Wall clock time and date at job start Tue Mar 31 2020 12:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 110.01584 * 2 1 4 4 N 1.46501 * 109.47123 * 58.60945 * 3 2 1 5 5 C 1.34782 * 119.99870 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00068 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99677 * 179.97438 * 5 4 3 8 8 C 1.39939 * 119.99842 * 185.30180 * 7 5 4 9 9 C 1.38962 * 120.03353 * 33.56801 * 8 7 5 10 10 C 1.38157 * 120.06682 * 179.97438 * 9 8 7 11 11 C 1.38171 * 120.14173 * 359.97438 * 10 9 8 12 12 C 1.38910 * 120.06716 * 359.97438 * 11 10 9 13 13 O 1.35745 * 120.03520 * 180.02562 * 12 11 10 14 14 C 1.34834 * 117.00234 * 185.84451 * 13 12 11 15 15 H 1.08005 * 119.99581 * 5.40628 * 14 13 12 16 16 C 1.38657 * 119.99954 * 185.40692 * 14 13 12 17 17 N 1.31554 * 119.99694 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00082 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47047 * 89.99872 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00013 * 18 16 14 21 21 H 1.48500 * 109.47102 * 329.99871 * 18 16 14 22 22 C 1.38710 * 120.03683 * 213.53379 * 8 7 5 23 23 C 1.54272 * 110.07484 * 121.41864 * 2 1 3 24 24 C 1.54889 * 104.19418 * 95.69716 * 23 2 1 25 25 C 1.54889 * 102.75183 * 37.94502 * 24 23 2 26 26 C 1.53876 * 110.03367 * 238.61064 * 2 1 3 27 27 H 1.09000 * 109.47134 * 60.70167 * 1 2 3 28 28 H 1.09006 * 109.46640 * 180.70046 * 1 2 3 29 29 H 1.09000 * 109.47055 * 300.70092 * 1 2 3 30 30 H 1.08998 * 109.47777 * 298.60891 * 3 2 1 31 31 H 1.09006 * 109.47267 * 178.60685 * 3 2 1 32 32 H 0.96995 * 120.00054 * 359.97438 * 4 3 2 33 33 H 0.97004 * 120.00263 * 5.31248 * 7 5 4 34 34 H 1.07998 * 119.96649 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.93017 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.97005 * 179.97438 * 11 10 9 37 37 H 0.97001 * 120.00321 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.06805 * 359.75136 * 22 8 7 39 39 H 1.08997 * 110.48270 * 214.37929 * 23 2 1 40 40 H 1.09003 * 110.48555 * 337.01813 * 23 2 1 41 41 H 1.08993 * 110.75581 * 279.62576 * 24 23 2 42 42 H 1.09006 * 110.75193 * 156.25634 * 24 23 2 43 43 H 1.09000 * 110.48859 * 203.37978 * 25 24 23 44 44 H 1.08998 * 110.60006 * 80.78634 * 25 24 23 45 45 H 1.09003 * 110.03469 * 359.94653 * 26 2 1 46 46 H 1.08995 * 110.03419 * 121.33316 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 7 1.5448 2.1426 1.1791 5 6 1.8783 3.4315 1.3895 6 8 2.6010 4.0091 0.6007 7 7 1.4097 4.0803 2.4740 8 6 1.6637 5.4469 2.6357 9 6 1.7364 6.2771 1.5237 10 6 1.9865 7.6265 1.6825 11 6 2.1646 8.1551 2.9467 12 6 2.0920 7.3306 4.0623 13 8 2.2665 7.8506 5.3040 14 6 2.3044 6.9798 6.3326 15 1 2.2859 5.9169 6.1413 16 6 2.3671 7.4486 7.6360 17 7 2.4036 6.5989 8.6396 18 14 2.3997 9.2867 7.9668 19 1 1.0097 9.7874 8.1168 20 1 3.1587 9.5516 9.2153 21 1 3.0566 9.9825 6.8311 22 6 1.8423 5.9744 3.9060 23 6 2.0595 -0.7553 1.2365 24 6 2.3299 -2.1897 0.7184 25 6 2.8886 -1.9396 -0.7044 26 6 2.0571 -0.7530 -1.2341 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.7157 1.9475 -0.9021 31 1 3.1434 1.4273 0.0250 32 1 0.9680 1.6820 1.8082 33 1 0.8966 3.5999 3.1425 34 1 1.5973 5.8670 0.5343 35 1 2.0422 8.2698 0.8167 36 1 2.3603 9.2103 3.0676 37 1 2.4478 6.9268 9.5514 38 1 1.7817 5.3321 4.7721 39 1 2.9819 -0.2993 1.5960 40 1 1.3075 -0.7701 2.0255 41 1 1.4054 -2.7653 0.6748 42 1 3.0701 -2.6922 1.3412 43 1 2.7416 -2.8187 -1.3320 44 1 3.9452 -1.6757 -0.6606 45 1 1.2229 -1.1192 -1.8325 46 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066668119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:05 Heat of formation + Delta-G solvation = -43.935023 kcal Electronic energy + Delta-G solvation = -26076.124727 eV Core-core repulsion = 22351.873930 eV Total energy + Delta-G solvation = -3724.250797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53468 -39.46810 -38.69763 -36.65452 -34.60927 -34.20117 -32.34016 -31.43491 -29.40894 -29.13058 -28.68261 -26.88518 -25.20239 -24.52550 -22.17409 -21.73757 -21.13686 -20.27554 -19.22373 -18.44526 -17.76471 -17.58495 -16.37910 -15.71808 -15.55516 -15.32630 -15.03529 -14.76687 -14.34975 -14.25853 -13.97577 -13.92120 -13.69303 -13.45969 -13.29135 -13.05872 -12.74445 -12.29564 -12.21635 -12.05586 -11.66012 -11.48027 -11.40959 -11.19501 -11.16153 -10.93273 -10.88875 -10.87007 -10.84322 -10.72139 -10.27174 -10.02258 -9.64298 -9.47924 -9.11522 -8.83302 -7.74153 -7.23877 -6.41135 -4.08026 2.01581 2.33017 2.72409 3.23042 3.26533 3.34161 3.42332 4.10956 4.16106 4.24874 4.27841 4.35060 4.55505 4.84669 4.90566 4.91777 4.96810 4.99955 5.09552 5.13875 5.31651 5.41169 5.46650 5.49483 5.56980 5.60403 5.66198 5.68177 5.74316 5.79877 5.94865 5.96265 5.99318 6.03251 6.04431 6.20187 6.23213 6.40398 6.47944 6.76648 6.95641 7.19960 7.24968 7.30001 7.64474 7.79998 8.03078 8.06527 8.66534 8.94724 9.57846 10.66766 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.002499 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.047587 B =11202.336761 C =12232.455236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C 0.152 3.848 4 N -0.744 5.744 5 C 0.703 3.297 6 O -0.572 6.572 7 N -0.683 5.683 8 C 0.200 3.800 9 C -0.197 4.197 10 C -0.064 4.064 11 C -0.203 4.203 12 C 0.175 3.825 13 O -0.217 6.217 14 C -0.388 4.388 15 H 0.104 0.896 16 C 0.063 3.937 17 N -0.882 5.882 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.246 4.246 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.395 0.605 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.279 0.721 38 H 0.135 0.865 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 -16.080 -16.776 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C 0.028 3.972 4 N -0.401 5.401 5 C 0.403 3.597 6 O -0.449 6.449 7 N -0.330 5.330 8 C 0.106 3.894 9 C -0.218 4.218 10 C -0.083 4.083 11 C -0.223 4.223 12 C 0.122 3.878 13 O -0.122 6.122 14 C -0.464 4.464 15 H 0.122 0.878 16 C -0.140 4.140 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.268 4.268 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.385 -15.397 -17.221 23.347 hybrid contribution -0.517 0.027 1.065 1.184 sum -3.902 -15.370 -16.156 22.638 Atomic orbital electron populations 1.21916 0.93789 1.01839 1.02072 1.21474 0.96139 0.93970 0.96252 1.21334 0.98657 0.89959 0.87281 1.45137 1.55361 1.11106 1.28478 1.15903 0.80453 0.81303 0.82030 1.90943 1.40250 1.66747 1.46920 1.42595 1.57333 1.08966 1.24060 1.17190 0.97862 0.80728 0.93640 1.20634 1.10526 0.93024 0.97661 1.20523 0.97689 0.94333 0.95751 1.20228 1.11982 0.99513 0.90562 1.18794 0.92439 0.90884 0.85669 1.83612 1.80066 1.36450 1.12061 1.20724 1.52058 0.90234 0.83372 0.87839 1.24457 0.95724 1.00020 0.93812 1.69643 1.48273 1.34833 0.99272 0.86178 0.78832 0.83734 0.78165 1.19924 1.20835 1.18271 1.20899 1.13320 0.96494 0.96105 1.22530 1.01312 0.95270 0.96507 1.22477 1.00768 0.96683 0.96224 1.22359 0.99676 0.97845 0.96378 1.22194 0.99725 0.96783 0.96385 0.92312 0.92262 0.92608 0.91619 0.91495 0.77040 0.76213 0.86048 0.86497 0.86432 0.91107 0.84706 0.91029 0.91450 0.91562 0.91579 0.91739 0.91523 0.91279 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 7.97 37.16 0.30 -0.58 16 2 C -0.08 -0.54 0.66 -153.39 -0.10 -0.64 16 3 C 0.15 1.47 4.21 -4.04 -0.02 1.46 16 4 N -0.74 -8.01 5.06 -65.22 -0.33 -8.34 16 5 C 0.70 10.83 8.30 -86.91 -0.72 10.11 16 6 O -0.57 -11.04 14.04 5.29 0.07 -10.96 16 7 N -0.68 -10.60 5.35 -14.24 -0.08 -10.67 16 8 C 0.20 3.85 6.27 -83.71 -0.52 3.33 16 9 C -0.20 -3.78 8.65 -39.34 -0.34 -4.12 16 10 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 11 C -0.20 -4.14 9.99 -39.36 -0.39 -4.54 16 12 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 13 O -0.22 -5.73 8.58 0.05 0.00 -5.73 16 14 C -0.39 -10.89 9.90 30.89 0.31 -10.59 16 15 H 0.10 2.96 5.53 -52.48 -0.29 2.67 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -25.36 13.96 55.48 0.77 -24.58 16 18 Si 0.91 21.68 28.62 -169.99 -4.86 16.82 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.25 -5.35 9.04 -39.21 -0.35 -5.70 16 23 C -0.12 -0.82 5.37 -25.07 -0.13 -0.96 16 24 C -0.12 -0.76 6.91 -24.74 -0.17 -0.94 16 25 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 26 C -0.11 -0.72 6.11 -25.61 -0.16 -0.87 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.35 6.80 -51.93 -0.35 -0.01 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 32 H 0.40 3.27 6.98 -40.82 -0.28 2.98 16 33 H 0.40 5.01 8.83 -40.82 -0.36 4.65 16 34 H 0.12 2.30 6.42 -52.49 -0.34 1.97 16 35 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.28 7.41 8.31 -40.82 -0.34 7.08 16 38 H 0.14 3.01 5.71 -52.49 -0.30 2.71 16 39 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 40 H 0.07 0.43 7.84 -51.93 -0.41 0.03 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.40 7.67 -51.93 -0.40 0.00 16 46 H 0.07 0.45 7.67 -51.93 -0.40 0.06 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -32.21 370.15 -8.98 -41.19 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.90 Total: 7.77 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.24 Total: -11.06 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.37 Total: -43.60 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.07 Total: -16.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.21 -8.98 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066668119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.745 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds