Wall clock time and date at job start Tue Mar 31 2020 14:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47273 * 2 1 4 4 C 1.46498 * 119.99588 * 263.76593 * 3 2 1 5 5 C 1.52997 * 109.47322 * 269.99916 * 4 3 2 6 6 N 1.46501 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.36930 * 119.99791 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00698 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99972 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00611 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99889 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47320 * 90.00000 * 11 9 7 13 13 H 1.48502 * 109.47259 * 210.00145 * 11 9 7 14 14 H 1.48497 * 109.47110 * 330.00157 * 11 9 7 15 15 C 1.34780 * 120.00036 * 83.76847 * 3 2 1 16 16 O 1.21568 * 119.99568 * 184.44811 * 15 3 2 17 17 C 1.47748 * 120.00035 * 4.44255 * 15 3 2 18 18 C 1.41115 * 126.30128 * 174.05355 * 17 15 3 19 19 C 1.37003 * 105.41737 * 180.11703 * 18 17 15 20 20 C 1.47332 * 126.62943 * 179.86625 * 19 18 17 21 21 C 1.36156 * 125.94662 * 179.71312 * 20 19 18 22 22 C 1.40870 * 106.72781 * 180.20217 * 21 20 19 23 23 C 1.34772 * 107.05812 * 359.63165 * 22 21 20 24 24 O 1.34329 * 108.70388 * 0.37390 * 23 22 21 25 25 N 1.36547 * 106.73221 * 359.60147 * 19 18 17 26 26 H 0.96998 * 125.02515 * 180.27752 * 25 19 18 27 27 N 1.28454 * 109.94333 * 0.26623 * 25 19 18 28 28 H 1.08997 * 109.46871 * 300.00757 * 1 2 3 29 29 H 1.09002 * 109.46544 * 59.99916 * 1 2 3 30 30 H 1.08991 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46871 * 239.99243 * 2 1 3 32 32 H 1.09002 * 109.46544 * 120.00083 * 2 1 3 33 33 H 1.09004 * 109.47476 * 30.00225 * 4 3 2 34 34 H 1.09003 * 109.46863 * 150.00084 * 4 3 2 35 35 H 1.09004 * 109.47098 * 300.00541 * 5 4 3 36 36 H 1.09003 * 109.47014 * 60.00260 * 5 4 3 37 37 H 0.96996 * 119.99827 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00859 * 180.02562 * 10 9 7 39 39 H 1.07992 * 127.28743 * 0.02562 * 18 17 15 40 40 H 1.07998 * 126.63305 * 359.93837 * 21 20 19 41 41 H 1.07999 * 126.47609 * 179.72919 * 22 21 20 42 42 H 1.07995 * 125.64723 * 180.11127 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3925 2.0258 -1.2613 5 6 3.8746 1.7722 -1.5437 6 7 4.2488 2.4173 -2.8047 7 6 5.5350 2.3252 -3.2655 8 1 6.2735 1.7767 -2.6997 9 6 5.8895 2.9360 -4.4606 10 7 7.1255 2.8471 -4.9039 11 14 4.6117 3.8830 -5.4405 12 1 4.6055 5.3024 -5.0043 13 1 4.9432 3.8108 -6.8862 14 1 3.2706 3.2885 -5.2099 15 6 2.1237 2.0588 1.1603 16 8 2.4513 3.2295 1.1529 17 6 1.8407 1.3788 2.4412 18 6 2.0209 1.9199 3.7319 19 6 1.6321 0.9324 4.5984 20 6 1.6344 1.0032 6.0700 21 6 1.2394 0.0141 6.9183 22 6 1.4037 0.5119 8.2259 23 6 1.8930 1.7627 8.1141 24 8 2.0281 2.0576 6.8106 25 7 1.2365 -0.1277 3.8341 26 1 0.9054 -0.9710 4.1807 27 7 1.3674 0.1571 2.5884 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.7923 1.6132 -2.0722 34 1 2.2151 3.0987 -1.1875 35 1 4.4749 2.1848 -0.7328 36 1 4.0521 0.6992 -1.6175 37 1 3.5855 2.9096 -3.3131 38 1 7.3733 3.2742 -5.7388 39 1 2.3889 2.9036 3.9835 40 1 0.8677 -0.9615 6.6421 41 1 1.1813 -0.0107 9.1445 42 1 2.1324 2.4207 8.9364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754068693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:09 Heat of formation + Delta-G solvation = 62.624625 kcal Electronic energy + Delta-G solvation = -25670.178336 eV Core-core repulsion = 21847.007969 eV Total energy + Delta-G solvation = -3823.170367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.96355 -43.29474 -40.80735 -37.65826 -36.52210 -34.33488 -33.86957 -33.12709 -32.97459 -31.74446 -29.77165 -29.19360 -26.22741 -24.84174 -24.01988 -23.77397 -23.06216 -22.48967 -21.69513 -20.28618 -19.78363 -19.40682 -18.42299 -17.59839 -17.31797 -17.19967 -16.75581 -16.43857 -16.14040 -15.78601 -15.35743 -15.28913 -15.04825 -14.97767 -14.69662 -14.57186 -13.85748 -13.73506 -13.66896 -13.43539 -13.33570 -13.01962 -12.88882 -12.74732 -12.38057 -12.35141 -12.09135 -11.83266 -11.69562 -11.34642 -11.18271 -11.01926 -10.77241 -10.60593 -9.77199 -9.37139 -9.07380 -8.05031 -5.41026 -0.09758 0.41400 1.24185 1.30342 1.37918 1.43576 1.49930 1.76507 1.81301 2.21220 2.32594 2.47830 3.09575 3.25809 3.36701 3.69274 3.78942 3.95552 4.04984 4.13563 4.18561 4.19978 4.23742 4.44552 4.47144 4.53881 4.67085 4.81776 4.86279 4.90667 4.97114 5.02278 5.03575 5.08182 5.12706 5.40399 5.49382 5.52465 5.70876 5.81366 6.06509 6.17555 6.28256 6.63144 7.00547 7.04308 7.76016 7.98312 9.16229 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.002430 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.188561 B =11517.562992 C =12121.672552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.092 3.908 3 N -0.591 5.591 4 C 0.117 3.883 5 C 0.150 3.850 6 N -0.753 5.753 7 C -0.241 4.241 8 H 0.052 0.948 9 C -0.064 4.064 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.244 1.244 15 C 0.591 3.409 16 O -0.571 6.571 17 C -0.023 4.023 18 C -0.171 4.171 19 C 0.096 3.904 20 C 0.014 3.986 21 C -0.175 4.175 22 C -0.220 4.220 23 C -0.022 4.022 24 O -0.186 6.186 25 N -0.344 5.344 26 H 0.467 0.533 27 N -0.218 5.218 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.004 0.996 36 H 0.034 0.966 37 H 0.369 0.631 38 H 0.260 0.740 39 H 0.158 0.842 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.179 -11.214 28.695 37.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 N -0.322 5.322 4 C -0.006 4.006 5 C 0.022 3.978 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.070 0.930 9 C -0.255 4.255 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.168 1.168 15 C 0.379 3.621 16 O -0.448 6.448 17 C -0.180 4.180 18 C -0.199 4.199 19 C -0.029 4.029 20 C -0.037 4.037 21 C -0.195 4.195 22 C -0.238 4.238 23 C -0.090 4.090 24 O -0.081 6.081 25 N -0.064 5.064 26 H 0.317 0.683 27 N -0.056 5.056 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.022 0.978 36 H 0.052 0.948 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.176 0.824 40 H 0.196 0.804 41 H 0.198 0.802 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -21.031 -11.309 27.915 36.735 hybrid contribution 0.215 1.017 -0.121 1.046 sum -20.816 -10.293 27.795 36.219 Atomic orbital electron populations 1.22008 0.94190 1.03318 1.01305 1.22176 0.95854 0.79943 1.04960 1.47833 1.63306 1.15760 1.05327 1.21512 0.94513 0.99094 0.85522 1.20952 0.94252 0.95879 0.86695 1.42480 1.08422 1.64863 1.24226 1.18974 0.86966 1.27551 1.03722 0.93005 1.25588 0.98620 1.02086 0.99213 1.69889 1.19242 1.50513 1.23596 0.85340 0.79837 0.78726 0.77497 1.20669 1.21662 1.16835 1.17356 0.76742 0.85181 0.82841 1.90794 1.49715 1.17273 1.87063 1.21450 1.09286 0.93009 0.94293 1.21859 1.06556 1.01300 0.90183 1.18180 1.06227 0.90031 0.88510 1.18871 1.08365 0.88597 0.87868 1.22231 1.04275 1.00526 0.92507 1.22161 1.06362 0.96213 0.99092 1.25116 1.02239 0.99129 0.82556 1.84106 1.66703 1.38388 1.18913 1.43594 1.46206 1.14817 1.01817 0.68255 1.73704 1.17554 1.15163 0.99192 0.93464 0.93097 0.89213 0.89290 0.87563 0.87487 0.90877 0.97792 0.94773 0.79715 0.93119 0.82446 0.80425 0.80224 0.74222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.76 71.99 0.70 -1.89 16 2 C 0.09 1.98 5.70 86.38 0.49 2.48 16 3 N -0.59 -17.55 2.49 -825.31 -2.05 -19.61 16 4 C 0.12 3.91 5.53 86.38 0.48 4.39 16 5 C 0.15 6.36 6.58 86.38 0.57 6.93 16 6 N -0.75 -37.76 5.41 -343.45 -1.86 -39.61 16 7 C -0.24 -14.62 10.47 84.03 0.88 -13.74 16 8 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 9 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 10 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 11 Si 0.96 46.73 27.73 68.60 1.90 48.63 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.24 -10.49 6.52 99.48 0.65 -9.84 16 15 C 0.59 19.94 7.63 86.76 0.66 20.60 16 16 O -0.57 -23.92 16.47 -3.93 -0.06 -23.99 16 17 C -0.02 -0.61 6.66 42.36 0.28 -0.33 16 18 C -0.17 -4.34 10.77 22.69 0.24 -4.09 16 19 C 0.10 1.76 7.10 40.51 0.29 2.05 16 20 C 0.01 0.23 7.17 24.18 0.17 0.40 16 21 C -0.18 -1.73 10.85 22.43 0.24 -1.49 16 22 C -0.22 -1.77 10.88 22.12 0.24 -1.53 16 23 C -0.02 -0.21 12.08 67.02 0.81 0.60 16 24 O -0.19 -3.21 10.68 -7.00 -0.07 -3.29 16 25 N -0.34 -4.67 6.90 -48.73 -0.34 -5.01 16 26 H 0.47 2.06 8.96 -220.00 -1.97 0.09 16 27 N -0.22 -4.27 7.54 -48.38 -0.36 -4.63 16 28 H 0.05 0.91 7.14 -2.39 -0.02 0.89 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.78 8.02 -2.39 -0.02 1.76 16 32 H 0.11 2.18 5.30 -2.39 -0.01 2.16 16 33 H 0.11 2.99 8.07 -2.39 -0.02 2.97 16 34 H 0.07 2.68 7.36 -2.39 -0.02 2.66 16 35 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.37 17.21 5.53 -92.71 -0.51 16.70 16 38 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 39 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 42 H 0.24 0.32 8.06 -2.91 -0.02 0.29 16 Total: -1.00 -84.58 360.16 2.51 -82.07 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -1.47 Total: 19.15 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.53 Total: 10.93 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -4.31 Total: -133.51 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.14 Total: -27.27 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.90 Total: 48.63 kcal Total: -84.58 2.51 -82.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754068693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.696 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds