Wall clock time and date at job start Tue Mar 31 2020 14:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47488 * 2 1 4 4 C 1.52999 * 109.46937 * 119.99831 * 2 1 3 5 5 N 1.46508 * 109.47174 * 175.00042 * 4 2 1 6 6 C 1.46503 * 119.99932 * 269.99797 * 5 4 2 7 7 C 1.36929 * 119.99929 * 89.99963 * 5 4 2 8 8 H 1.08003 * 120.00684 * 23.64602 * 7 5 4 9 9 C 1.38817 * 119.99799 * 203.64550 * 7 5 4 10 10 N 1.31614 * 120.00049 * 11.26767 * 9 7 5 11 11 Si 1.86798 * 119.99847 * 191.26975 * 9 7 5 12 12 H 1.48499 * 109.47656 * 59.99960 * 11 9 7 13 13 H 1.48506 * 109.47228 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47358 * 299.99584 * 11 9 7 15 15 N 1.46502 * 109.47140 * 239.99830 * 2 1 3 16 16 C 1.34771 * 120.00194 * 85.00575 * 15 2 1 17 17 O 1.21625 * 119.99786 * 359.97438 * 16 15 2 18 18 C 1.47217 * 120.00260 * 180.27896 * 16 15 2 19 19 C 1.37961 * 126.80990 * 359.74052 * 18 16 15 20 20 N 1.34146 * 107.93762 * 180.02562 * 19 18 16 21 21 H 0.96995 * 125.13551 * 180.02562 * 20 19 18 22 22 N 1.39769 * 109.72086 * 359.97438 * 20 19 18 23 23 C 1.31583 * 109.05167 * 359.70578 * 22 20 19 24 24 C 1.47656 * 126.54080 * 180.29164 * 23 22 20 25 25 C 1.36019 * 125.93894 * 325.18013 * 24 23 22 26 26 C 1.40900 * 106.74128 * 179.97438 * 25 24 23 27 27 C 1.34748 * 107.03825 * 0.02562 * 26 25 24 28 28 O 1.34305 * 108.68732 * 359.77168 * 27 26 25 29 29 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47221 * 300.00050 * 1 2 3 31 31 H 1.09004 * 109.46855 * 60.00511 * 1 2 3 32 32 H 1.08995 * 109.47474 * 294.99675 * 4 2 1 33 33 H 1.08996 * 109.47443 * 55.00002 * 4 2 1 34 34 H 1.09006 * 109.46693 * 94.57679 * 6 5 4 35 35 H 1.08998 * 109.47231 * 214.57865 * 6 5 4 36 36 H 1.09000 * 109.47320 * 334.58318 * 6 5 4 37 37 H 0.97001 * 120.00049 * 179.97438 * 10 9 7 38 38 H 0.97001 * 119.99532 * 264.99713 * 15 2 1 39 39 H 1.07997 * 126.03926 * 0.02562 * 19 18 16 40 40 H 1.08002 * 126.62958 * 359.97438 * 25 24 23 41 41 H 1.08001 * 126.48000 * 180.02562 * 26 25 24 42 42 H 1.08001 * 125.66378 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1258 -1.9920 0.5614 7 6 4.2798 0.1648 1.7241 8 1 3.8835 0.8068 2.4969 9 6 5.5797 0.3445 1.2715 10 7 5.9916 -0.2795 0.1883 11 14 6.7444 1.4720 2.1998 12 1 6.9137 0.9740 3.5885 13 1 8.0628 1.4927 1.5166 14 1 6.1825 2.8463 2.2318 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8575 1.1616 -2.4118 18 6 2.6320 -0.7139 -3.5606 19 6 2.9971 -2.0407 -3.6579 20 7 3.3793 -2.2724 -4.9227 21 1 3.6855 -3.1265 -5.2658 22 7 3.2684 -1.0975 -5.6716 23 6 2.8166 -0.1351 -4.8964 24 6 2.5502 1.2618 -5.2938 25 6 3.2620 1.9834 -6.2010 26 6 2.6615 3.2562 -6.2683 27 6 1.6244 3.2495 -5.4080 28 8 1.5572 2.0417 -4.8245 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 4.3539 -1.7640 -0.4799 35 1 5.0467 -2.2394 1.0894 36 1 3.4423 -2.8399 0.6062 37 1 6.8999 -0.1536 -0.1282 38 1 2.2490 -1.6318 -1.1525 39 1 2.9786 -2.7652 -2.8571 40 1 4.1213 1.6458 -6.7614 41 1 2.9735 4.0812 -6.8916 42 1 0.9559 4.0769 -5.2212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754333523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:36 Heat of formation + Delta-G solvation = 82.649488 kcal Electronic energy + Delta-G solvation = -27239.206993 eV Core-core repulsion = 23416.904969 eV Total energy + Delta-G solvation = -3822.302024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23355 -40.91031 -38.68963 -36.17880 -33.92289 -32.99646 -32.17220 -31.56613 -30.59635 -29.28648 -28.66805 -26.16557 -25.56892 -23.32726 -22.96305 -21.69706 -21.28893 -20.33523 -19.68537 -19.42755 -18.23130 -17.03690 -16.73993 -16.09714 -15.72631 -15.26657 -14.87169 -14.77983 -14.69322 -14.08920 -13.72432 -13.51234 -13.24699 -13.09256 -12.78050 -12.61280 -12.52019 -12.19059 -12.10956 -11.88537 -11.39456 -11.12254 -10.97921 -10.80027 -10.75047 -10.53101 -10.19462 -10.11678 -9.95427 -9.82475 -9.65809 -9.23302 -8.76386 -8.54807 -8.24298 -8.01877 -6.71706 -5.70711 -3.16134 1.33476 1.68813 2.35512 2.53068 2.97150 3.32945 3.41930 3.47160 3.47575 3.84575 4.09466 4.50337 4.53751 4.70314 5.12359 5.19402 5.21219 5.37545 5.48088 5.52447 5.57973 5.75658 5.88337 5.95192 6.03384 6.06352 6.13248 6.15668 6.30337 6.36819 6.52714 6.56683 6.63425 6.66832 6.96765 7.03466 7.25559 7.28276 7.34130 7.50279 7.64122 7.82534 8.28063 8.41688 9.01801 9.25460 9.87846 10.35927 11.34636 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.004469 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.770245 B = 6263.955147 C = 6570.480217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.283 1.283 15 N -0.697 5.697 16 C 0.591 3.409 17 O -0.536 6.536 18 C -0.254 4.254 19 C 0.109 3.891 20 N -0.460 5.460 21 H 0.445 0.555 22 N -0.270 5.270 23 C 0.194 3.806 24 C 0.065 3.935 25 C -0.174 4.174 26 C -0.224 4.224 27 C -0.022 4.022 28 O -0.132 6.132 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.042 0.958 36 H -0.007 1.007 37 H 0.251 0.749 38 H 0.389 0.611 39 H 0.190 0.810 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -4.071 -10.383 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.346 5.346 16 C 0.377 3.623 17 O -0.414 6.414 18 C -0.269 4.269 19 C -0.041 4.041 20 N -0.167 5.167 21 H 0.289 0.711 22 N -0.094 5.094 23 C 0.027 3.973 24 C 0.012 3.988 25 C -0.195 4.195 26 C -0.243 4.243 27 C -0.093 4.093 28 O -0.024 6.024 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.011 0.989 37 H 0.061 0.939 38 H 0.223 0.777 39 H 0.207 0.793 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.883 -3.646 -11.380 14.890 hybrid contribution 1.125 0.028 0.961 1.480 sum -7.758 -3.619 -10.419 13.485 Atomic orbital electron populations 1.22154 0.97010 1.00940 1.01666 1.21812 0.91528 0.99202 0.86152 0.89617 1.21199 0.85749 0.97131 0.94448 1.43850 0.99061 1.20800 1.68146 1.20842 0.94472 0.85058 0.97899 1.19107 0.94539 1.10661 1.14250 0.91522 1.25003 0.98906 0.99009 0.96295 1.70009 1.17220 1.45645 1.21982 0.86369 0.80355 0.80891 0.79105 1.21150 1.21746 1.20937 1.45556 1.66776 1.13199 1.09061 1.16937 0.77355 0.86154 0.81845 1.90767 1.50789 1.14969 1.84880 1.21527 1.16975 0.93250 0.95120 1.23033 0.95386 0.97250 0.88394 1.45821 1.52740 1.10957 1.07230 0.71053 1.77321 1.23734 0.91108 1.17252 1.20079 0.97165 0.89739 0.90361 1.18478 0.92773 0.89085 0.98457 1.21740 1.02586 0.94160 1.01063 1.21677 0.99219 0.98835 1.04579 1.24162 1.01493 0.87189 0.96421 1.84272 1.43352 1.21091 1.53707 0.93356 0.92237 0.92862 0.92360 0.94142 0.95084 0.93949 0.98856 0.93894 0.77721 0.79295 0.83311 0.83343 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.27 2.88 -67.93 -0.20 2.07 16 3 H 0.09 1.98 7.58 -51.93 -0.39 1.59 16 4 C 0.14 2.73 5.33 -4.04 -0.02 2.71 16 5 N -0.60 -14.10 2.78 -181.11 -0.50 -14.60 16 6 C 0.16 3.62 7.61 59.85 0.46 4.08 16 7 C -0.26 -6.91 9.66 -15.06 -0.15 -7.06 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -25.94 10.66 55.49 0.59 -25.35 16 11 Si 0.90 22.21 29.57 -169.99 -5.03 17.18 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 N -0.70 -12.75 4.40 -54.95 -0.24 -12.99 16 16 C 0.59 11.99 7.77 -12.62 -0.10 11.90 16 17 O -0.54 -12.60 14.26 -15.13 -0.22 -12.82 16 18 C -0.25 -4.47 6.32 -102.91 -0.65 -5.12 16 19 C 0.11 1.40 11.50 -16.64 -0.19 1.21 16 20 N -0.46 -5.36 7.20 30.81 0.22 -5.14 16 21 H 0.44 3.20 8.96 -182.85 -1.64 1.56 16 22 N -0.27 -4.16 12.67 34.49 0.44 -3.72 16 23 C 0.19 3.46 7.29 -80.69 -0.59 2.87 16 24 C 0.06 1.17 6.73 -36.53 -0.25 0.92 16 25 C -0.17 -2.72 10.85 -39.37 -0.43 -3.14 16 26 C -0.22 -3.02 10.89 -39.81 -0.43 -3.45 16 27 C -0.02 -0.31 12.08 29.50 0.36 0.04 16 28 O -0.13 -2.40 8.77 -15.81 -0.14 -2.54 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 33 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 34 H 0.03 0.73 6.90 -51.93 -0.36 0.38 16 35 H 0.04 1.05 7.30 -51.93 -0.38 0.67 16 36 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.39 6.27 6.12 -40.82 -0.25 6.02 16 39 H 0.19 1.74 7.48 -52.49 -0.39 1.34 16 40 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -35.83 357.98 -8.13 -43.96 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.73 Total: 5.57 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.92 Total: 5.05 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.51 Total: -61.81 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.35 Total: -15.36 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.83 -8.13 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.611 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds