2.08559 2.85340 3.07936 3.31558 3.36321 3.39123 3.44784 3.63790 4.06478 4.52364 4.58553 4.60959 4.74911 4.82787 4.88551 4.95135 5.12185 5.19051 5.26104 5.49660 5.61194 5.62772 5.65524 5.77772 5.81596 5.91981 5.93244 5.99877 6.01057 6.14571 6.21521 6.22790 6.32942 6.47096 6.70463 6.75013 7.08049 7.28054 7.47677 7.99626 8.16214 8.42014 9.21096 9.93224 10.12823 11.41574 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002598 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.157359 B =10774.529850 C =11950.361626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.712 5.712 16 C 0.564 3.436 17 O -0.542 6.542 18 C -0.115 4.115 19 C -0.089 4.089 20 C -0.069 4.069 21 C 0.082 3.918 22 N -0.487 5.487 23 C 0.459 3.541 24 O -0.442 6.442 25 N -0.597 5.597 26 H 0.425 0.575 27 C 0.042 3.958 28 C -0.040 4.040 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.402 0.598 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.413 0.587 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 2.528 23.778 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.364 5.364 16 C 0.351 3.649 17 O -0.420 6.420 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.038 4.038 22 N -0.219 5.219 23 C 0.155 3.845 24 O -0.244 6.244 25 N -0.221 5.221 26 H 0.265 0.735 27 C -0.066 4.066 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.238 0.762 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.272 0.728 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.170 2.397 24.218 27.209 hybrid contribution -0.320 0.277 -0.733 0.846 sum -12.490 2.673 23.485 26.734 Atomic orbital electron populations 1.22170 0.95284 1.02082 1.02435 1.20988 0.93649 0.97844 0.83401 0.88996 1.22129 0.98120 1.00872 0.96700 1.20625 0.90116 0.96073 0.90197 1.42718 1.05319 1.66163 1.26093 1.19063 0.82235 1.29387 1.06739 0.89278 1.24692 0.95622 1.00710 0.98251 1.69708 1.11744 1.48250 1.28536 0.86518 0.80845 0.79429 0.81521 1.21103 1.21752 1.20343 1.46015 1.66649 1.14298 1.09444 1.17979 0.77558 0.86373 0.83015 1.90774 1.50648 1.15446 1.85163 1.19629 1.04610 0.94215 0.93482 1.20825 0.98237 0.93139 0.98777 1.19951 0.99464 1.00514 0.88893 1.18987 1.01528 0.90785 0.92452 1.70660 1.24121 1.26524 1.00546 1.20387 0.96956 0.82390 0.84774 1.84810 1.34161 1.90931 1.14545 1.43404 1.57377 1.12932 1.08397 0.73480 1.18449 1.06959 0.96270 0.84943 1.19962 0.97490 1.00206 0.88527 0.92474 0.92241 0.91495 0.91326 0.90174 0.95507 0.95483 0.80709 0.93058 0.76190 0.84393 0.84184 0.72812 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.15 1.79 2.57 -67.93 -0.17 1.61 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.14 -1.91 4.87 -26.73 -0.13 -2.04 16 5 C 0.16 2.92 6.15 -4.04 -0.02 2.89 16 6 N -0.76 -17.70 5.41 -59.91 -0.32 -18.02 16 7 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 11 Si 0.89 21.89 27.74 -169.99 -4.71 17.18 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 15 N -0.71 -8.25 4.48 -54.85 -0.25 -8.50 16 16 C 0.56 7.29 7.72 -12.48 -0.10 7.19 16 17 O -0.54 -8.60 15.99 5.27 0.08 -8.51 16 18 C -0.11 -1.28 5.88 -104.92 -0.62 -1.89 16 19 C -0.09 -0.85 9.46 -39.59 -0.37 -1.23 16 20 C -0.07 -0.69 10.03 -39.64 -0.40 -1.09 16 21 C 0.08 0.94 7.22 -84.61 -0.61 0.32 16 22 N -0.49 -5.67 11.29 -12.18 -0.14 -5.80 16 23 C 0.46 4.00 9.39 -88.91 -0.83 3.17 16 24 O -0.44 -2.53 13.62 -17.30 -0.24 -2.77 16 25 N -0.60 -4.46 6.27 -11.93 -0.07 -4.53 16 26 H 0.43 1.75 8.96 -40.82 -0.37 1.38 16 27 C 0.04 0.43 7.29 -83.88 -0.61 -0.18 16 28 C -0.04 -0.42 9.61 -39.11 -0.38 -0.80 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.03 0.51 7.75 -51.93 -0.40 0.10 16 36 H 0.36 8.12 5.53 -40.82 -0.23 7.89 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.40 3.93 6.60 -40.82 -0.27 3.67 16 39 H 0.14 1.04 6.36 -52.49 -0.33 0.71 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.41 0.13 9.06 45.56 0.41 0.54 16 42 H 0.14 1.37 7.64 -52.49 -0.40 0.97 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -37.56 357.89 -8.16 -45.72 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.53 Total: 8.96 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.15 Total: -0.48 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -0.01 Total: -65.50 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.15 Total: -11.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.56 -8.16 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754004207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.115 kcal (2) G-P(sol) polarization free energy of solvation -37.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds