Wall clock time and date at job start Tue Mar 31 2020 12:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21277 * 119.99884 * 2 1 4 4 N 1.34777 * 119.99765 * 179.72497 * 2 1 3 5 5 C 1.46502 * 119.99887 * 174.99182 * 4 2 1 6 6 H 1.08997 * 109.46728 * 34.07130 * 5 4 2 7 7 C 1.52997 * 109.46951 * 154.07410 * 5 4 2 8 8 C 1.50694 * 109.47360 * 294.99775 * 7 5 4 9 9 O 1.21284 * 120.00007 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00111 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00057 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99813 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.47245 * 89.99990 * 12 10 8 14 14 H 1.08000 * 120.00023 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00037 * 179.97438 * 13 12 10 16 16 N 1.31524 * 119.99870 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00318 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47039 * 89.99572 * 17 15 13 19 19 H 1.48497 * 109.47347 * 209.99973 * 17 15 13 20 20 H 1.48506 * 109.46831 * 330.00261 * 17 15 13 21 21 C 1.50702 * 109.46791 * 274.07498 * 5 4 2 22 22 C 1.38233 * 119.99703 * 319.23270 * 21 5 4 23 23 C 1.38241 * 119.99537 * 179.77177 * 22 21 5 24 24 C 1.38235 * 119.99903 * 0.49954 * 23 22 21 25 25 C 1.50699 * 119.99856 * 179.73106 * 24 23 22 26 26 C 1.38235 * 119.99836 * 359.75014 * 24 23 22 27 27 C 1.38227 * 120.00426 * 0.02562 * 26 24 23 28 28 H 1.08997 * 109.46617 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47270 * 120.00261 * 1 2 3 30 30 H 1.09002 * 109.46810 * 240.00564 * 1 2 3 31 31 H 0.96996 * 120.00096 * 354.98405 * 4 2 1 32 32 H 1.08995 * 109.47098 * 55.00196 * 7 5 4 33 33 H 1.09000 * 109.47065 * 174.99731 * 7 5 4 34 34 H 1.09001 * 109.46942 * 90.00094 * 11 10 8 35 35 H 1.08997 * 109.47400 * 210.00227 * 11 10 8 36 36 H 1.08996 * 109.47133 * 330.00135 * 11 10 8 37 37 H 1.09009 * 109.46734 * 209.99940 * 12 10 8 38 38 H 1.08996 * 109.47259 * 329.99450 * 12 10 8 39 39 H 0.97001 * 119.99400 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.00407 * 359.97438 * 22 21 5 41 41 H 1.08000 * 120.00123 * 180.23237 * 23 22 21 42 42 H 1.09005 * 109.46946 * 270.02335 * 25 24 23 43 43 H 1.08999 * 109.47183 * 30.02042 * 25 24 23 44 44 H 1.09001 * 109.47041 * 150.02423 * 25 24 23 45 45 H 1.08005 * 119.99506 * 179.97438 * 26 24 23 46 46 H 1.07999 * 120.00438 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.6418 -1.1702 -0.1051 6 1 4.0461 -0.2928 0.3996 7 6 4.2000 -2.4365 0.5473 8 6 3.9125 -2.4083 2.0263 9 8 3.3189 -1.4681 2.5108 10 7 4.3148 -3.4278 2.8106 11 6 5.0313 -4.5636 2.2253 12 6 4.0347 -3.4005 4.2483 13 6 2.7030 -4.0544 4.5132 14 1 2.1231 -4.4502 3.6926 15 6 2.2250 -4.1472 5.8031 16 7 2.9315 -3.6656 6.8025 17 14 0.5740 -4.9570 6.1314 18 1 0.7731 -6.4099 6.3650 19 1 -0.0484 -4.3433 7.3318 20 1 -0.3151 -4.7617 4.9581 21 6 4.0353 -1.1390 -1.5595 22 6 3.3376 -1.8976 -2.4807 23 6 3.6956 -1.8654 -3.8156 24 6 4.7577 -1.0825 -4.2275 25 6 5.1518 -1.0520 -5.6818 26 6 5.4586 -0.3279 -3.3055 27 6 5.0978 -0.3565 -1.9714 28 1 -0.3632 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8901 31 1 1.6987 -2.0052 0.0831 32 1 3.7287 -3.3126 0.1021 33 1 5.2773 -2.4829 0.3874 34 1 6.1030 -4.3661 2.2444 35 1 4.8174 -5.4640 2.8013 36 1 4.7064 -4.7060 1.1946 37 1 4.8172 -3.9409 4.7812 38 1 4.0072 -2.3671 4.5936 39 1 2.5953 -3.7313 7.7100 40 1 2.5107 -2.5130 -2.1581 41 1 3.1481 -2.4551 -4.5359 42 1 5.8879 -1.8323 -5.8752 43 1 4.2708 -1.2222 -6.3006 44 1 5.5818 -0.0794 -5.9214 45 1 6.2888 0.2835 -3.6274 46 1 5.6456 0.2327 -1.2510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:31 Heat of formation + Delta-G solvation = -56.991571 kcal Electronic energy + Delta-G solvation = -26861.720886 eV Core-core repulsion = 23136.903915 eV Total energy + Delta-G solvation = -3724.816971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.28801 -38.94834 -38.65730 -35.58980 -34.69948 -32.71538 -32.64239 -31.04929 -30.96686 -29.16394 -27.88950 -26.94694 -25.68352 -23.72838 -22.86227 -22.18999 -20.87849 -20.11366 -18.49827 -17.01049 -16.68116 -16.56850 -16.23076 -15.70084 -15.32373 -15.14770 -14.88775 -14.76405 -14.50745 -14.12293 -13.93250 -13.50096 -13.29369 -13.14073 -12.96548 -12.62668 -12.48731 -12.34918 -12.21045 -12.15526 -11.98587 -11.87009 -11.71683 -11.38913 -11.23589 -11.17568 -10.98051 -10.89103 -10.58869 -10.18650 -9.65881 -9.63971 -9.08728 -8.98110 -8.80757 -8.54308 -8.46297 -7.65918 -6.06858 -4.11973 1.21569 1.33872 2.94112 3.26764 3.32687 3.34854 3.37359 3.45311 3.66889 3.94836 4.41046 4.65441 4.70659 4.82421 4.90450 4.96380 5.03986 5.11421 5.25412 5.28409 5.31393 5.35829 5.37915 5.43108 5.52158 5.58106 5.58850 5.63749 5.71251 5.86688 5.91205 5.93827 5.97320 6.09341 6.17621 6.33906 6.48320 6.50162 6.74323 6.92496 7.03068 7.42667 7.51397 7.73144 7.89128 8.20565 8.39289 8.50273 8.87260 9.07445 9.53116 11.01232 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.003321 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.310913 B = 8430.060179 C = 9204.617983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.521 3.479 3 O -0.548 6.548 4 N -0.711 5.711 5 C 0.202 3.798 6 H 0.105 0.895 7 C -0.145 4.145 8 C 0.500 3.500 9 O -0.529 6.529 10 N -0.603 5.603 11 C 0.083 3.917 12 C 0.245 3.755 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.094 4.094 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.099 4.099 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 0.468 -22.665 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.308 3.692 3 O -0.425 6.425 4 N -0.362 5.362 5 C 0.097 3.903 6 H 0.122 0.878 7 C -0.186 4.186 8 C 0.286 3.714 9 O -0.406 6.406 10 N -0.336 5.336 11 C -0.061 4.061 12 C 0.126 3.874 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.095 4.095 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.092 4.092 25 C -0.170 4.170 26 C -0.138 4.138 27 C -0.117 4.117 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.138 0.862 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.989 1.749 -22.177 22.446 hybrid contribution -1.090 -1.137 0.393 1.623 sum 1.899 0.612 -21.784 21.875 Atomic orbital electron populations 1.21902 0.92173 1.05173 1.04115 1.20605 0.90327 0.83458 0.74801 1.90677 1.70823 1.31438 1.49542 1.45777 1.06572 1.08954 1.74851 1.19459 0.81162 0.99400 0.90322 0.87753 1.22042 1.03386 0.98465 0.94701 1.20191 0.80253 0.83189 0.87778 1.90726 1.40519 1.34125 1.75237 1.48164 1.55465 1.18896 1.11069 1.21637 0.95539 0.90747 0.98202 1.19278 0.96040 0.98842 0.73223 1.21400 1.04228 1.38119 0.92666 0.92560 1.24950 0.97580 0.95616 0.96034 1.69938 1.38146 1.45707 0.99509 0.86498 0.83821 0.79205 0.77870 1.20673 1.21091 1.19945 1.20261 0.96272 0.97229 0.95742 1.20908 0.99414 0.98794 0.92812 1.20974 0.97552 0.99753 0.95820 1.19904 0.96114 0.97300 0.95892 1.20775 1.01698 1.02355 0.92130 1.20986 1.00067 0.99847 0.92939 1.21032 0.96727 0.98057 0.95934 0.89295 0.89847 0.89167 0.76734 0.88942 0.88106 0.93761 0.90804 0.92519 0.95117 0.93861 0.92694 0.86279 0.86313 0.91295 0.91729 0.91685 0.86169 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.32 36.01 0.37 -1.64 16 2 C 0.52 8.29 7.90 -10.98 -0.09 8.20 16 3 O -0.55 -10.99 16.70 5.56 0.09 -10.89 16 4 N -0.71 -10.16 3.47 -54.93 -0.19 -10.35 16 5 C 0.20 2.91 1.78 -69.08 -0.12 2.79 16 6 H 0.10 1.85 7.15 -51.93 -0.37 1.48 16 7 C -0.15 -1.98 3.77 -27.89 -0.11 -2.09 16 8 C 0.50 9.81 7.53 -10.99 -0.08 9.72 16 9 O -0.53 -12.84 14.93 5.55 0.08 -12.76 16 10 N -0.60 -12.29 2.86 -182.96 -0.52 -12.81 16 11 C 0.08 1.24 10.24 59.84 0.61 1.86 16 12 C 0.25 6.33 5.16 -5.19 -0.03 6.31 16 13 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.09 -1.17 4.92 -104.62 -0.51 -1.68 16 22 C -0.10 -1.10 9.32 -39.58 -0.37 -1.47 16 23 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 24 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 25 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 26 C -0.12 -1.26 9.70 -39.59 -0.38 -1.65 16 27 C -0.10 -1.19 9.67 -39.59 -0.38 -1.57 16 28 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.89 8.62 -40.82 -0.35 4.54 16 32 H 0.09 1.06 7.40 -51.93 -0.38 0.67 16 33 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 37 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 38 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.12 1.13 7.74 -52.49 -0.41 0.72 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.12 1.41 8.03 -52.49 -0.42 0.99 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -36.16 389.03 -8.37 -44.53 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.26 Total: 3.78 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.15 Total: 1.91 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.02 Total: -48.91 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.18 Total: -23.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.16 -8.37 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.466 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds