Wall clock time and date at job start Tue Mar 31 2020 14:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47488 * 2 1 4 4 C 1.52999 * 109.46937 * 119.99831 * 2 1 3 5 5 N 1.46508 * 109.47174 * 175.00042 * 4 2 1 6 6 C 1.46503 * 119.99932 * 269.99797 * 5 4 2 7 7 C 1.36929 * 119.99929 * 89.99963 * 5 4 2 8 8 H 1.08003 * 120.00684 * 23.64602 * 7 5 4 9 9 C 1.38817 * 119.99799 * 203.64550 * 7 5 4 10 10 N 1.31614 * 120.00049 * 11.26767 * 9 7 5 11 11 Si 1.86798 * 119.99847 * 191.26975 * 9 7 5 12 12 H 1.48499 * 109.47656 * 59.99960 * 11 9 7 13 13 H 1.48506 * 109.47228 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47358 * 299.99584 * 11 9 7 15 15 N 1.46502 * 109.47140 * 239.99830 * 2 1 3 16 16 C 1.34771 * 120.00194 * 85.00575 * 15 2 1 17 17 O 1.21625 * 119.99786 * 359.97438 * 16 15 2 18 18 C 1.47217 * 120.00260 * 180.27896 * 16 15 2 19 19 C 1.37961 * 126.80990 * 359.74052 * 18 16 15 20 20 N 1.34146 * 107.93762 * 180.02562 * 19 18 16 21 21 H 0.96995 * 125.13551 * 180.02562 * 20 19 18 22 22 N 1.39769 * 109.72086 * 359.97438 * 20 19 18 23 23 C 1.31583 * 109.05167 * 359.70578 * 22 20 19 24 24 C 1.47656 * 126.54080 * 180.29164 * 23 22 20 25 25 C 1.36019 * 125.93894 * 325.18013 * 24 23 22 26 26 C 1.40900 * 106.74128 * 179.97438 * 25 24 23 27 27 C 1.34748 * 107.03825 * 0.02562 * 26 25 24 28 28 O 1.34305 * 108.68732 * 359.77168 * 27 26 25 29 29 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47221 * 300.00050 * 1 2 3 31 31 H 1.09004 * 109.46855 * 60.00511 * 1 2 3 32 32 H 1.08995 * 109.47474 * 294.99675 * 4 2 1 33 33 H 1.08996 * 109.47443 * 55.00002 * 4 2 1 34 34 H 1.09006 * 109.46693 * 94.57679 * 6 5 4 35 35 H 1.08998 * 109.47231 * 214.57865 * 6 5 4 36 36 H 1.09000 * 109.47320 * 334.58318 * 6 5 4 37 37 H 0.97001 * 120.00049 * 179.97438 * 10 9 7 38 38 H 0.97001 * 119.99532 * 264.99713 * 15 2 1 39 39 H 1.07997 * 126.03926 * 0.02562 * 19 18 16 40 40 H 1.08002 * 126.62958 * 359.97438 * 25 24 23 41 41 H 1.08001 * 126.48000 * 180.02562 * 26 25 24 42 42 H 1.08001 * 125.66378 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1258 -1.9920 0.5614 7 6 4.2798 0.1648 1.7241 8 1 3.8835 0.8068 2.4969 9 6 5.5797 0.3445 1.2715 10 7 5.9916 -0.2795 0.1883 11 14 6.7444 1.4720 2.1998 12 1 6.9137 0.9740 3.5885 13 1 8.0628 1.4927 1.5166 14 1 6.1825 2.8463 2.2318 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8575 1.1616 -2.4118 18 6 2.6320 -0.7139 -3.5606 19 6 2.9971 -2.0407 -3.6579 20 7 3.3793 -2.2724 -4.9227 21 1 3.6855 -3.1265 -5.2658 22 7 3.2684 -1.0975 -5.6716 23 6 2.8166 -0.1351 -4.8964 24 6 2.5502 1.2618 -5.2938 25 6 3.2620 1.9834 -6.2010 26 6 2.6615 3.2562 -6.2683 27 6 1.6244 3.2495 -5.4080 28 8 1.5572 2.0417 -4.8245 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 4.3539 -1.7640 -0.4799 35 1 5.0467 -2.2394 1.0894 36 1 3.4423 -2.8399 0.6062 37 1 6.8999 -0.1536 -0.1282 38 1 2.2490 -1.6318 -1.1525 39 1 2.9786 -2.7652 -2.8571 40 1 4.1213 1.6458 -6.7614 41 1 2.9735 4.0812 -6.8916 42 1 0.9559 4.0769 -5.2212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754333523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:35 Heat of formation + Delta-G solvation = 57.941087 kcal Electronic energy + Delta-G solvation = -27240.278429 eV Core-core repulsion = 23416.904969 eV Total energy + Delta-G solvation = -3823.373460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.40198 -42.06512 -40.18369 -37.87583 -35.64512 -34.17302 -33.30594 -33.20517 -32.27883 -30.56617 -29.81398 -27.91257 -27.34498 -24.69182 -24.09876 -23.27259 -22.57039 -21.78307 -20.99959 -20.72796 -19.44077 -18.69523 -18.14609 -17.46871 -16.94957 -16.93824 -16.54435 -16.05054 -15.88910 -15.60263 -15.32061 -15.03786 -14.79213 -14.60365 -14.30780 -13.74677 -13.70632 -13.58915 -13.35130 -13.31237 -13.03622 -12.78249 -12.62239 -12.53870 -12.26825 -12.18894 -12.01141 -11.79838 -11.63908 -11.26126 -10.81240 -10.75108 -10.58384 -10.03687 -9.69948 -9.18963 -8.65309 -7.78742 -5.23346 0.13152 0.54322 1.24116 1.44458 1.46059 1.46441 1.51172 1.79760 2.24998 2.44009 2.53883 2.68530 3.35669 3.42303 3.58226 3.78734 4.06790 4.10011 4.17098 4.24482 4.34432 4.39025 4.51499 4.62560 4.76159 4.83561 4.90720 4.93823 4.98303 5.01763 5.07083 5.18181 5.30084 5.43540 5.46076 5.57715 5.69479 5.82723 5.88037 6.04268 6.25572 6.36181 6.38815 6.86690 7.23199 7.56474 7.96215 8.35284 9.22806 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.004469 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.770245 B = 6263.955147 C = 6570.480217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.032 0.968 4 C 0.144 3.856 5 N -0.611 5.611 6 C 0.172 3.828 7 C -0.258 4.258 8 H 0.064 0.936 9 C -0.047 4.047 10 N -0.926 5.926 11 Si 0.954 3.046 12 H -0.275 1.275 13 H -0.298 1.298 14 H -0.287 1.287 15 N -0.689 5.689 16 C 0.583 3.417 17 O -0.582 6.582 18 C -0.303 4.303 19 C 0.143 3.857 20 N -0.436 5.436 21 H 0.466 0.534 22 N -0.280 5.280 23 C 0.172 3.828 24 C 0.024 3.976 25 C -0.179 4.179 26 C -0.223 4.223 27 C -0.030 4.030 28 O -0.163 6.163 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.041 0.959 37 H 0.242 0.758 38 H 0.402 0.598 39 H 0.233 0.767 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -5.649 -10.261 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 H 0.050 0.950 4 C 0.017 3.983 5 N -0.333 5.333 6 C 0.028 3.972 7 C -0.389 4.389 8 H 0.082 0.918 9 C -0.243 4.243 10 N -0.572 5.572 11 Si 0.784 3.216 12 H -0.201 1.201 13 H -0.225 1.225 14 H -0.213 1.213 15 N -0.339 5.339 16 C 0.371 3.629 17 O -0.463 6.463 18 C -0.318 4.318 19 C -0.009 4.009 20 N -0.145 5.145 21 H 0.316 0.684 22 N -0.105 5.105 23 C 0.005 3.995 24 C -0.028 4.028 25 C -0.200 4.200 26 C -0.241 4.241 27 C -0.099 4.099 28 O -0.056 6.056 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.237 0.763 39 H 0.249 0.751 40 H 0.177 0.823 41 H 0.200 0.800 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -9.727 -5.282 -11.264 15.792 hybrid contribution 1.331 0.485 0.918 1.688 sum -8.396 -4.797 -10.346 14.161 Atomic orbital electron populations 1.22010 0.93899 1.02811 1.01615 1.21619 0.93837 0.96335 0.86334 0.94957 1.21368 0.83242 0.99339 0.94374 1.44073 1.00827 1.20466 1.67967 1.20673 0.94292 0.86085 0.96185 1.19394 0.94980 1.10712 1.13781 0.91817 1.25618 1.00453 1.00859 0.97375 1.70158 1.16749 1.47137 1.23193 0.85546 0.78361 0.79236 0.78497 1.20050 1.22454 1.21319 1.45463 1.66407 1.13612 1.08376 1.17391 0.76754 0.85874 0.82925 1.90724 1.52914 1.16995 1.85708 1.21475 1.20576 0.95349 0.94380 1.23512 0.92031 0.96069 0.89256 1.45873 1.50912 1.11001 1.06703 0.68408 1.77253 1.23844 0.91720 1.17638 1.20325 0.97947 0.90323 0.90918 1.18915 0.93925 0.89964 0.99994 1.22075 1.02568 0.94945 1.00427 1.22081 0.98551 0.98874 1.04610 1.25044 1.02249 0.86828 0.95791 1.84245 1.44033 1.22519 1.54819 0.90389 0.90666 0.94582 0.92053 0.90190 0.96691 0.97243 0.94023 0.94901 0.76271 0.75132 0.82264 0.79977 0.74513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.48 71.98 0.68 -3.48 16 2 C 0.13 4.68 2.88 44.99 0.13 4.81 16 3 H 0.03 1.54 7.58 -2.39 -0.02 1.53 16 4 C 0.14 5.16 5.33 86.38 0.46 5.62 16 5 N -0.61 -28.17 2.78 -726.92 -2.02 -30.19 16 6 C 0.17 7.40 7.61 127.77 0.97 8.37 16 7 C -0.26 -13.93 9.66 84.04 0.81 -13.12 16 8 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 9 C -0.05 -2.66 5.13 84.86 0.44 -2.23 16 10 N -0.93 -53.93 10.66 21.65 0.23 -53.70 16 11 Si 0.95 46.25 29.57 68.60 2.03 48.28 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 14 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 15 N -0.69 -24.71 4.40 -446.02 -1.96 -26.68 16 16 C 0.58 24.19 7.77 86.60 0.67 24.87 16 17 O -0.58 -28.84 14.26 15.38 0.22 -28.62 16 18 C -0.30 -10.70 6.32 -18.76 -0.12 -10.82 16 19 C 0.14 3.38 11.50 84.27 0.97 4.34 16 20 N -0.44 -9.22 7.20 -56.44 -0.41 -9.63 16 21 H 0.47 5.30 8.96 -213.54 -1.91 3.38 16 22 N -0.28 -8.50 12.67 -44.78 -0.57 -9.07 16 23 C 0.17 6.26 7.29 43.90 0.32 6.58 16 24 C 0.02 0.90 6.73 24.24 0.16 1.07 16 25 C -0.18 -5.68 10.85 22.41 0.24 -5.44 16 26 C -0.22 -5.87 10.89 22.12 0.24 -5.63 16 27 C -0.03 -0.84 12.08 67.02 0.81 -0.04 16 28 O -0.16 -6.19 8.77 12.98 0.11 -6.07 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 33 H 0.08 2.28 7.86 -2.39 -0.02 2.27 16 34 H 0.01 0.69 6.90 -2.38 -0.02 0.67 16 35 H 0.01 0.44 7.30 -2.39 -0.02 0.42 16 36 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 37 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.40 11.97 6.12 -92.71 -0.57 11.41 16 39 H 0.23 3.29 7.48 -2.91 -0.02 3.26 16 40 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 41 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.24 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -82.78 357.98 3.01 -79.77 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -1.41 Total: 20.98 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.79 Total: 14.93 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -4.73 Total: -129.26 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: 0.33 Total: -34.69 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -82.78 3.01 -79.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.709 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds