Wall clock time and date at job start Tue Mar 31 2020 12:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 111.06570 * 2 1 4 4 C 1.55461 * 111.18027 * 124.36032 * 2 1 3 5 5 H 1.08994 * 113.88694 * 311.32008 * 4 2 1 6 6 C 1.54829 * 103.15273 * 74.32175 * 4 2 1 7 7 C 1.54031 * 105.98995 * 27.21741 * 6 4 2 8 8 C 1.54828 * 105.99428 * 359.97438 * 7 6 4 9 9 C 1.52992 * 113.12790 * 210.15584 * 8 7 6 10 10 C 1.51782 * 107.08504 * 84.18338 * 8 7 6 11 11 O 1.21229 * 120.19424 * 105.97912 * 10 8 7 12 12 N 1.34590 * 119.59215 * 286.18915 * 10 8 7 13 13 C 1.46493 * 118.90161 * 182.17016 * 12 10 8 14 14 C 1.52998 * 109.47217 * 269.73012 * 13 12 10 15 15 H 1.08998 * 109.47104 * 55.00421 * 14 13 12 16 16 C 1.47203 * 109.47211 * 294.99937 * 14 13 12 17 17 N 5.71024 * 140.85683 * 141.80903 * 2 1 3 18 18 C 1.53002 * 109.46886 * 174.99768 * 14 13 12 19 19 C 1.50706 * 109.47153 * 184.99546 * 18 14 13 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 14 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 C 1.34588 * 122.19457 * 1.89296 * 12 10 8 28 28 O 1.21223 * 120.21031 * 177.91014 * 27 12 10 29 29 H 1.09004 * 109.46934 * 297.08675 * 1 2 3 30 30 H 1.08997 * 109.47240 * 57.09089 * 1 2 3 31 31 H 1.09004 * 109.46872 * 177.09387 * 1 2 3 32 32 H 1.09004 * 109.47385 * 182.90877 * 3 2 1 33 33 H 1.09003 * 109.47190 * 302.90728 * 3 2 1 34 34 H 1.08998 * 109.47600 * 62.90711 * 3 2 1 35 35 H 1.08997 * 110.14838 * 146.34544 * 6 4 2 36 36 H 1.08997 * 110.14573 * 268.02193 * 6 4 2 37 37 H 1.08988 * 110.14602 * 119.13631 * 7 6 4 38 38 H 1.09007 * 110.14189 * 240.80467 * 7 6 4 39 39 H 1.09005 * 109.47379 * 58.55010 * 9 8 7 40 40 H 1.09001 * 109.47037 * 178.54428 * 9 8 7 41 41 H 1.08996 * 109.47452 * 298.54874 * 9 8 7 42 42 H 1.09001 * 109.47299 * 149.72904 * 13 12 10 43 43 H 1.09002 * 109.47069 * 29.73072 * 13 12 10 44 44 H 1.09004 * 109.47178 * 65.00336 * 18 14 13 45 45 H 1.08993 * 109.47411 * 305.00018 * 18 14 13 46 46 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0799 1.4277 0.0000 4 6 2.0917 -0.8181 1.1966 5 1 1.6376 -0.5667 2.1551 6 6 1.8390 -2.2849 0.7701 7 6 1.8390 -2.2849 -0.7702 8 6 2.0910 -0.8180 -1.1968 9 6 1.4354 -0.4593 -2.5318 10 6 3.5929 -0.5999 -1.1783 11 8 4.2115 -0.5285 -2.2185 12 7 4.2342 -0.4905 -0.0001 13 6 5.6762 -0.2324 -0.0001 14 6 6.4325 -1.5624 0.0001 15 1 6.0997 -2.1696 -0.8417 16 6 6.1652 -2.2786 1.2580 17 7 5.9587 -2.8331 2.2287 18 6 7.9338 -1.2953 -0.1258 19 6 8.6684 -2.6054 -0.2490 20 1 8.1193 -3.5354 -0.2390 21 6 10.0414 -2.6168 -0.3745 22 7 10.7095 -1.4841 -0.3920 23 14 10.9519 -4.2406 -0.5279 24 1 12.4085 -3.9813 -0.6560 25 1 10.7003 -5.0654 0.6812 26 1 10.4707 -4.9662 -1.7309 27 6 3.5939 -0.6051 1.1782 28 8 4.2133 -0.5380 2.2180 29 1 -0.3633 0.4680 0.9150 30 1 -0.3633 0.5583 -0.8627 31 1 -0.3633 -1.0264 -0.0521 32 1 3.1683 1.3979 -0.0522 33 1 1.6895 1.9675 -0.8628 34 1 1.7738 1.9351 0.9149 35 1 2.6354 -2.9275 1.1454 36 1 0.8741 -2.6245 1.1465 37 1 2.6352 -2.9275 -1.1456 38 1 0.8739 -2.6252 -1.1456 39 1 0.3601 -0.6249 -2.4647 40 1 1.6279 0.5888 -2.7611 41 1 1.8510 -1.0862 -3.3207 42 1 5.9433 0.3376 0.8897 43 1 5.9433 0.3374 -0.8902 44 1 8.2839 -0.7644 0.7595 45 1 8.1219 -0.6885 -1.0114 46 1 10.2367 -0.6409 -0.3126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027206616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:15 Heat of formation + Delta-G solvation = -55.840897 kcal Electronic energy + Delta-G solvation = -28707.299719 eV Core-core repulsion = 24982.532645 eV Total energy + Delta-G solvation = -3724.767074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.77043 -38.89009 -38.63907 -36.54971 -35.01582 -33.84959 -32.66659 -31.95678 -31.66966 -28.43555 -27.05650 -26.69289 -25.12156 -23.77765 -23.41203 -22.11982 -21.00407 -20.55571 -17.90312 -17.34656 -17.25936 -16.88909 -16.51100 -16.22043 -15.51635 -14.93947 -14.81315 -14.30898 -14.05127 -13.75905 -13.72590 -13.54407 -13.43157 -13.25964 -13.01996 -12.88732 -12.73388 -12.44353 -12.15735 -12.12464 -11.80079 -11.68871 -11.66541 -11.51408 -11.43585 -11.35356 -11.30595 -11.11537 -10.86723 -10.68776 -10.46975 -10.31496 -10.10578 -9.89197 -9.85289 -9.50314 -8.64748 -8.39034 -6.41722 -4.12645 1.56761 2.45709 2.71251 3.44198 3.46742 3.61063 3.63863 3.65694 3.66550 3.78668 3.96183 4.08267 4.51912 4.55543 4.67259 4.69051 4.71158 4.75479 4.85430 5.01991 5.06723 5.24794 5.27558 5.34311 5.37283 5.37956 5.40003 5.44344 5.46524 5.47408 5.51130 5.53887 5.58559 5.65000 5.73372 5.79316 5.82796 5.91785 5.96611 6.20572 6.31419 6.99465 7.08794 7.23545 7.43878 7.79803 8.03312 8.34645 8.45780 8.80372 9.58119 10.99175 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.003902 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.417636 B = 7174.941537 C = 7432.240524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.158 4.158 4 C -0.104 4.104 5 H 0.129 0.871 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.076 4.076 9 C -0.119 4.119 10 C 0.529 3.471 11 O -0.485 6.485 12 N -0.569 5.569 13 C 0.099 3.901 14 C 0.006 3.994 15 H 0.103 0.897 16 C 0.233 3.767 17 N -0.453 5.453 18 C 0.022 3.978 19 C -0.605 4.605 20 H 0.050 0.950 21 C 0.022 3.978 22 N -0.907 5.907 23 Si 1.066 2.934 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.286 1.286 27 C 0.521 3.479 28 O -0.480 6.480 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.019 0.981 45 H 0.032 0.968 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.390 5.222 -3.078 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.215 4.215 4 C -0.125 4.125 5 H 0.147 0.853 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.079 4.079 9 C -0.176 4.176 10 C 0.318 3.682 11 O -0.356 6.356 12 N -0.312 5.312 13 C -0.023 4.023 14 C -0.017 4.017 15 H 0.121 0.879 16 C -0.084 4.084 17 N -0.129 5.129 18 C -0.017 4.017 19 C -0.643 4.643 20 H 0.068 0.932 21 C -0.183 4.183 22 N -0.543 5.543 23 Si 0.894 3.106 24 H -0.206 1.206 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.309 3.691 28 O -0.350 6.350 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.037 0.963 45 H 0.050 0.950 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.517 3.783 -1.774 23.885 hybrid contribution -1.199 0.791 -0.078 1.438 sum -24.716 4.573 -1.852 25.203 Atomic orbital electron populations 1.21712 0.91939 1.02699 1.02611 1.21937 0.97320 0.94780 0.91789 1.22058 1.01649 0.94648 1.03190 1.23064 0.90591 0.97532 1.01285 0.85320 1.22317 1.03723 0.94220 0.95494 1.22395 1.03752 0.93854 0.95351 1.22275 0.90326 0.97324 0.98016 1.21446 1.00020 1.02658 0.93478 1.21087 0.90234 0.74151 0.82696 1.90744 1.68870 1.44595 1.31341 1.46913 1.11511 1.65266 1.07497 1.22049 0.76383 0.98179 1.05691 1.19316 1.00770 0.92867 0.88745 0.87883 1.28888 0.91805 0.93341 0.94387 1.81007 1.10354 1.10186 1.11385 1.19253 0.85873 0.98945 0.97620 1.21908 0.94422 0.92005 1.55957 0.93215 1.25787 0.94961 1.04044 0.93498 1.70801 1.39284 0.98302 1.45898 0.83574 0.76254 0.74118 0.76627 1.20602 1.21472 1.21245 1.21189 0.90581 0.74476 0.82804 1.90802 1.68871 1.43923 1.31394 0.91812 0.91521 0.91652 0.92064 0.91192 0.91315 0.90619 0.89305 0.90549 0.89229 0.90877 0.91622 0.90987 0.88325 0.87044 0.96269 0.94973 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 7.79 37.16 0.29 -0.38 16 2 C -0.06 -0.45 0.59 -151.91 -0.09 -0.54 16 3 C -0.16 -1.33 8.05 37.16 0.30 -1.03 16 4 C -0.10 -1.02 3.47 -88.99 -0.31 -1.33 16 5 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.12 -1.09 5.63 -25.23 -0.14 -1.23 16 7 C -0.12 -0.99 5.20 -25.23 -0.13 -1.12 16 8 C -0.08 -0.70 0.65 -152.87 -0.10 -0.80 16 9 C -0.12 -0.88 8.05 37.15 0.30 -0.58 16 10 C 0.53 7.09 5.06 -10.54 -0.05 7.03 16 11 O -0.48 -7.82 15.98 5.60 0.09 -7.73 16 12 N -0.57 -8.32 1.54 -114.60 -0.18 -8.50 16 13 C 0.10 1.66 4.61 -4.05 -0.02 1.64 16 14 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 15 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 16 C 0.23 5.25 11.67 -20.73 -0.24 5.01 16 17 N -0.45 -10.84 18.17 42.19 0.77 -10.07 16 18 C 0.02 0.53 3.74 -27.88 -0.10 0.42 16 19 C -0.60 -16.95 8.60 -34.44 -0.30 -17.25 16 20 H 0.05 1.40 7.59 -52.49 -0.40 1.01 16 21 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 22 N -0.91 -27.31 13.65 55.43 0.76 -26.56 16 23 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.52 7.51 4.67 -10.56 -0.05 7.46 16 28 O -0.48 -8.80 14.77 5.61 0.08 -8.71 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.28 7.28 -51.93 -0.38 -0.09 16 31 H 0.06 0.28 6.86 -51.93 -0.36 -0.07 16 32 H 0.06 0.66 5.27 -51.93 -0.27 0.39 16 33 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 36 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 37 H 0.08 0.78 7.87 -51.94 -0.41 0.37 16 38 H 0.09 0.53 7.84 -51.93 -0.41 0.12 16 39 H 0.07 0.36 6.97 -51.93 -0.36 0.00 16 40 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 41 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.10 1.67 7.38 -51.93 -0.38 1.29 16 43 H 0.11 1.75 7.37 -51.93 -0.38 1.37 16 44 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 45 H 0.03 0.78 8.00 -51.93 -0.42 0.36 16 46 H 0.27 7.96 7.22 -40.82 -0.29 7.66 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -34.76 361.18 -6.13 -40.88 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.04 Total: -3.04 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.97 Total: -2.29 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 1.35 Total: -45.12 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.17 Total: -16.45 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.76 -6.13 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027206616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.957 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds