Wall clock time and date at job start Tue Mar 31 2020 14:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99913 * 2 1 4 4 C 1.38185 * 120.21770 * 359.72315 * 3 2 1 5 5 C 1.38818 * 120.68053 * 179.76499 * 4 3 2 6 6 C 1.36725 * 120.58542 * 0.51463 * 5 4 3 7 7 C 1.39244 * 119.75417 * 359.74053 * 6 5 4 8 8 C 1.46904 * 135.43873 * 179.97438 * 7 6 5 9 9 C 1.47362 * 126.81563 * 0.04817 * 8 7 6 10 10 O 1.21622 * 120.00124 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00122 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00196 * 179.97438 * 11 9 8 13 13 H 1.09010 * 109.46735 * 324.98980 * 12 11 9 14 14 C 1.52992 * 109.47524 * 84.99483 * 12 11 9 15 15 C 1.53001 * 109.47225 * 204.99801 * 12 11 9 16 16 N 1.46502 * 109.47047 * 54.99250 * 15 12 11 17 17 C 1.36940 * 120.00264 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99319 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00337 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00276 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00068 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47163 * 89.99703 * 21 19 17 23 23 H 1.48504 * 109.46927 * 209.99865 * 21 19 17 24 24 H 1.48499 * 109.46670 * 329.99918 * 21 19 17 25 25 N 1.31598 * 106.37024 * 180.02562 * 8 7 6 26 26 N 1.28391 * 111.93850 * 0.02562 * 25 8 7 27 27 H 0.97004 * 124.38586 * 180.02562 * 26 25 8 28 28 C 1.37100 * 111.22905 * 359.97438 * 26 25 8 29 29 H 1.09002 * 109.47382 * 300.00034 * 1 2 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00141 * 1 2 3 32 32 H 1.08004 * 119.65667 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.71254 * 180.23713 * 5 4 3 34 34 H 1.07993 * 120.11852 * 179.72292 * 6 5 4 35 35 H 0.97002 * 119.99584 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47186 * 180.02562 * 14 12 11 37 37 H 1.08996 * 109.47251 * 299.99966 * 14 12 11 38 38 H 1.09003 * 109.46881 * 59.99875 * 14 12 11 39 39 H 1.08991 * 109.47384 * 174.99297 * 15 12 11 40 40 H 1.08999 * 109.46824 * 295.00039 * 15 12 11 41 41 H 0.97006 * 120.00537 * 0.02562 * 16 15 12 42 42 H 0.97002 * 120.00677 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2979 2.3728 -0.0058 5 6 1.9180 3.6148 -0.0009 6 6 3.2819 3.7113 -0.0009 7 6 4.0566 2.5543 -0.0003 8 6 5.4954 2.2581 -0.0006 9 6 6.5982 3.2355 -0.0007 10 8 6.3547 4.4271 -0.0010 11 7 7.8768 2.8090 -0.0004 12 6 8.9731 3.7806 -0.0011 13 1 8.6867 4.6512 -0.5913 14 6 9.2714 4.2141 1.4355 15 6 10.2220 3.1401 -0.6102 16 7 9.9031 2.6180 -1.9414 17 6 10.8721 1.9973 -2.6837 18 1 11.8714 1.8923 -2.2875 19 6 10.5702 1.5031 -3.9452 20 7 11.5017 0.9070 -4.6588 21 14 8.8421 1.6855 -4.6307 22 1 8.7387 2.9639 -5.3791 23 1 8.5500 0.5519 -5.5445 24 1 7.8639 1.6854 -3.5134 25 7 5.6041 0.9466 -0.0003 26 7 4.4568 0.3702 -0.0003 27 1 4.3267 -0.5911 0.0002 28 6 3.4395 1.2893 -0.0002 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 0.2194 2.3139 -0.0099 33 1 1.3180 4.5128 -0.0017 34 1 3.7564 4.6814 -0.0017 35 1 8.0710 1.8586 0.0002 36 1 10.0868 4.9374 1.4349 37 1 8.3818 4.6704 1.8695 38 1 9.5578 3.3435 2.0256 39 1 11.0105 3.8879 -0.6926 40 1 10.5601 2.3242 0.0285 41 1 9.0057 2.7127 -2.2975 42 1 11.2907 0.5613 -5.5402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754269059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:28 Heat of formation + Delta-G solvation = 30.690424 kcal Electronic energy + Delta-G solvation = -26222.488223 eV Core-core repulsion = 22397.933086 eV Total energy + Delta-G solvation = -3824.555138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66763 -39.83097 -39.30080 -37.03987 -36.24913 -33.71340 -32.49975 -31.30987 -30.67084 -30.31541 -29.32168 -27.72690 -25.96012 -24.46706 -23.14776 -22.58099 -22.07781 -20.72123 -20.09206 -19.01108 -18.01455 -17.69786 -17.11378 -16.43451 -16.22515 -15.88564 -15.60581 -15.38531 -15.08029 -14.73785 -14.35201 -14.07818 -13.82937 -13.73176 -12.87248 -12.82389 -12.61639 -12.57311 -12.35905 -12.21191 -11.89085 -11.82831 -11.67807 -11.50041 -11.15885 -11.06766 -10.85732 -10.47809 -10.11342 -9.96397 -9.95172 -9.59106 -9.08846 -8.92521 -8.82055 -7.91600 -7.23858 -5.76327 -3.12033 0.65321 1.07533 1.79128 2.49597 2.74429 3.25427 3.30700 3.40334 3.45426 3.47919 3.62238 4.18094 4.29335 4.50934 4.60990 4.68729 4.72398 4.76109 4.91354 5.07754 5.10150 5.16588 5.29298 5.38907 5.51053 5.52578 5.60768 5.78991 5.86636 5.95683 6.07179 6.16650 6.29521 6.34475 6.38458 6.41159 6.61954 6.68381 6.84670 6.93190 7.54548 7.83072 7.99252 8.36603 8.42660 9.21520 9.94084 10.13384 11.41875 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.003651 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.847192 B = 7666.983098 C = 8833.668682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.129 3.871 4 C -0.184 4.184 5 C -0.102 4.102 6 C -0.078 4.078 7 C -0.072 4.072 8 C 0.001 3.999 9 C 0.606 3.394 10 O -0.535 6.535 11 N -0.700 5.700 12 C 0.129 3.871 13 H 0.090 0.910 14 C -0.157 4.157 15 C 0.149 3.851 16 N -0.756 5.756 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.933 5.933 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 N -0.191 5.191 26 N -0.402 5.402 27 H 0.450 0.550 28 C 0.044 3.956 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.363 0.637 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.584 1.046 14.111 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.122 4.122 6 C -0.098 4.098 7 C -0.079 4.079 8 C -0.170 4.170 9 C 0.390 3.610 10 O -0.410 6.410 11 N -0.351 5.351 12 C 0.025 3.975 13 H 0.108 0.892 14 C -0.216 4.216 15 C 0.021 3.979 16 N -0.402 5.402 17 C -0.374 4.374 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.581 5.581 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.203 1.203 25 N -0.022 5.022 26 N -0.122 5.122 27 H 0.296 0.704 28 C -0.070 4.070 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.196 0.804 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.619 0.779 14.037 26.632 hybrid contribution -2.053 -0.435 -0.737 2.224 sum -24.672 0.345 13.301 28.031 Atomic orbital electron populations 1.23076 0.77716 1.04128 1.01629 1.86015 1.21970 1.26470 1.89145 1.17732 0.87585 0.85377 1.01195 1.20993 0.99839 0.91408 1.08266 1.20580 0.94174 0.96991 1.00428 1.20316 0.92745 0.97678 0.99070 1.19232 0.91228 0.92488 1.04990 1.22810 0.92911 0.89596 1.11682 1.16583 0.81418 0.86356 0.76689 1.90773 1.83948 1.15310 1.51008 1.45924 1.04605 1.11522 1.73044 1.21391 0.86679 0.92454 0.96966 0.89154 1.22094 1.01980 1.01583 0.95955 1.20978 0.93254 0.96599 0.87069 1.42719 1.10871 1.70996 1.15586 1.19044 0.92468 1.28984 0.96892 0.89073 1.24637 0.96959 1.00391 0.96879 1.69696 1.32104 1.43963 1.12352 0.86602 0.85892 0.77464 0.78943 1.21024 1.21778 1.20297 1.73004 1.08150 1.09150 1.11914 1.43004 1.00399 1.09589 1.59247 0.70392 1.18352 0.88527 0.90353 1.09753 0.92390 0.88102 0.92351 0.84650 0.84934 0.84023 0.75353 0.91319 0.92242 0.92340 0.93762 0.94841 0.80386 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.99 10.51 -19.49 -0.20 -3.19 16 3 C 0.13 1.40 6.70 -39.11 -0.26 1.13 16 4 C -0.18 -1.67 9.03 -39.39 -0.36 -2.02 16 5 C -0.10 -0.99 9.97 -39.91 -0.40 -1.39 16 6 C -0.08 -0.98 9.86 -39.76 -0.39 -1.37 16 7 C -0.07 -1.05 6.33 -105.07 -0.67 -1.71 16 8 C 0.00 0.01 7.32 -80.75 -0.59 -0.58 16 9 C 0.61 10.50 7.78 -12.55 -0.10 10.40 16 10 O -0.54 -10.07 16.04 5.26 0.08 -9.99 16 11 N -0.70 -11.64 4.51 -54.90 -0.25 -11.89 16 12 C 0.13 2.11 2.73 -67.94 -0.19 1.92 16 13 H 0.09 1.59 7.58 -51.92 -0.39 1.20 16 14 C -0.16 -2.07 9.48 37.15 0.35 -1.72 16 15 C 0.15 2.81 5.82 -4.04 -0.02 2.78 16 16 N -0.76 -18.07 5.24 -59.91 -0.31 -18.38 16 17 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 18 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 21 Si 0.88 22.97 27.74 -169.99 -4.71 18.25 16 22 H -0.28 -7.41 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 24 H -0.28 -6.96 6.52 56.52 0.37 -6.59 16 25 N -0.19 -2.86 11.80 34.46 0.41 -2.45 16 26 N -0.40 -5.02 6.85 32.41 0.22 -4.80 16 27 H 0.45 4.16 8.96 -190.48 -1.71 2.46 16 28 C 0.04 0.57 7.32 -84.07 -0.62 -0.05 16 29 H 0.06 0.23 7.68 -51.93 -0.40 -0.17 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 32 H 0.14 0.81 6.27 -52.48 -0.33 0.48 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.79 7.63 -52.49 -0.40 1.39 16 35 H 0.41 6.76 8.34 -40.82 -0.34 6.42 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.36 8.79 5.20 -40.82 -0.21 8.58 16 42 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -35.27 358.11 -7.82 -43.09 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.73 Total: 11.25 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.50 Total: 1.55 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.84 Total: -66.36 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.12 Total: -13.18 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.27 -7.82 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.780 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds