Wall clock time and date at job start Tue Mar 31 2020 14:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47044 * 2 1 4 4 C 1.53000 * 109.47292 * 240.00018 * 2 1 3 5 5 N 1.46499 * 109.47315 * 184.99882 * 4 2 1 6 6 C 1.34769 * 119.99838 * 179.97438 * 5 4 2 7 7 O 1.21563 * 120.00651 * 0.02562 * 6 5 4 8 8 C 1.47753 * 119.99941 * 180.02562 * 6 5 4 9 9 C 1.41109 * 126.30620 * 180.02562 * 8 6 5 10 10 C 1.37005 * 105.42133 * 180.02562 * 9 8 6 11 11 C 1.47330 * 126.63331 * 179.97438 * 10 9 8 12 12 C 1.36142 * 125.95086 * 179.97438 * 11 10 9 13 13 C 1.40870 * 106.73141 * 179.97438 * 12 11 10 14 14 C 1.34758 * 107.05801 * 0.02562 * 13 12 11 15 15 O 1.34329 * 108.70767 * 359.73109 * 14 13 12 16 16 N 1.36542 * 106.72852 * 359.97438 * 10 9 8 17 17 H 0.97001 * 125.02553 * 180.02562 * 16 10 9 18 18 N 1.28440 * 109.94881 * 359.72978 * 16 10 9 19 19 N 1.46502 * 109.47020 * 119.99829 * 2 1 3 20 20 C 1.46503 * 119.99894 * 60.00268 * 19 2 1 21 21 C 1.36942 * 119.99784 * 240.00046 * 19 2 1 22 22 H 1.07998 * 119.99964 * 21.94795 * 21 19 2 23 23 C 1.38813 * 119.99430 * 201.94288 * 21 19 2 24 24 N 1.31612 * 120.00436 * 12.69316 * 23 21 19 25 25 Si 1.86807 * 119.99685 * 192.68570 * 23 21 19 26 26 H 1.48499 * 109.46583 * 60.00338 * 25 23 21 27 27 H 1.48498 * 109.47070 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46942 * 300.00541 * 25 23 21 29 29 H 1.09003 * 109.47050 * 300.00060 * 1 2 3 30 30 H 1.08996 * 109.47214 * 60.00106 * 1 2 3 31 31 H 1.08999 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46854 * 64.99662 * 4 2 1 33 33 H 1.09000 * 109.46740 * 305.00241 * 4 2 1 34 34 H 0.97004 * 119.99415 * 0.02562 * 5 4 2 35 35 H 1.07999 * 127.28565 * 359.97438 * 9 8 6 36 36 H 1.08008 * 126.63681 * 0.02562 * 12 11 10 37 37 H 1.08005 * 126.47146 * 179.97438 * 13 12 11 38 38 H 1.08003 * 125.64729 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47033 * 94.31210 * 20 19 2 40 40 H 1.09005 * 109.46762 * 214.31334 * 20 19 2 41 41 H 1.08991 * 109.47167 * 334.30792 * 20 19 2 42 42 H 0.97001 * 120.00481 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1907 7 8 3.5686 -1.8852 -3.1417 8 6 5.6455 -1.5356 -2.1313 9 6 6.4795 -2.1354 -3.0987 10 6 7.7545 -1.9964 -2.6170 11 6 8.9940 -2.4621 -3.2632 12 6 10.2552 -2.3160 -2.7717 13 6 11.1264 -2.9047 -3.7091 14 6 10.3643 -3.3756 -4.7158 15 8 9.0762 -3.1116 -4.4408 16 7 7.6543 -1.3430 -1.4223 17 1 8.4029 -1.1064 -0.8526 18 7 6.4227 -1.0824 -1.1673 19 7 2.0183 -0.6906 1.1962 20 6 1.6644 -2.0932 1.4280 21 6 2.8056 -0.0250 2.0976 22 1 2.7847 1.0540 2.1396 23 6 3.6305 -0.7373 2.9574 24 7 3.8496 -2.0181 2.7487 25 14 4.4297 0.1224 4.4106 26 1 3.3762 0.6746 5.2995 27 1 5.2568 -0.8511 5.1678 28 1 5.2919 1.2271 3.9192 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1583 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 3.9824 -0.4627 -0.4315 35 1 6.1767 -2.6052 -4.0228 36 1 10.5338 -1.8414 -1.8423 37 1 12.2022 -2.9662 -3.6354 38 1 10.7284 -3.8854 -5.5955 39 1 2.4539 -2.7362 1.0390 40 1 1.5487 -2.2666 2.4980 41 1 0.7274 -2.3202 0.9198 42 1 4.4262 -2.5158 3.3493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755317438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:18 Heat of formation + Delta-G solvation = 59.620535 kcal Electronic energy + Delta-G solvation = -26242.000219 eV Core-core repulsion = 22418.699585 eV Total energy + Delta-G solvation = -3823.300634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.92155 -43.26646 -40.44182 -38.34139 -35.38394 -34.32298 -33.82385 -33.08616 -32.91329 -31.05622 -29.35069 -27.97324 -27.51013 -25.12681 -24.49227 -23.64855 -22.74962 -21.68910 -21.14516 -20.60259 -19.82473 -18.81063 -18.19028 -17.52565 -17.35928 -17.06923 -16.83370 -16.63211 -16.03137 -15.70712 -15.43474 -15.08024 -14.95383 -14.60708 -14.35264 -13.87490 -13.82828 -13.66688 -13.58433 -13.37122 -13.18290 -12.78938 -12.56292 -12.49543 -12.26251 -12.14665 -12.09143 -11.70804 -11.45724 -11.34704 -11.25597 -10.80968 -10.60665 -10.55910 -9.91711 -9.08959 -8.73368 -7.73285 -5.20925 -0.08170 0.49787 1.25184 1.31346 1.50078 1.52330 1.57550 1.80845 2.08807 2.33240 2.45938 2.56169 3.29948 3.39798 3.40692 3.69109 3.91501 3.99541 4.08567 4.19611 4.24221 4.43439 4.47267 4.64405 4.73733 4.80739 4.85503 4.87788 4.90089 5.00709 5.10292 5.12414 5.30343 5.33810 5.46703 5.49700 5.61285 5.72238 5.78485 5.82275 6.04955 6.38895 6.49993 6.76919 7.19441 7.22629 7.94201 8.39327 9.28237 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.003512 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.538027 B = 7971.005855 C = 9533.778115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.155 3.845 3 H 0.073 0.927 4 C 0.110 3.890 5 N -0.688 5.688 6 C 0.593 3.407 7 O -0.576 6.576 8 C -0.027 4.027 9 C -0.166 4.166 10 C 0.090 3.910 11 C 0.019 3.981 12 C -0.180 4.180 13 C -0.220 4.220 14 C -0.018 4.018 15 O -0.181 6.181 16 N -0.349 5.349 17 H 0.463 0.537 18 N -0.242 5.242 19 N -0.602 5.602 20 C 0.183 3.817 21 C -0.261 4.261 22 H 0.072 0.928 23 C -0.041 4.041 24 N -0.927 5.927 25 Si 0.960 3.040 26 H -0.284 1.284 27 H -0.301 1.301 28 H -0.275 1.275 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.414 0.586 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.248 0.752 39 H -0.004 1.004 40 H 0.015 0.985 41 H 0.025 0.975 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.042 0.586 -12.875 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.016 4.016 5 N -0.336 5.336 6 C 0.378 3.622 7 O -0.456 6.456 8 C -0.186 4.186 9 C -0.194 4.194 10 C -0.035 4.035 11 C -0.033 4.033 12 C -0.201 4.201 13 C -0.238 4.238 14 C -0.086 4.086 15 O -0.076 6.076 16 N -0.068 5.068 17 H 0.312 0.688 18 N -0.079 5.079 19 N -0.326 5.326 20 C 0.037 3.963 21 C -0.391 4.391 22 H 0.090 0.910 23 C -0.237 4.237 24 N -0.574 5.574 25 Si 0.789 3.211 26 H -0.211 1.211 27 H -0.228 1.228 28 H -0.201 1.201 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.251 0.749 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.199 0.801 38 H 0.264 0.736 39 H 0.014 0.986 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.311 0.659 -12.586 17.619 hybrid contribution 1.187 -0.140 1.087 1.615 sum 13.498 0.519 -11.499 17.740 Atomic orbital electron populations 1.22049 0.94702 1.01772 1.02144 1.20866 0.94491 0.95520 0.84313 0.90913 1.22021 0.79012 1.00693 0.99842 1.45813 1.08679 1.56746 1.22390 1.17115 0.84657 0.77964 0.82507 1.90695 1.69144 1.50744 1.35042 1.21796 0.94475 1.07015 0.95272 1.21893 0.89938 1.05520 1.02016 1.18334 0.92062 1.03522 0.89632 1.18728 0.91625 1.04473 0.88442 1.22218 0.90480 1.04494 1.02885 1.22143 1.02429 1.04339 0.94901 1.25170 0.78410 1.02372 1.02618 1.84095 1.31103 1.58968 1.33479 1.43453 1.06529 1.41075 1.15778 0.68815 1.73707 0.90537 1.20089 1.23582 1.44077 1.57686 1.09352 1.21439 1.20408 0.93995 0.84689 0.97160 1.19451 1.16333 0.91253 1.12062 0.90986 1.25593 0.98944 0.96609 1.02525 1.70255 1.40327 1.08553 1.38229 0.85466 0.78058 0.77392 0.80175 1.21088 1.22794 1.20118 0.92691 0.90273 0.93197 0.90478 0.93473 0.74926 0.81212 0.81195 0.80077 0.73599 0.98570 0.96584 0.95681 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.18 71.98 0.66 -3.95 16 2 C 0.16 5.92 2.87 44.99 0.13 6.05 16 3 H 0.07 2.72 7.86 -2.39 -0.02 2.70 16 4 C 0.11 4.20 4.97 86.38 0.43 4.63 16 5 N -0.69 -28.93 5.39 -466.08 -2.51 -31.44 16 6 C 0.59 25.21 7.83 86.76 0.68 25.89 16 7 O -0.58 -26.29 16.91 -3.91 -0.07 -26.36 16 8 C -0.03 -1.03 7.11 42.36 0.30 -0.73 16 9 C -0.17 -5.47 10.76 22.68 0.24 -5.23 16 10 C 0.09 2.46 7.10 40.51 0.29 2.75 16 11 C 0.02 0.42 7.17 24.18 0.17 0.59 16 12 C -0.18 -3.00 10.84 22.43 0.24 -2.76 16 13 C -0.22 -2.78 10.88 22.12 0.24 -2.54 16 14 C -0.02 -0.23 12.08 67.02 0.81 0.58 16 15 O -0.18 -3.87 10.68 -7.08 -0.08 -3.95 16 16 N -0.35 -9.42 6.90 -48.73 -0.34 -9.76 16 17 H 0.46 8.68 8.96 -220.01 -1.97 6.71 16 18 N -0.24 -8.69 11.88 -48.37 -0.57 -9.27 16 19 N -0.60 -28.46 2.29 -702.77 -1.61 -30.07 16 20 C 0.18 9.02 8.11 127.77 1.04 10.06 16 21 C -0.26 -13.49 9.33 84.03 0.78 -12.71 16 22 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 23 C -0.04 -2.19 5.10 84.86 0.43 -1.76 16 24 N -0.93 -53.33 10.63 21.65 0.23 -53.10 16 25 Si 0.96 43.93 29.57 68.60 2.03 45.96 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.58 6.66 -2.39 -0.02 1.57 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 34 H 0.41 18.80 7.61 -92.71 -0.71 18.09 16 35 H 0.17 5.29 8.06 -2.91 -0.02 5.26 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.25 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 40 H 0.02 0.84 7.20 -2.38 -0.02 0.82 16 41 H 0.02 1.08 6.43 -2.39 -0.02 1.06 16 42 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -71.17 361.66 1.93 -69.24 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -1.61 Total: 27.87 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.45 Total: 20.88 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -4.80 Total: -133.64 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.14 Total: -30.30 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.17 1.93 -69.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755317438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.858 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds