Wall clock time and date at job start Tue Mar 31 2020 14:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47273 * 2 1 4 4 C 1.46498 * 119.99588 * 263.76593 * 3 2 1 5 5 C 1.52997 * 109.47322 * 269.99916 * 4 3 2 6 6 N 1.46501 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.36930 * 119.99791 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00698 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99972 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00611 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99889 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47320 * 90.00000 * 11 9 7 13 13 H 1.48502 * 109.47259 * 210.00145 * 11 9 7 14 14 H 1.48497 * 109.47110 * 330.00157 * 11 9 7 15 15 C 1.34780 * 120.00036 * 83.76847 * 3 2 1 16 16 O 1.21568 * 119.99568 * 184.44811 * 15 3 2 17 17 C 1.47748 * 120.00035 * 4.44255 * 15 3 2 18 18 C 1.41115 * 126.30128 * 174.05355 * 17 15 3 19 19 C 1.37003 * 105.41737 * 180.11703 * 18 17 15 20 20 C 1.47332 * 126.62943 * 179.86625 * 19 18 17 21 21 C 1.36156 * 125.94662 * 179.71312 * 20 19 18 22 22 C 1.40870 * 106.72781 * 180.20217 * 21 20 19 23 23 C 1.34772 * 107.05812 * 359.63165 * 22 21 20 24 24 O 1.34329 * 108.70388 * 0.37390 * 23 22 21 25 25 N 1.36547 * 106.73221 * 359.60147 * 19 18 17 26 26 H 0.96998 * 125.02515 * 180.27752 * 25 19 18 27 27 N 1.28454 * 109.94333 * 0.26623 * 25 19 18 28 28 H 1.08997 * 109.46871 * 300.00757 * 1 2 3 29 29 H 1.09002 * 109.46544 * 59.99916 * 1 2 3 30 30 H 1.08991 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46871 * 239.99243 * 2 1 3 32 32 H 1.09002 * 109.46544 * 120.00083 * 2 1 3 33 33 H 1.09004 * 109.47476 * 30.00225 * 4 3 2 34 34 H 1.09003 * 109.46863 * 150.00084 * 4 3 2 35 35 H 1.09004 * 109.47098 * 300.00541 * 5 4 3 36 36 H 1.09003 * 109.47014 * 60.00260 * 5 4 3 37 37 H 0.96996 * 119.99827 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00859 * 180.02562 * 10 9 7 39 39 H 1.07992 * 127.28743 * 0.02562 * 18 17 15 40 40 H 1.07998 * 126.63305 * 359.93837 * 21 20 19 41 41 H 1.07999 * 126.47609 * 179.72919 * 22 21 20 42 42 H 1.07995 * 125.64723 * 180.11127 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3925 2.0258 -1.2613 5 6 3.8746 1.7722 -1.5437 6 7 4.2488 2.4173 -2.8047 7 6 5.5350 2.3252 -3.2655 8 1 6.2735 1.7767 -2.6997 9 6 5.8895 2.9360 -4.4606 10 7 7.1255 2.8471 -4.9039 11 14 4.6117 3.8830 -5.4405 12 1 4.6055 5.3024 -5.0043 13 1 4.9432 3.8108 -6.8862 14 1 3.2706 3.2885 -5.2099 15 6 2.1237 2.0588 1.1603 16 8 2.4513 3.2295 1.1529 17 6 1.8407 1.3788 2.4412 18 6 2.0209 1.9199 3.7319 19 6 1.6321 0.9324 4.5984 20 6 1.6344 1.0032 6.0700 21 6 1.2394 0.0141 6.9183 22 6 1.4037 0.5119 8.2259 23 6 1.8930 1.7627 8.1141 24 8 2.0281 2.0576 6.8106 25 7 1.2365 -0.1277 3.8341 26 1 0.9054 -0.9710 4.1807 27 7 1.3674 0.1571 2.5884 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.7923 1.6132 -2.0722 34 1 2.2151 3.0987 -1.1875 35 1 4.4749 2.1848 -0.7328 36 1 4.0521 0.6992 -1.6175 37 1 3.5855 2.9096 -3.3131 38 1 7.3733 3.2742 -5.7388 39 1 2.3889 2.9036 3.9835 40 1 0.8677 -0.9615 6.6421 41 1 1.1813 -0.0107 9.1445 42 1 2.1324 2.4207 8.9364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754068693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:10 Heat of formation + Delta-G solvation = 89.198043 kcal Electronic energy + Delta-G solvation = -25669.026026 eV Core-core repulsion = 21847.007969 eV Total energy + Delta-G solvation = -3822.018057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.26822 -42.64539 -39.56790 -36.23743 -34.75806 -33.71363 -32.57167 -32.23360 -31.59497 -30.44245 -28.83705 -27.96602 -24.77305 -23.58843 -23.22276 -22.63910 -22.01981 -21.17515 -21.04488 -19.39613 -18.65332 -17.67093 -17.38993 -16.75281 -16.61635 -16.08034 -15.81060 -15.00691 -14.93726 -14.34672 -14.21326 -13.84600 -13.81147 -13.61754 -13.51729 -13.42941 -13.24028 -12.79820 -12.70677 -12.46744 -11.99603 -11.56642 -11.49125 -11.09509 -11.07942 -10.79953 -10.68281 -10.58495 -10.22469 -10.11947 -9.98331 -9.71365 -9.54585 -8.84042 -8.52600 -8.46604 -7.18742 -5.71068 -3.07009 0.54497 1.42385 1.83765 1.85882 2.41394 2.73043 3.07079 3.35453 3.42719 3.46536 3.50521 3.94112 4.09730 4.39214 4.45244 4.64888 4.72448 4.93430 5.05597 5.19990 5.26979 5.27783 5.38629 5.45216 5.49303 5.50479 5.58621 5.63792 5.77253 5.82442 5.87903 5.90021 5.97998 6.03728 6.19329 6.41309 6.54482 6.60700 6.70723 6.88252 7.37226 7.52523 8.04342 8.23303 8.47238 9.26038 9.98182 10.17766 11.47292 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.002430 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.188561 B =11517.562992 C =12121.672552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.104 3.896 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.241 4.241 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.597 3.403 16 O -0.523 6.523 17 C 0.001 3.999 18 C -0.139 4.139 19 C 0.074 3.926 20 C 0.056 3.944 21 C -0.194 4.194 22 C -0.210 4.210 23 C -0.024 4.024 24 O -0.159 6.159 25 N -0.371 5.371 26 H 0.447 0.553 27 N -0.230 5.230 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.171 0.829 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 -9.452 27.159 33.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.325 5.325 4 C -0.018 4.018 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.371 4.371 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.382 3.618 16 O -0.396 6.396 17 C -0.159 4.159 18 C -0.166 4.166 19 C -0.051 4.051 20 C 0.004 3.996 21 C -0.215 4.215 22 C -0.229 4.229 23 C -0.093 4.093 24 O -0.053 6.053 25 N -0.088 5.088 26 H 0.293 0.707 27 N -0.066 5.066 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.194 0.806 38 H 0.069 0.931 39 H 0.188 0.812 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -17.931 -9.472 26.347 33.248 hybrid contribution -0.789 0.588 0.086 0.988 sum -18.720 -8.884 26.433 33.587 Atomic orbital electron populations 1.22078 0.95930 1.01837 1.01851 1.21916 0.94492 0.81971 1.04235 1.47737 1.63847 1.14581 1.06380 1.21780 0.97152 0.99278 0.83613 1.20906 0.91724 0.96293 0.89293 1.42552 1.09903 1.64476 1.23010 1.19034 0.85705 1.28403 1.03974 0.89235 1.24673 0.96133 1.00609 0.97845 1.69701 1.16662 1.49036 1.22902 0.86517 0.81483 0.80555 0.79805 1.20960 1.21753 1.20316 1.16915 0.77661 0.85531 0.81647 1.90838 1.47444 1.15143 1.86221 1.21913 1.06757 0.91770 0.95416 1.21882 1.04353 1.00634 0.89770 1.18187 1.08279 0.90737 0.87864 1.18827 1.05057 0.87401 0.88299 1.21765 1.06928 1.00230 0.92576 1.21746 1.06559 0.96190 0.98419 1.24283 1.03771 0.98234 0.83021 1.84119 1.66043 1.37575 1.17549 1.43583 1.47949 1.14476 1.02753 0.70737 1.73815 1.18099 1.16630 0.98104 0.92638 0.92836 0.91792 0.90131 0.88156 0.90295 0.89509 0.95038 0.95462 0.80645 0.93077 0.81185 0.83246 0.82822 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.76 37.16 0.36 -1.20 16 2 C 0.10 1.12 5.70 -4.04 -0.02 1.10 16 3 N -0.59 -8.86 2.49 -174.83 -0.43 -9.30 16 4 C 0.10 1.77 5.53 -4.04 -0.02 1.75 16 5 C 0.15 3.06 6.58 -4.04 -0.03 3.03 16 6 N -0.75 -18.88 5.41 -59.91 -0.32 -19.21 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.93 -30.16 13.97 55.49 0.78 -29.38 16 11 Si 0.89 22.73 27.73 -169.99 -4.71 18.01 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 14 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 15 C 0.60 9.71 7.63 -12.37 -0.09 9.62 16 16 O -0.52 -10.31 16.47 5.31 0.09 -10.22 16 17 C 0.00 0.01 6.66 -82.88 -0.55 -0.54 16 18 C -0.14 -1.68 10.77 -38.94 -0.42 -2.10 16 19 C 0.07 0.70 7.10 -82.52 -0.59 0.12 16 20 C 0.06 0.48 7.17 -36.63 -0.26 0.22 16 21 C -0.19 -1.25 10.85 -39.33 -0.43 -1.67 16 22 C -0.21 -1.18 10.88 -39.81 -0.43 -1.61 16 23 C -0.02 -0.14 12.08 29.50 0.36 0.21 16 24 O -0.16 -1.42 10.68 4.45 0.05 -1.37 16 25 N -0.37 -2.87 6.90 33.25 0.23 -2.64 16 26 H 0.45 1.70 8.96 -190.45 -1.71 -0.01 16 27 N -0.23 -2.39 7.54 33.36 0.25 -2.14 16 28 H 0.05 0.59 7.14 -51.93 -0.37 0.22 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 32 H 0.10 1.11 5.30 -51.93 -0.28 0.84 16 33 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 34 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.36 8.70 5.53 -40.82 -0.23 8.47 16 38 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 39 H 0.17 2.03 8.06 -52.49 -0.42 1.60 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -37.14 360.16 -7.81 -44.95 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.77 Total: 4.26 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.38 Total: 1.62 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.50 Total: -62.67 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.13 Total: -11.59 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.14 -7.81 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754068693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.144 kcal (2) G-P(sol) polarization free energy of solvation -37.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds