Wall clock time and date at job start Tue Mar 31 2020 14:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99913 * 2 1 4 4 C 1.38185 * 120.21770 * 359.72315 * 3 2 1 5 5 C 1.38818 * 120.68053 * 179.76499 * 4 3 2 6 6 C 1.36725 * 120.58542 * 0.51463 * 5 4 3 7 7 C 1.39244 * 119.75417 * 359.74053 * 6 5 4 8 8 C 1.46904 * 135.43873 * 179.97438 * 7 6 5 9 9 C 1.47362 * 126.81563 * 0.04817 * 8 7 6 10 10 O 1.21622 * 120.00124 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00122 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00196 * 179.97438 * 11 9 8 13 13 H 1.09010 * 109.46735 * 324.98980 * 12 11 9 14 14 C 1.52992 * 109.47524 * 84.99483 * 12 11 9 15 15 C 1.53001 * 109.47225 * 204.99801 * 12 11 9 16 16 N 1.46502 * 109.47047 * 54.99250 * 15 12 11 17 17 C 1.36940 * 120.00264 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99319 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00337 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00276 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00068 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47163 * 89.99703 * 21 19 17 23 23 H 1.48504 * 109.46927 * 209.99865 * 21 19 17 24 24 H 1.48499 * 109.46670 * 329.99918 * 21 19 17 25 25 N 1.31598 * 106.37024 * 180.02562 * 8 7 6 26 26 N 1.28391 * 111.93850 * 0.02562 * 25 8 7 27 27 H 0.97004 * 124.38586 * 180.02562 * 26 25 8 28 28 C 1.37100 * 111.22905 * 359.97438 * 26 25 8 29 29 H 1.09002 * 109.47382 * 300.00034 * 1 2 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00141 * 1 2 3 32 32 H 1.08004 * 119.65667 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.71254 * 180.23713 * 5 4 3 34 34 H 1.07993 * 120.11852 * 179.72292 * 6 5 4 35 35 H 0.97002 * 119.99584 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47186 * 180.02562 * 14 12 11 37 37 H 1.08996 * 109.47251 * 299.99966 * 14 12 11 38 38 H 1.09003 * 109.46881 * 59.99875 * 14 12 11 39 39 H 1.08991 * 109.47384 * 174.99297 * 15 12 11 40 40 H 1.08999 * 109.46824 * 295.00039 * 15 12 11 41 41 H 0.97006 * 120.00537 * 0.02562 * 16 15 12 42 42 H 0.97002 * 120.00677 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2979 2.3728 -0.0058 5 6 1.9180 3.6148 -0.0009 6 6 3.2819 3.7113 -0.0009 7 6 4.0566 2.5543 -0.0003 8 6 5.4954 2.2581 -0.0006 9 6 6.5982 3.2355 -0.0007 10 8 6.3547 4.4271 -0.0010 11 7 7.8768 2.8090 -0.0004 12 6 8.9731 3.7806 -0.0011 13 1 8.6867 4.6512 -0.5913 14 6 9.2714 4.2141 1.4355 15 6 10.2220 3.1401 -0.6102 16 7 9.9031 2.6180 -1.9414 17 6 10.8721 1.9973 -2.6837 18 1 11.8714 1.8923 -2.2875 19 6 10.5702 1.5031 -3.9452 20 7 11.5017 0.9070 -4.6588 21 14 8.8421 1.6855 -4.6307 22 1 8.7387 2.9639 -5.3791 23 1 8.5500 0.5519 -5.5445 24 1 7.8639 1.6854 -3.5134 25 7 5.6041 0.9466 -0.0003 26 7 4.4568 0.3702 -0.0003 27 1 4.3267 -0.5911 0.0002 28 6 3.4395 1.2893 -0.0002 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 0.2194 2.3139 -0.0099 33 1 1.3180 4.5128 -0.0017 34 1 3.7564 4.6814 -0.0017 35 1 8.0710 1.8586 0.0002 36 1 10.0868 4.9374 1.4349 37 1 8.3818 4.6704 1.8695 38 1 9.5578 3.3435 2.0256 39 1 11.0105 3.8879 -0.6926 40 1 10.5601 2.3242 0.0285 41 1 9.0057 2.7127 -2.2975 42 1 11.2907 0.5613 -5.5402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754269059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:27 Heat of formation + Delta-G solvation = 3.973751 kcal Electronic energy + Delta-G solvation = -26223.646745 eV Core-core repulsion = 22397.933086 eV Total energy + Delta-G solvation = -3825.713660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64563 -40.78390 -40.38479 -37.92173 -37.69869 -35.53980 -33.71545 -33.07015 -31.70114 -31.54124 -30.23060 -28.22075 -27.63705 -25.67165 -24.14086 -23.93601 -23.38353 -22.07301 -21.32016 -20.01297 -19.63274 -18.90638 -18.18812 -17.32066 -17.20674 -17.03798 -16.71795 -16.42471 -16.32715 -15.82605 -15.76434 -15.63705 -15.11799 -14.84046 -14.57029 -14.21291 -13.89032 -13.70718 -13.42883 -13.29170 -13.20423 -12.92770 -12.71310 -12.61630 -12.29919 -12.24690 -12.17265 -12.15430 -11.90376 -11.75117 -11.29720 -11.03457 -10.92889 -10.15907 -9.96894 -9.33075 -8.77167 -8.05906 -5.38013 -0.29852 0.19382 0.75226 1.32244 1.33708 1.39769 1.56201 1.96912 2.13623 2.24783 2.42647 2.66284 3.13539 3.26828 3.36824 3.54768 3.74177 3.90055 3.92030 4.10724 4.26317 4.28504 4.36483 4.41772 4.42896 4.44667 4.69343 4.77207 4.80690 4.85330 4.93956 4.99023 5.09920 5.29058 5.32166 5.45948 5.49380 5.61230 5.74341 5.83135 6.18422 6.24116 6.37326 6.67426 7.04081 7.06885 7.80584 7.97938 9.15576 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.003651 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.847192 B = 7666.983098 C = 8833.668682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.130 3.870 4 C -0.177 4.177 5 C -0.084 4.084 6 C -0.107 4.107 7 C -0.093 4.093 8 C -0.033 4.033 9 C 0.605 3.395 10 O -0.558 6.558 11 N -0.700 5.700 12 C 0.136 3.864 13 H 0.077 0.923 14 C -0.147 4.147 15 C 0.147 3.853 16 N -0.759 5.759 17 C -0.227 4.227 18 H 0.067 0.933 19 C -0.056 4.056 20 N -0.979 5.979 21 Si 0.944 3.056 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.265 1.265 25 N -0.200 5.200 26 N -0.389 5.389 27 H 0.462 0.538 28 C 0.027 3.973 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.174 0.826 33 H 0.166 0.834 34 H 0.131 0.869 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.362 0.638 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.960 1.225 15.184 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.082 3.918 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.101 4.101 8 C -0.202 4.202 9 C 0.390 3.610 10 O -0.435 6.435 11 N -0.351 5.351 12 C 0.032 3.968 13 H 0.095 0.905 14 C -0.206 4.206 15 C 0.021 3.979 16 N -0.405 5.405 17 C -0.358 4.358 18 H 0.085 0.915 19 C -0.248 4.248 20 N -0.630 5.630 21 Si 0.772 3.228 22 H -0.209 1.209 23 H -0.220 1.220 24 H -0.191 1.191 25 N -0.033 5.033 26 N -0.112 5.112 27 H 0.310 0.690 28 C -0.086 4.086 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.191 0.809 33 H 0.184 0.816 34 H 0.149 0.851 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.195 0.805 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.018 0.969 15.161 30.129 hybrid contribution -1.103 -0.534 -0.979 1.569 sum -27.122 0.436 14.181 30.609 Atomic orbital electron populations 1.23438 0.75390 1.05899 1.02932 1.86015 1.24320 1.25717 1.88782 1.17893 0.86909 0.86665 1.00355 1.21444 1.01630 0.90320 1.06365 1.20986 0.93119 0.98715 0.97476 1.20406 0.94104 0.96757 1.01464 1.19458 0.90733 0.93947 1.05936 1.22679 0.93458 0.89857 1.14231 1.16765 0.81742 0.86396 0.76116 1.90740 1.84318 1.16242 1.52202 1.45937 1.04644 1.11500 1.73029 1.21307 0.85355 0.91528 0.98589 0.90510 1.22015 1.02520 1.02460 0.93578 1.21169 0.94857 0.97010 0.84889 1.42756 1.09894 1.70750 1.17087 1.19068 0.92315 1.27498 0.96884 0.91466 1.25317 1.00589 1.01223 0.97624 1.69843 1.34244 1.46057 1.12871 0.85579 0.81725 0.77101 0.78347 1.20879 1.21972 1.19053 1.72900 1.09356 1.08970 1.12027 1.43038 0.99926 1.10219 1.58033 0.68996 1.18588 0.89577 0.89730 1.10738 0.90831 0.86342 0.91145 0.80867 0.81629 0.85094 0.75343 0.89488 0.92503 0.91169 0.92943 0.93801 0.80470 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.27 10.51 -92.65 -0.97 -6.24 16 3 C 0.13 2.50 6.70 22.58 0.15 2.66 16 4 C -0.18 -2.57 9.03 22.40 0.20 -2.36 16 5 C -0.08 -1.39 9.97 22.05 0.22 -1.17 16 6 C -0.11 -2.63 9.86 22.16 0.22 -2.41 16 7 C -0.09 -2.72 6.33 -20.15 -0.13 -2.85 16 8 C -0.03 -1.09 7.32 43.85 0.32 -0.77 16 9 C 0.60 21.29 7.78 86.64 0.67 21.97 16 10 O -0.56 -21.44 16.04 -4.10 -0.07 -21.51 16 11 N -0.70 -23.25 4.51 -445.85 -2.01 -25.27 16 12 C 0.14 4.35 2.73 44.99 0.12 4.47 16 13 H 0.08 2.69 7.58 -2.38 -0.02 2.67 16 14 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 15 C 0.15 5.43 5.82 86.38 0.50 5.93 16 16 N -0.76 -36.04 5.24 -343.46 -1.80 -37.84 16 17 C -0.23 -13.00 10.47 84.03 0.88 -12.11 16 18 H 0.07 4.13 8.06 -2.91 -0.02 4.10 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.98 -63.39 13.97 21.65 0.30 -63.09 16 21 Si 0.94 48.04 27.74 68.60 1.90 49.94 16 22 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 24 H -0.27 -12.82 6.52 99.48 0.65 -12.17 16 25 N -0.20 -6.01 11.80 -44.88 -0.53 -6.54 16 26 N -0.39 -9.54 6.85 -51.37 -0.35 -9.89 16 27 H 0.46 8.23 8.96 -220.03 -1.97 6.26 16 28 C 0.03 0.67 7.32 39.25 0.29 0.96 16 29 H 0.07 0.27 7.68 -2.39 -0.02 0.25 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.31 7.65 -2.38 -0.02 0.29 16 32 H 0.17 1.15 6.27 -2.91 -0.02 1.13 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.13 3.39 7.63 -2.91 -0.02 3.37 16 35 H 0.41 13.52 8.34 -92.71 -0.77 12.75 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.36 17.33 5.20 -92.70 -0.48 16.85 16 42 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -77.62 358.11 -0.01 -77.63 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -2.19 Total: 33.12 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.71 Total: 9.67 kcal Atomic # 7 Polarization: -138.22 SS G_CDS: -4.39 Total: -142.61 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.04 Total: -27.75 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.90 Total: 49.94 kcal Total: -77.62 -0.01 -77.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.603 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds