Wall clock time and date at job start Tue Mar 31 2020 14:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.36937 * 119.99744 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00271 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99755 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47105 * 89.99895 * 10 8 6 12 12 H 1.48501 * 109.46968 * 209.99788 * 10 8 6 13 13 H 1.48501 * 109.47190 * 329.99996 * 10 8 6 14 14 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 15 15 C 1.34770 * 120.00256 * 84.99846 * 14 2 1 16 16 O 1.21633 * 120.00036 * 359.97438 * 15 14 2 17 17 C 1.47215 * 120.00151 * 180.02562 * 15 14 2 18 18 C 1.37968 * 126.81356 * 359.67937 * 17 15 14 19 19 N 1.34137 * 107.93699 * 179.83822 * 18 17 15 20 20 C 1.46502 * 125.13661 * 180.13484 * 19 18 17 21 21 N 1.39763 * 109.72866 * 0.44175 * 19 18 17 22 22 C 1.31587 * 109.05116 * 359.72708 * 21 19 18 23 23 C 1.47661 * 126.54671 * 179.97438 * 22 21 19 24 24 C 1.36012 * 125.93301 * 324.99919 * 23 22 21 25 25 C 1.40910 * 106.73202 * 179.97438 * 24 23 22 26 26 C 1.34748 * 107.04309 * 359.97438 * 25 24 23 27 27 O 1.34306 * 108.67948 * 359.75922 * 26 25 24 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 34 34 H 0.97002 * 120.00532 * 180.02562 * 9 8 6 35 35 H 0.97005 * 119.99374 * 264.99912 * 14 2 1 36 36 H 1.07996 * 126.03134 * 0.02562 * 18 17 15 37 37 H 1.09008 * 109.46701 * 270.33164 * 20 19 18 38 38 H 1.09005 * 109.47258 * 30.33007 * 20 19 18 39 39 H 1.09000 * 109.47509 * 150.33198 * 20 19 18 40 40 H 1.08001 * 126.63595 * 0.02562 * 24 23 22 41 41 H 1.07998 * 126.47629 * 180.02562 * 25 24 23 42 42 H 1.07996 * 125.66476 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8440 3.0515 8 6 5.5673 -1.5380 2.1513 9 7 6.2245 -2.1262 3.1282 10 14 6.4963 -0.8365 0.6903 11 1 6.8569 0.5775 0.9656 12 1 7.7325 -1.6275 0.4636 13 1 5.6379 -0.9018 -0.5198 14 7 2.0184 -0.6905 -1.1962 15 6 2.1471 -0.0181 -2.3571 16 8 1.8574 1.1620 -2.4118 17 6 2.6374 -0.7121 -3.5593 18 6 3.0090 -2.0373 -3.6551 19 7 3.3904 -2.2690 -4.9201 20 6 3.8564 -3.5579 -5.4376 21 7 3.2827 -1.0933 -5.6681 22 6 2.8339 -0.1300 -4.8921 23 6 2.5775 1.2696 -5.2868 24 6 3.2992 1.9901 -6.1868 25 6 2.7058 3.2664 -6.2540 26 6 1.6623 3.2621 -5.4014 27 8 1.5843 2.0524 -4.8231 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2951 33 1 3.9825 -0.4621 0.4319 34 1 7.1914 -2.1952 3.0897 35 1 2.2491 -1.6317 -1.1527 36 1 2.9926 -2.7612 -2.8538 37 1 4.9373 -3.6291 -5.3152 38 1 3.3744 -4.3661 -4.8874 39 1 3.6045 -3.6374 -6.4951 40 1 4.1600 1.6496 -6.7432 41 1 3.0262 4.0917 -6.8725 42 1 0.9967 4.0922 -5.2167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754267476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:37 Heat of formation + Delta-G solvation = 77.250364 kcal Electronic energy + Delta-G solvation = -26600.076588 eV Core-core repulsion = 22777.540441 eV Total energy + Delta-G solvation = -3822.536147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43917 -41.21954 -39.12669 -36.18775 -33.94353 -33.68311 -32.86667 -31.86765 -30.82333 -29.88158 -29.50732 -26.78066 -25.95270 -23.58067 -22.29242 -22.17252 -21.55883 -20.83949 -19.91436 -19.78984 -18.23005 -17.53196 -17.08872 -16.15566 -16.07245 -15.67148 -15.58895 -14.94054 -14.78825 -14.35576 -14.09990 -14.05967 -13.48178 -13.10949 -13.03292 -12.81119 -12.78451 -12.70702 -12.59346 -12.37131 -12.34109 -12.18047 -11.83968 -11.18080 -11.08176 -10.90418 -10.48670 -10.15557 -10.14625 -9.84004 -9.65602 -9.63468 -8.98710 -8.94728 -8.70433 -8.20199 -7.28923 -5.81626 -3.17409 1.12560 1.38687 1.90002 2.26322 2.72657 3.04455 3.33564 3.39527 3.43125 3.46258 3.64184 4.21308 4.26793 4.55222 4.60146 4.81404 4.97503 5.00924 5.01773 5.07963 5.11504 5.25500 5.31424 5.42543 5.48912 5.61136 5.65778 5.84839 5.85386 5.94008 5.97030 6.09054 6.16786 6.35498 6.41540 6.44162 6.51792 6.61880 6.89985 7.06438 7.31489 7.84708 7.94614 8.37271 8.56653 9.16629 9.89016 10.08888 11.36571 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004247 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.558578 B = 6590.820232 C = 7304.149204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 H 0.088 0.912 4 C 0.149 3.851 5 N -0.756 5.756 6 C -0.246 4.246 7 H 0.091 0.909 8 C 0.008 3.992 9 N -0.933 5.933 10 Si 0.881 3.119 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 N -0.715 5.715 15 C 0.589 3.411 16 O -0.532 6.532 17 C -0.268 4.268 18 C 0.107 3.893 19 N -0.359 5.359 20 C 0.095 3.905 21 N -0.269 5.269 22 C 0.194 3.806 23 C 0.062 3.938 24 C -0.173 4.173 25 C -0.224 4.224 26 C -0.021 4.021 27 O -0.133 6.133 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.363 0.637 34 H 0.260 0.740 35 H 0.399 0.601 36 H 0.191 0.809 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 1.087 -19.944 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.106 0.894 4 C 0.021 3.979 5 N -0.402 5.402 6 C -0.375 4.375 7 H 0.109 0.891 8 C -0.188 4.188 9 N -0.581 5.581 10 Si 0.711 3.289 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.204 1.204 14 N -0.366 5.366 15 C 0.375 3.625 16 O -0.409 6.409 17 C -0.283 4.283 18 C -0.042 4.042 19 N -0.139 5.139 20 C -0.045 4.045 21 N -0.092 5.092 22 C 0.026 3.974 23 C 0.009 3.991 24 C -0.194 4.194 25 C -0.243 4.243 26 C -0.091 4.091 27 O -0.025 6.025 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.233 0.767 36 H 0.208 0.792 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.979 1.226 -20.740 23.048 hybrid contribution 0.993 0.157 -0.194 1.024 sum -8.985 1.384 -20.934 22.823 Atomic orbital electron populations 1.22085 0.95210 1.01939 1.02283 1.21278 0.93726 0.97974 0.84198 0.89428 1.20970 0.85410 0.97587 0.93899 1.42724 1.01388 1.71419 1.24657 1.19057 0.89861 1.29505 0.99121 0.89103 1.24638 0.96147 1.00514 0.97515 1.69695 1.07335 1.48510 1.32519 0.86618 0.79762 0.79154 0.83368 1.21016 1.21763 1.20366 1.45854 1.67492 1.14048 1.09230 1.17058 0.77379 0.86217 0.81805 1.90796 1.50443 1.14925 1.84715 1.21414 1.18226 0.93452 0.95246 1.23095 0.95554 0.97139 0.88409 1.48110 1.49877 1.09065 1.06863 1.22073 1.01173 0.79243 1.02050 1.77397 1.23778 0.90628 1.17368 1.20077 0.97349 0.89705 0.90231 1.18472 0.92746 0.88909 0.98984 1.21757 1.02592 0.94126 1.00906 1.21704 0.99171 0.98801 1.04593 1.24197 1.01301 0.87067 0.96552 1.84267 1.43188 1.20919 1.54176 0.92550 0.91577 0.92265 0.93966 0.94990 0.80369 0.93028 0.76705 0.79174 0.89951 0.88596 0.88756 0.83284 0.83230 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.71 16 2 C 0.13 2.13 2.73 -67.93 -0.19 1.95 16 3 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 4 C 0.15 2.73 5.82 -4.04 -0.02 2.71 16 5 N -0.76 -17.47 5.24 -59.91 -0.31 -17.78 16 6 C -0.25 -6.79 10.47 -15.06 -0.16 -6.95 16 7 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 8 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 9 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 10 Si 0.88 22.27 27.74 -169.99 -4.71 17.55 16 11 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 14 N -0.71 -11.14 4.51 -54.95 -0.25 -11.39 16 15 C 0.59 10.15 7.77 -12.62 -0.10 10.05 16 16 O -0.53 -10.60 14.26 -15.16 -0.22 -10.81 16 17 C -0.27 -4.16 6.32 -102.91 -0.65 -4.81 16 18 C 0.11 1.27 10.93 -16.64 -0.18 1.08 16 19 N -0.36 -4.06 3.95 -67.65 -0.27 -4.33 16 20 C 0.10 0.59 11.39 59.85 0.68 1.27 16 21 N -0.27 -3.84 12.51 34.50 0.43 -3.41 16 22 C 0.19 3.09 7.29 -80.68 -0.59 2.50 16 23 C 0.06 0.98 6.73 -36.53 -0.25 0.73 16 24 C -0.17 -2.35 10.85 -39.37 -0.43 -2.78 16 25 C -0.22 -2.59 10.89 -39.81 -0.43 -3.02 16 26 C -0.02 -0.25 12.08 29.50 0.36 0.10 16 27 O -0.13 -2.13 8.77 -15.80 -0.14 -2.27 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.36 8.50 5.20 -40.82 -0.21 8.29 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.40 5.53 7.55 -40.82 -0.31 5.22 16 36 H 0.19 1.59 7.48 -52.49 -0.39 1.20 16 37 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.10 0.34 8.13 -51.93 -0.42 -0.08 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -37.12 363.41 -6.46 -43.58 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.55 Total: 10.28 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.70 Total: 1.25 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.38 Total: -65.06 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.35 Total: -13.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.12 -6.46 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754267476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.834 kcal (2) G-P(sol) polarization free energy of solvation -37.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds