Wall clock time and date at job start Tue Mar 31 2020 12:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 110.01584 * 2 1 4 4 N 1.46501 * 109.47123 * 58.60945 * 3 2 1 5 5 C 1.34782 * 119.99870 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00068 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99677 * 179.97438 * 5 4 3 8 8 C 1.39939 * 119.99842 * 185.30180 * 7 5 4 9 9 C 1.38962 * 120.03353 * 33.56801 * 8 7 5 10 10 C 1.38157 * 120.06682 * 179.97438 * 9 8 7 11 11 C 1.38171 * 120.14173 * 359.97438 * 10 9 8 12 12 C 1.38910 * 120.06716 * 359.97438 * 11 10 9 13 13 O 1.35745 * 120.03520 * 180.02562 * 12 11 10 14 14 C 1.34834 * 117.00234 * 185.84451 * 13 12 11 15 15 H 1.08005 * 119.99581 * 5.40628 * 14 13 12 16 16 C 1.38657 * 119.99954 * 185.40692 * 14 13 12 17 17 N 1.31554 * 119.99694 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00082 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47047 * 89.99872 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00013 * 18 16 14 21 21 H 1.48500 * 109.47102 * 329.99871 * 18 16 14 22 22 C 1.38710 * 120.03683 * 213.53379 * 8 7 5 23 23 C 1.54272 * 110.07484 * 121.41864 * 2 1 3 24 24 C 1.54889 * 104.19418 * 95.69716 * 23 2 1 25 25 C 1.54889 * 102.75183 * 37.94502 * 24 23 2 26 26 C 1.53876 * 110.03367 * 238.61064 * 2 1 3 27 27 H 1.09000 * 109.47134 * 60.70167 * 1 2 3 28 28 H 1.09006 * 109.46640 * 180.70046 * 1 2 3 29 29 H 1.09000 * 109.47055 * 300.70092 * 1 2 3 30 30 H 1.08998 * 109.47777 * 298.60891 * 3 2 1 31 31 H 1.09006 * 109.47267 * 178.60685 * 3 2 1 32 32 H 0.96995 * 120.00054 * 359.97438 * 4 3 2 33 33 H 0.97004 * 120.00263 * 5.31248 * 7 5 4 34 34 H 1.07998 * 119.96649 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.93017 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.97005 * 179.97438 * 11 10 9 37 37 H 0.97001 * 120.00321 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.06805 * 359.75136 * 22 8 7 39 39 H 1.08997 * 110.48270 * 214.37929 * 23 2 1 40 40 H 1.09003 * 110.48555 * 337.01813 * 23 2 1 41 41 H 1.08993 * 110.75581 * 279.62576 * 24 23 2 42 42 H 1.09006 * 110.75193 * 156.25634 * 24 23 2 43 43 H 1.09000 * 110.48859 * 203.37978 * 25 24 23 44 44 H 1.08998 * 110.60006 * 80.78634 * 25 24 23 45 45 H 1.09003 * 110.03469 * 359.94653 * 26 2 1 46 46 H 1.08995 * 110.03419 * 121.33316 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 7 1.5448 2.1426 1.1791 5 6 1.8783 3.4315 1.3895 6 8 2.6010 4.0091 0.6007 7 7 1.4097 4.0803 2.4740 8 6 1.6637 5.4469 2.6357 9 6 1.7364 6.2771 1.5237 10 6 1.9865 7.6265 1.6825 11 6 2.1646 8.1551 2.9467 12 6 2.0920 7.3306 4.0623 13 8 2.2665 7.8506 5.3040 14 6 2.3044 6.9798 6.3326 15 1 2.2859 5.9169 6.1413 16 6 2.3671 7.4486 7.6360 17 7 2.4036 6.5989 8.6396 18 14 2.3997 9.2867 7.9668 19 1 1.0097 9.7874 8.1168 20 1 3.1587 9.5516 9.2153 21 1 3.0566 9.9825 6.8311 22 6 1.8423 5.9744 3.9060 23 6 2.0595 -0.7553 1.2365 24 6 2.3299 -2.1897 0.7184 25 6 2.8886 -1.9396 -0.7044 26 6 2.0571 -0.7530 -1.2341 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.7157 1.9475 -0.9021 31 1 3.1434 1.4273 0.0250 32 1 0.9680 1.6820 1.8082 33 1 0.8966 3.5999 3.1425 34 1 1.5973 5.8670 0.5343 35 1 2.0422 8.2698 0.8167 36 1 2.3603 9.2103 3.0676 37 1 2.4478 6.9268 9.5514 38 1 1.7817 5.3321 4.7721 39 1 2.9819 -0.2993 1.5960 40 1 1.3075 -0.7701 2.0255 41 1 1.4054 -2.7653 0.6748 42 1 3.0701 -2.6922 1.3412 43 1 2.7416 -2.8187 -1.3320 44 1 3.9452 -1.6757 -0.6606 45 1 1.2229 -1.1192 -1.8325 46 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066668119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:04 Heat of formation + Delta-G solvation = -63.481544 kcal Electronic energy + Delta-G solvation = -26076.972328 eV Core-core repulsion = 22351.873930 eV Total energy + Delta-G solvation = -3725.098397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79243 -40.71656 -39.90028 -38.27052 -35.65924 -35.61158 -34.38879 -32.19489 -30.99987 -30.21989 -29.65827 -27.69631 -27.14413 -25.28360 -23.51910 -23.39803 -22.00176 -21.35838 -20.22030 -19.83629 -19.36059 -19.03373 -17.55622 -17.04586 -16.70278 -16.58036 -16.29407 -15.96084 -15.76015 -15.62177 -15.42689 -15.17035 -14.69273 -14.62509 -14.52299 -14.17799 -13.99810 -13.87371 -13.34335 -13.27657 -12.81610 -12.78279 -12.66832 -12.42611 -12.06993 -11.98886 -11.93223 -11.72353 -11.57244 -11.50833 -11.47223 -11.35510 -11.32850 -11.15530 -10.82031 -10.17020 -9.36912 -8.88428 -8.49104 -6.21644 0.43490 0.66805 1.33710 1.37426 1.53712 1.55187 2.03150 2.29913 2.79280 3.08265 3.11663 3.17276 3.55693 3.62436 3.74518 4.11709 4.26141 4.32349 4.32608 4.40310 4.43607 4.47106 4.59969 4.61872 4.67656 4.74340 4.80484 4.81088 4.92220 4.98108 4.98862 5.08590 5.15357 5.23396 5.26499 5.32370 5.33637 5.37770 5.46699 5.48515 5.50426 5.52182 5.65863 5.75887 5.88216 5.98467 6.23914 6.85544 6.90885 7.42427 7.59110 8.62345 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.002499 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.047587 B =11202.336761 C =12232.455236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C 0.152 3.848 4 N -0.722 5.722 5 C 0.701 3.299 6 O -0.611 6.611 7 N -0.677 5.677 8 C 0.202 3.798 9 C -0.192 4.192 10 C -0.051 4.051 11 C -0.204 4.204 12 C 0.141 3.859 13 O -0.240 6.240 14 C -0.397 4.397 15 H 0.081 0.919 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.257 4.257 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.113 4.113 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.410 0.590 33 H 0.417 0.583 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.284 0.716 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -16.285 -18.661 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C 0.028 3.972 4 N -0.379 5.379 5 C 0.401 3.599 6 O -0.490 6.490 7 N -0.325 5.325 8 C 0.107 3.893 9 C -0.213 4.213 10 C -0.070 4.070 11 C -0.223 4.223 12 C 0.091 3.909 13 O -0.147 6.147 14 C -0.474 4.474 15 H 0.099 0.901 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.279 4.279 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.163 4.163 26 C -0.151 4.151 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.269 -15.674 -19.126 25.094 hybrid contribution -0.267 -0.072 1.369 1.396 sum -4.536 -15.745 -17.758 24.162 Atomic orbital electron populations 1.21915 0.92817 1.02671 1.02094 1.21418 0.96759 0.91962 0.96780 1.21446 0.97927 0.91469 0.86363 1.45017 1.54484 1.09479 1.28879 1.16048 0.80084 0.82353 0.81383 1.90911 1.42014 1.67962 1.48127 1.42495 1.57361 1.07886 1.24732 1.17228 0.96854 0.82459 0.92766 1.20927 1.09160 0.93521 0.97735 1.20970 0.95327 0.94461 0.96227 1.20528 1.11334 1.00178 0.90288 1.19335 0.93884 0.92156 0.85504 1.83557 1.82294 1.36166 1.12664 1.20678 1.52449 0.89775 0.84474 0.90103 1.25251 0.95523 1.04450 0.93474 1.69721 1.50063 1.36715 0.99816 0.85241 0.79257 0.78262 0.78150 1.18990 1.19373 1.18641 1.20857 1.14186 0.96116 0.96698 1.22533 1.00786 0.95814 0.96658 1.22477 1.01243 0.96091 0.96124 1.22367 0.99224 0.98117 0.96561 1.22209 1.00097 0.96710 0.96046 0.92392 0.91058 0.92496 0.92119 0.92923 0.75285 0.74540 0.85274 0.82317 0.84754 0.90595 0.86301 0.92598 0.90705 0.90590 0.91598 0.90662 0.92209 0.90146 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.97 71.98 0.57 -0.85 16 2 C -0.07 -0.85 0.66 -51.46 -0.03 -0.88 16 3 C 0.15 2.80 4.21 86.38 0.36 3.17 16 4 N -0.72 -14.71 5.06 -478.53 -2.42 -17.13 16 5 C 0.70 20.96 8.30 179.05 1.49 22.44 16 6 O -0.61 -23.07 14.04 -3.99 -0.06 -23.12 16 7 N -0.68 -20.55 5.35 -317.22 -1.70 -22.25 16 8 C 0.20 7.70 6.27 38.13 0.24 7.94 16 9 C -0.19 -6.99 8.65 22.42 0.19 -6.80 16 10 C -0.05 -1.74 10.03 22.23 0.22 -1.52 16 11 C -0.20 -8.01 9.99 22.41 0.22 -7.78 16 12 C 0.14 6.67 6.64 22.56 0.15 6.82 16 13 O -0.24 -12.95 8.58 -22.73 -0.20 -13.15 16 14 C -0.40 -23.17 9.90 67.92 0.67 -22.50 16 15 H 0.08 4.91 5.53 -2.91 -0.02 4.90 16 16 C 0.01 0.66 5.49 84.83 0.47 1.13 16 17 N -0.92 -54.51 13.96 21.61 0.30 -54.21 16 18 Si 0.97 45.11 28.62 68.60 1.96 47.07 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.26 -11.39 9.04 22.51 0.20 -11.18 16 23 C -0.12 -1.50 5.37 31.67 0.17 -1.33 16 24 C -0.12 -1.29 6.91 31.88 0.22 -1.07 16 25 C -0.13 -1.32 6.83 31.67 0.22 -1.10 16 26 C -0.11 -1.24 6.11 31.32 0.19 -1.05 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.57 6.80 -2.39 -0.02 0.56 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.15 8.12 -2.38 -0.02 1.13 16 32 H 0.41 6.09 6.98 -92.71 -0.65 5.44 16 33 H 0.42 10.12 8.83 -92.71 -0.82 9.30 16 34 H 0.13 4.59 6.42 -2.91 -0.02 4.57 16 35 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 36 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 37 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.12 5.61 5.71 -2.91 -0.02 5.59 16 39 H 0.06 0.88 7.84 -2.39 -0.02 0.86 16 40 H 0.07 0.82 7.84 -2.39 -0.02 0.80 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.73 7.67 -2.39 -0.02 0.71 16 46 H 0.06 0.78 7.67 -2.39 -0.02 0.76 16 Total: -1.00 -70.90 370.15 3.00 -67.90 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.46 Total: 29.44 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.56 Total: -14.56 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -3.81 Total: -93.59 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.25 Total: -36.27 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.96 Total: 47.07 kcal Total: -70.90 3.00 -67.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066668119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.419 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds