Wall clock time and date at job start Tue Mar 31 2020 12:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 111.06570 * 2 1 4 4 C 1.55461 * 111.18027 * 124.36032 * 2 1 3 5 5 H 1.08994 * 113.88694 * 311.32008 * 4 2 1 6 6 C 1.54829 * 103.15273 * 74.32175 * 4 2 1 7 7 C 1.54031 * 105.98995 * 27.21741 * 6 4 2 8 8 C 1.54828 * 105.99428 * 359.97438 * 7 6 4 9 9 C 1.52992 * 113.12790 * 210.15584 * 8 7 6 10 10 C 1.51782 * 107.08504 * 84.18338 * 8 7 6 11 11 O 1.21229 * 120.19424 * 105.97912 * 10 8 7 12 12 N 1.34590 * 119.59215 * 286.18915 * 10 8 7 13 13 C 1.46493 * 118.90161 * 182.17016 * 12 10 8 14 14 C 1.52998 * 109.47217 * 269.73012 * 13 12 10 15 15 H 1.08998 * 109.47104 * 55.00421 * 14 13 12 16 16 C 1.47203 * 109.47211 * 294.99937 * 14 13 12 17 17 N 5.71024 * 140.85683 * 141.80903 * 2 1 3 18 18 C 1.53002 * 109.46886 * 174.99768 * 14 13 12 19 19 C 1.50706 * 109.47153 * 184.99546 * 18 14 13 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 14 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 C 1.34588 * 122.19457 * 1.89296 * 12 10 8 28 28 O 1.21223 * 120.21031 * 177.91014 * 27 12 10 29 29 H 1.09004 * 109.46934 * 297.08675 * 1 2 3 30 30 H 1.08997 * 109.47240 * 57.09089 * 1 2 3 31 31 H 1.09004 * 109.46872 * 177.09387 * 1 2 3 32 32 H 1.09004 * 109.47385 * 182.90877 * 3 2 1 33 33 H 1.09003 * 109.47190 * 302.90728 * 3 2 1 34 34 H 1.08998 * 109.47600 * 62.90711 * 3 2 1 35 35 H 1.08997 * 110.14838 * 146.34544 * 6 4 2 36 36 H 1.08997 * 110.14573 * 268.02193 * 6 4 2 37 37 H 1.08988 * 110.14602 * 119.13631 * 7 6 4 38 38 H 1.09007 * 110.14189 * 240.80467 * 7 6 4 39 39 H 1.09005 * 109.47379 * 58.55010 * 9 8 7 40 40 H 1.09001 * 109.47037 * 178.54428 * 9 8 7 41 41 H 1.08996 * 109.47452 * 298.54874 * 9 8 7 42 42 H 1.09001 * 109.47299 * 149.72904 * 13 12 10 43 43 H 1.09002 * 109.47069 * 29.73072 * 13 12 10 44 44 H 1.09004 * 109.47178 * 65.00336 * 18 14 13 45 45 H 1.08993 * 109.47411 * 305.00018 * 18 14 13 46 46 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0799 1.4277 0.0000 4 6 2.0917 -0.8181 1.1966 5 1 1.6376 -0.5667 2.1551 6 6 1.8390 -2.2849 0.7701 7 6 1.8390 -2.2849 -0.7702 8 6 2.0910 -0.8180 -1.1968 9 6 1.4354 -0.4593 -2.5318 10 6 3.5929 -0.5999 -1.1783 11 8 4.2115 -0.5285 -2.2185 12 7 4.2342 -0.4905 -0.0001 13 6 5.6762 -0.2324 -0.0001 14 6 6.4325 -1.5624 0.0001 15 1 6.0997 -2.1696 -0.8417 16 6 6.1652 -2.2786 1.2580 17 7 5.9587 -2.8331 2.2287 18 6 7.9338 -1.2953 -0.1258 19 6 8.6684 -2.6054 -0.2490 20 1 8.1193 -3.5354 -0.2390 21 6 10.0414 -2.6168 -0.3745 22 7 10.7095 -1.4841 -0.3920 23 14 10.9519 -4.2406 -0.5279 24 1 12.4085 -3.9813 -0.6560 25 1 10.7003 -5.0654 0.6812 26 1 10.4707 -4.9662 -1.7309 27 6 3.5939 -0.6051 1.1782 28 8 4.2133 -0.5380 2.2180 29 1 -0.3633 0.4680 0.9150 30 1 -0.3633 0.5583 -0.8627 31 1 -0.3633 -1.0264 -0.0521 32 1 3.1683 1.3979 -0.0522 33 1 1.6895 1.9675 -0.8628 34 1 1.7738 1.9351 0.9149 35 1 2.6354 -2.9275 1.1454 36 1 0.8741 -2.6245 1.1465 37 1 2.6352 -2.9275 -1.1456 38 1 0.8739 -2.6252 -1.1456 39 1 0.3601 -0.6249 -2.4647 40 1 1.6279 0.5888 -2.7611 41 1 1.8510 -1.0862 -3.3207 42 1 5.9433 0.3376 0.8897 43 1 5.9433 0.3374 -0.8902 44 1 8.2839 -0.7644 0.7595 45 1 8.1219 -0.6885 -1.0114 46 1 10.2367 -0.6409 -0.3126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027206616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:14 Heat of formation + Delta-G solvation = -76.638828 kcal Electronic energy + Delta-G solvation = -28708.201585 eV Core-core repulsion = 24982.532645 eV Total energy + Delta-G solvation = -3725.668940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74577 -40.04831 -39.70994 -38.21246 -36.47925 -35.81099 -33.67613 -33.29353 -32.54680 -29.55197 -27.98961 -27.66508 -26.32282 -25.10780 -24.54987 -24.08133 -21.81130 -21.48223 -19.43072 -18.79619 -18.31800 -18.07454 -17.98047 -17.55103 -16.44349 -15.97895 -15.82467 -15.72973 -15.54905 -15.22946 -15.15029 -14.67379 -14.53593 -14.30120 -14.19973 -13.97327 -13.60053 -13.51641 -13.44239 -13.36857 -13.33080 -13.03270 -12.71069 -12.61411 -12.47028 -12.42572 -12.35011 -12.25513 -12.10160 -12.04168 -11.93370 -11.71617 -11.37467 -11.08494 -11.01194 -10.91676 -10.61929 -10.60263 -8.72542 -6.44011 0.46894 1.33815 1.48650 1.55687 1.61487 1.74316 1.76033 1.82211 2.51052 2.76542 2.93906 3.08064 3.13020 3.21268 3.29610 3.75733 3.80860 3.85153 4.00998 4.06252 4.09692 4.11787 4.25457 4.27400 4.31614 4.38987 4.45157 4.57155 4.63799 4.75205 4.83998 4.86704 4.88711 4.97668 5.02270 5.02706 5.06671 5.09224 5.18190 5.18802 5.20872 5.39525 5.54709 5.82936 5.88019 6.09281 6.35194 6.51264 6.57374 6.67791 7.34059 8.69387 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.003902 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.417636 B = 7174.941537 C = 7432.240524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.044 4.044 3 C -0.161 4.161 4 C -0.100 4.100 5 H 0.146 0.854 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.071 4.071 9 C -0.117 4.117 10 C 0.524 3.476 11 O -0.518 6.518 12 N -0.571 5.571 13 C 0.106 3.894 14 C 0.017 3.983 15 H 0.105 0.895 16 C 0.240 3.760 17 N -0.476 5.476 18 C 0.027 3.973 19 C -0.619 4.619 20 H 0.043 0.957 21 C -0.027 4.027 22 N -0.930 5.930 23 Si 1.108 2.892 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.264 1.264 27 C 0.516 3.484 28 O -0.528 6.528 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.001 0.999 45 H 0.033 0.967 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.000 4.759 -3.887 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.045 4.045 3 C -0.219 4.219 4 C -0.121 4.121 5 H 0.164 0.836 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.074 4.074 9 C -0.174 4.174 10 C 0.316 3.684 11 O -0.392 6.392 12 N -0.313 5.313 13 C -0.017 4.017 14 C -0.006 4.006 15 H 0.123 0.877 16 C -0.077 4.077 17 N -0.153 5.153 18 C -0.012 4.012 19 C -0.657 4.657 20 H 0.061 0.939 21 C -0.226 4.226 22 N -0.567 5.567 23 Si 0.930 3.070 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.189 1.189 27 C 0.308 3.692 28 O -0.402 6.402 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.019 0.981 45 H 0.051 0.949 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.174 3.328 -2.600 27.500 hybrid contribution -0.058 0.975 0.183 0.994 sum -27.232 4.303 -2.417 27.675 Atomic orbital electron populations 1.21761 0.88552 1.04290 1.04005 1.21956 0.99586 0.93495 0.89443 1.22102 0.99721 0.95577 1.04473 1.23264 0.86703 0.98798 1.03301 0.83643 1.22368 1.04403 0.92769 0.95917 1.22471 1.05030 0.92772 0.94881 1.22465 0.86626 0.98305 0.99966 1.21522 1.01901 1.02286 0.91663 1.22128 0.92251 0.72578 0.81492 1.90721 1.70038 1.46142 1.32251 1.47039 1.10314 1.65300 1.08650 1.21751 0.78306 0.95853 1.05800 1.19206 0.98881 0.94607 0.87860 0.87702 1.29234 0.91174 0.92789 0.94491 1.80979 1.11065 1.11171 1.12119 1.19095 0.88132 0.97356 0.96639 1.22266 0.94954 0.93041 1.55396 0.93861 1.27172 0.96365 1.06357 0.92744 1.70908 1.39448 0.98559 1.47735 0.83038 0.75385 0.70867 0.77691 1.20271 1.20754 1.18900 1.22230 0.92617 0.72665 0.81726 1.90775 1.70275 1.46265 1.32846 0.90729 0.89933 0.89978 0.95162 0.89566 0.90383 0.94151 0.85438 0.92957 0.85175 0.87177 0.91797 0.92199 0.88954 0.86207 0.98081 0.94894 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 7.79 71.98 0.56 -0.04 16 2 C -0.04 -0.56 0.59 -50.50 -0.03 -0.59 16 3 C -0.16 -2.39 8.05 71.98 0.58 -1.81 16 4 C -0.10 -1.78 3.47 -9.74 -0.03 -1.81 16 5 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 6 C -0.12 -1.84 5.63 31.57 0.18 -1.66 16 7 C -0.11 -1.63 5.20 31.57 0.16 -1.47 16 8 C -0.07 -1.14 0.65 -51.12 -0.03 -1.17 16 9 C -0.12 -1.35 8.05 71.98 0.58 -0.77 16 10 C 0.52 13.97 5.06 88.03 0.45 14.41 16 11 O -0.52 -17.01 15.98 -2.87 -0.05 -17.06 16 12 N -0.57 -17.14 1.54 -753.52 -1.16 -18.30 16 13 C 0.11 3.74 4.61 86.38 0.40 4.14 16 14 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 15 H 0.11 4.43 8.14 -2.39 -0.02 4.41 16 16 C 0.24 11.22 11.67 89.43 1.04 12.26 16 17 N -0.48 -23.52 18.17 20.02 0.36 -23.15 16 18 C 0.03 1.34 3.74 29.85 0.11 1.46 16 19 C -0.62 -35.46 8.60 25.60 0.22 -35.24 16 20 H 0.04 2.49 7.59 -2.91 -0.02 2.46 16 21 C -0.03 -1.59 5.46 84.65 0.46 -1.13 16 22 N -0.93 -57.10 13.65 21.45 0.29 -56.81 16 23 Si 1.11 51.70 29.90 68.60 2.05 53.75 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 27 C 0.52 15.07 4.67 88.02 0.41 15.48 16 28 O -0.53 -20.10 14.77 -2.85 -0.04 -20.14 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.20 7.28 -2.39 -0.02 0.18 16 31 H 0.08 0.17 6.86 -2.39 -0.02 0.15 16 32 H 0.03 0.64 5.27 -2.39 -0.01 0.62 16 33 H 0.09 0.99 7.94 -2.39 -0.02 0.97 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.94 7.87 -2.39 -0.02 0.92 16 36 H 0.13 1.05 8.06 -2.39 -0.02 1.04 16 37 H 0.05 1.02 7.87 -2.39 -0.02 1.00 16 38 H 0.13 0.85 7.84 -2.38 -0.02 0.83 16 39 H 0.11 0.48 6.97 -2.38 -0.02 0.47 16 40 H 0.06 0.78 7.94 -2.39 -0.02 0.76 16 41 H 0.06 0.86 8.13 -2.39 -0.02 0.85 16 42 H 0.09 3.36 7.38 -2.39 -0.02 3.34 16 43 H 0.12 3.98 7.37 -2.39 -0.02 3.96 16 44 H 0.00 0.05 8.01 -2.39 -0.02 0.03 16 45 H 0.03 1.66 8.00 -2.39 -0.02 1.64 16 46 H 0.26 15.92 7.22 -92.71 -0.67 15.26 16 Total: -1.00 -79.00 361.18 7.57 -71.43 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.08 Total: 7.53 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.03 Total: 2.76 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -0.50 Total: -98.26 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.09 Total: -37.20 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Total: -79.00 7.57 -71.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027206616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.212 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds