Wall clock time and date at job start Tue Mar 31 2020 14:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47843 * 2 1 4 4 C 1.53001 * 109.47136 * 239.99849 * 2 1 3 5 5 N 1.46501 * 109.47488 * 185.00529 * 4 2 1 6 6 C 1.46495 * 120.00231 * 89.99733 * 5 4 2 7 7 C 1.34778 * 119.99425 * 270.00053 * 5 4 2 8 8 O 1.21624 * 120.00215 * 6.52774 * 7 5 4 9 9 C 1.47218 * 119.99956 * 186.52551 * 7 5 4 10 10 C 1.37966 * 126.81231 * 7.81350 * 9 7 5 11 11 N 1.34136 * 107.93965 * 179.89500 * 10 9 7 12 12 H 0.96998 * 125.13693 * 180.11090 * 11 10 9 13 13 N 1.39764 * 109.72503 * 0.38201 * 11 10 9 14 14 C 1.31591 * 109.04929 * 359.76213 * 13 11 10 15 15 C 1.47665 * 126.53939 * 179.97438 * 14 13 11 16 16 C 1.36017 * 125.93908 * 325.04677 * 15 14 13 17 17 C 1.40907 * 106.73428 * 180.02562 * 16 15 14 18 18 C 1.34756 * 107.04110 * 0.02562 * 17 16 15 19 19 O 1.34302 * 108.67966 * 359.73440 * 18 17 16 20 20 N 1.46504 * 109.47098 * 120.00198 * 2 1 3 21 21 C 1.36939 * 119.99957 * 274.99971 * 20 2 1 22 22 H 1.08000 * 119.99603 * 359.97438 * 21 20 2 23 23 C 1.38811 * 119.99822 * 180.02562 * 21 20 2 24 24 N 1.31615 * 120.00472 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99506 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47631 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46973 * 119.99798 * 25 23 21 28 28 H 1.48500 * 109.47150 * 239.99372 * 25 23 21 29 29 H 1.09006 * 109.46999 * 59.99792 * 1 2 3 30 30 H 1.08995 * 109.47843 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47137 * 300.00290 * 1 2 3 32 32 H 1.09007 * 109.46848 * 305.00246 * 4 2 1 33 33 H 1.09002 * 109.47316 * 65.00127 * 4 2 1 34 34 H 1.08996 * 109.47127 * 95.95293 * 6 5 4 35 35 H 1.09003 * 109.46993 * 215.94764 * 6 5 4 36 36 H 1.08996 * 109.46944 * 335.95216 * 6 5 4 37 37 H 1.08005 * 126.03168 * 0.02562 * 10 9 7 38 38 H 1.07998 * 126.63032 * 359.97438 * 16 15 14 39 39 H 1.07999 * 126.47409 * 180.02562 * 17 16 15 40 40 H 1.07996 * 125.65434 * 180.02562 * 18 17 16 41 41 H 0.97003 * 120.00029 * 94.99740 * 20 2 1 42 42 H 0.96994 * 120.00319 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8266 -1.1906 6 6 4.1257 -1.9921 -0.5612 7 6 4.2675 0.1490 -1.7156 8 8 3.7535 1.1701 -2.1308 9 6 5.7281 -0.0213 -1.7865 10 6 6.4416 -1.1669 -1.5004 11 7 7.7425 -0.9020 -1.6918 12 1 8.4660 -1.5352 -1.5634 13 7 7.8987 0.4261 -2.0982 14 6 6.7145 0.9956 -2.1692 15 6 6.4322 2.3916 -2.5591 16 6 7.2124 3.4709 -2.2827 17 6 6.5651 4.5924 -2.8385 18 6 5.4338 4.1474 -3.4199 19 8 5.3595 2.8168 -3.2540 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0076 2.3758 22 1 1.8926 1.0404 2.4241 23 6 2.6123 -0.6619 3.5090 24 7 2.9253 -1.9389 3.4499 25 14 2.7913 0.2702 5.1179 26 1 2.3774 1.6826 4.9206 27 1 1.9310 -0.3582 6.1524 28 1 4.2084 0.2273 5.5598 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6052 -1.7199 -1.2951 33 1 1.7516 -0.1584 -2.1370 34 1 4.3784 -2.7262 -1.3262 35 1 5.0324 -1.6816 -0.0420 36 1 3.4318 -2.4356 0.1529 37 1 6.0259 -2.1112 -1.1810 38 1 8.1467 3.4689 -1.7411 39 1 6.9105 5.6151 -2.8047 40 1 4.7097 4.7588 -3.9379 41 1 2.2489 -1.6319 1.1526 42 1 3.2486 -2.3961 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755618516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:15 Heat of formation + Delta-G solvation = 69.362739 kcal Electronic energy + Delta-G solvation = -27141.135569 eV Core-core repulsion = 23318.257389 eV Total energy + Delta-G solvation = -3822.878180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.40393 -42.20606 -40.34258 -37.75724 -35.85842 -34.18936 -34.00422 -33.30427 -31.68754 -30.49254 -29.86743 -28.18908 -27.09913 -25.65631 -24.10950 -23.41998 -22.51130 -21.88143 -20.98528 -20.55784 -19.28961 -18.64050 -18.12958 -17.52912 -16.97417 -16.89240 -16.61158 -16.38834 -15.90999 -15.64137 -15.54741 -15.08321 -14.82463 -14.58877 -13.86437 -13.77222 -13.73746 -13.70905 -13.58851 -13.39165 -13.09570 -12.86772 -12.81336 -12.59087 -12.47524 -12.15768 -12.09859 -11.81668 -11.57150 -11.26859 -11.00205 -10.82092 -10.74990 -9.97329 -9.48067 -9.18924 -8.89916 -7.91381 -5.14944 0.12044 0.49685 1.22493 1.43973 1.44903 1.46369 1.54283 1.79027 2.10178 2.29802 2.53918 2.58348 3.39661 3.42846 3.51468 3.87186 3.98570 4.09287 4.12811 4.16769 4.21032 4.29300 4.35114 4.47328 4.61735 4.70644 4.74582 4.79982 4.93161 4.94426 4.99755 5.02644 5.17980 5.19441 5.31248 5.45089 5.55141 5.57884 5.77790 6.03551 6.24458 6.32521 6.35193 6.57532 7.36348 7.40800 8.13718 8.44169 9.31328 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.004212 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.797698 B = 6645.383444 C = 6753.372133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.016 0.984 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.068 3.932 7 C 0.579 3.421 8 O -0.572 6.572 9 C -0.304 4.304 10 C 0.125 3.875 11 N -0.439 5.439 12 H 0.466 0.534 13 N -0.282 5.282 14 C 0.175 3.825 15 C 0.021 3.979 16 C -0.177 4.177 17 C -0.224 4.224 18 C -0.028 4.028 19 O -0.160 6.160 20 N -0.721 5.721 21 C -0.230 4.230 22 H 0.054 0.946 23 C -0.061 4.061 24 N -0.956 5.956 25 Si 0.954 3.046 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.294 1.294 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.239 0.761 41 H 0.380 0.620 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 0.540 -14.926 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.034 0.966 4 C -0.001 4.001 5 N -0.326 5.326 6 C -0.074 4.074 7 C 0.369 3.631 8 O -0.452 6.452 9 C -0.319 4.319 10 C -0.026 4.026 11 N -0.148 5.148 12 H 0.316 0.684 13 N -0.106 5.106 14 C 0.007 3.993 15 C -0.031 4.031 16 C -0.198 4.198 17 C -0.243 4.243 18 C -0.097 4.097 19 O -0.053 6.053 20 N -0.365 5.365 21 C -0.363 4.363 22 H 0.072 0.928 23 C -0.254 4.254 24 N -0.607 5.607 25 Si 0.785 3.215 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.222 1.222 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.260 0.740 38 H 0.177 0.823 39 H 0.199 0.801 40 H 0.255 0.745 41 H 0.215 0.785 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.203 1.132 -15.285 17.878 hybrid contribution -0.329 0.011 1.656 1.689 sum 8.874 1.144 -13.628 16.303 Atomic orbital electron populations 1.22205 0.96886 1.01552 1.00534 1.20777 0.93197 0.94718 0.87105 0.96557 1.21731 0.78990 1.01942 0.97438 1.47430 1.06435 1.21730 1.56994 1.22438 0.99668 0.87360 0.97959 1.17449 0.85586 0.82686 0.77364 1.90742 1.74896 1.28433 1.51158 1.21400 0.93937 0.95385 1.21176 1.24584 0.84012 1.00648 0.93308 1.46010 1.07984 1.09108 1.51663 0.68438 1.77263 1.19130 0.91880 1.22308 1.20323 0.90353 0.90650 0.97948 1.18902 0.89439 0.91155 1.03632 1.22081 1.01812 0.91419 1.04478 1.22090 0.96794 1.01046 1.04333 1.25062 1.00992 0.80415 1.03231 1.84275 1.39493 1.24537 1.57011 1.42472 1.78385 1.10242 1.05355 1.19428 1.34615 0.93473 0.88751 0.92760 1.25181 1.03226 0.96862 1.00124 1.69716 1.52754 1.09240 1.29000 0.85358 0.76825 0.77977 0.81334 1.20610 1.21799 1.22154 0.91568 0.92359 0.94817 0.88314 0.89850 0.88427 0.90960 0.90982 0.74030 0.82274 0.80084 0.74481 0.78507 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 9.49 71.98 0.68 -4.74 16 2 C 0.15 6.23 3.20 44.99 0.14 6.38 16 3 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 4 C 0.12 4.07 4.97 86.38 0.43 4.50 16 5 N -0.60 -19.82 2.73 -850.91 -2.32 -22.15 16 6 C 0.07 1.81 8.18 127.77 1.05 2.86 16 7 C 0.58 21.94 7.64 86.60 0.66 22.60 16 8 O -0.57 -25.41 14.18 15.89 0.23 -25.19 16 9 C -0.30 -9.90 6.12 -18.76 -0.11 -10.01 16 10 C 0.13 2.72 9.90 84.28 0.83 3.55 16 11 N -0.44 -8.55 7.20 -56.43 -0.41 -8.95 16 12 H 0.47 4.64 8.96 -213.54 -1.91 2.73 16 13 N -0.28 -8.00 12.67 -44.77 -0.57 -8.56 16 14 C 0.17 5.92 7.29 43.90 0.32 6.24 16 15 C 0.02 0.73 6.80 24.25 0.16 0.89 16 16 C -0.18 -5.19 10.85 22.41 0.24 -4.94 16 17 C -0.22 -5.42 10.89 22.12 0.24 -5.18 16 18 C -0.03 -0.72 12.08 67.02 0.81 0.09 16 19 O -0.16 -5.65 8.63 13.59 0.12 -5.53 16 20 N -0.72 -34.80 4.57 -322.95 -1.47 -36.28 16 21 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 22 H 0.05 3.11 7.83 -2.91 -0.02 3.09 16 23 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 24 N -0.96 -54.49 13.06 21.65 0.28 -54.21 16 25 Si 0.95 46.33 29.55 68.60 2.03 48.36 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 29 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.10 2.74 8.07 -2.38 -0.02 2.72 16 33 H 0.08 2.73 7.52 -2.39 -0.02 2.71 16 34 H 0.10 1.60 7.29 -2.39 -0.02 1.59 16 35 H 0.07 1.95 5.46 -2.39 -0.01 1.93 16 36 H 0.07 2.28 5.78 -2.39 -0.01 2.27 16 37 H 0.24 3.31 4.49 -2.91 -0.01 3.30 16 38 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.24 3.89 8.06 -2.91 -0.02 3.86 16 41 H 0.38 18.32 5.41 -92.71 -0.50 17.81 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -79.84 352.56 3.31 -76.53 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -1.33 Total: 28.67 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.76 Total: 7.31 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -4.49 Total: -130.15 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: 0.34 Total: -30.72 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.84 3.31 -76.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755618516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.890 kcal (2) G-P(sol) polarization free energy of solvation -79.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds