Wall clock time and date at job start Tue Mar 31 2020 12:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21277 * 119.99884 * 2 1 4 4 N 1.34777 * 119.99765 * 179.72497 * 2 1 3 5 5 C 1.46502 * 119.99887 * 174.99182 * 4 2 1 6 6 H 1.08997 * 109.46728 * 34.07130 * 5 4 2 7 7 C 1.52997 * 109.46951 * 154.07410 * 5 4 2 8 8 C 1.50694 * 109.47360 * 294.99775 * 7 5 4 9 9 O 1.21284 * 120.00007 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00111 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00057 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99813 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.47245 * 89.99990 * 12 10 8 14 14 H 1.08000 * 120.00023 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00037 * 179.97438 * 13 12 10 16 16 N 1.31524 * 119.99870 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00318 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47039 * 89.99572 * 17 15 13 19 19 H 1.48497 * 109.47347 * 209.99973 * 17 15 13 20 20 H 1.48506 * 109.46831 * 330.00261 * 17 15 13 21 21 C 1.50702 * 109.46791 * 274.07498 * 5 4 2 22 22 C 1.38233 * 119.99703 * 319.23270 * 21 5 4 23 23 C 1.38241 * 119.99537 * 179.77177 * 22 21 5 24 24 C 1.38235 * 119.99903 * 0.49954 * 23 22 21 25 25 C 1.50699 * 119.99856 * 179.73106 * 24 23 22 26 26 C 1.38235 * 119.99836 * 359.75014 * 24 23 22 27 27 C 1.38227 * 120.00426 * 0.02562 * 26 24 23 28 28 H 1.08997 * 109.46617 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47270 * 120.00261 * 1 2 3 30 30 H 1.09002 * 109.46810 * 240.00564 * 1 2 3 31 31 H 0.96996 * 120.00096 * 354.98405 * 4 2 1 32 32 H 1.08995 * 109.47098 * 55.00196 * 7 5 4 33 33 H 1.09000 * 109.47065 * 174.99731 * 7 5 4 34 34 H 1.09001 * 109.46942 * 90.00094 * 11 10 8 35 35 H 1.08997 * 109.47400 * 210.00227 * 11 10 8 36 36 H 1.08996 * 109.47133 * 330.00135 * 11 10 8 37 37 H 1.09009 * 109.46734 * 209.99940 * 12 10 8 38 38 H 1.08996 * 109.47259 * 329.99450 * 12 10 8 39 39 H 0.97001 * 119.99400 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.00407 * 359.97438 * 22 21 5 41 41 H 1.08000 * 120.00123 * 180.23237 * 23 22 21 42 42 H 1.09005 * 109.46946 * 270.02335 * 25 24 23 43 43 H 1.08999 * 109.47183 * 30.02042 * 25 24 23 44 44 H 1.09001 * 109.47041 * 150.02423 * 25 24 23 45 45 H 1.08005 * 119.99506 * 179.97438 * 26 24 23 46 46 H 1.07999 * 120.00438 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.6418 -1.1702 -0.1051 6 1 4.0461 -0.2928 0.3996 7 6 4.2000 -2.4365 0.5473 8 6 3.9125 -2.4083 2.0263 9 8 3.3189 -1.4681 2.5108 10 7 4.3148 -3.4278 2.8106 11 6 5.0313 -4.5636 2.2253 12 6 4.0347 -3.4005 4.2483 13 6 2.7030 -4.0544 4.5132 14 1 2.1231 -4.4502 3.6926 15 6 2.2250 -4.1472 5.8031 16 7 2.9315 -3.6656 6.8025 17 14 0.5740 -4.9570 6.1314 18 1 0.7731 -6.4099 6.3650 19 1 -0.0484 -4.3433 7.3318 20 1 -0.3151 -4.7617 4.9581 21 6 4.0353 -1.1390 -1.5595 22 6 3.3376 -1.8976 -2.4807 23 6 3.6956 -1.8654 -3.8156 24 6 4.7577 -1.0825 -4.2275 25 6 5.1518 -1.0520 -5.6818 26 6 5.4586 -0.3279 -3.3055 27 6 5.0978 -0.3565 -1.9714 28 1 -0.3632 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8901 31 1 1.6987 -2.0052 0.0831 32 1 3.7287 -3.3126 0.1021 33 1 5.2773 -2.4829 0.3874 34 1 6.1030 -4.3661 2.2444 35 1 4.8174 -5.4640 2.8013 36 1 4.7064 -4.7060 1.1946 37 1 4.8172 -3.9409 4.7812 38 1 4.0072 -2.3671 4.5936 39 1 2.5953 -3.7313 7.7100 40 1 2.5107 -2.5130 -2.1581 41 1 3.1481 -2.4551 -4.5359 42 1 5.8879 -1.8323 -5.8752 43 1 4.2708 -1.2222 -6.3006 44 1 5.5818 -0.0794 -5.9214 45 1 6.2888 0.2835 -3.6274 46 1 5.6456 0.2327 -1.2510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067509395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:30 Heat of formation + Delta-G solvation = -80.539759 kcal Electronic energy + Delta-G solvation = -26862.742012 eV Core-core repulsion = 23136.903915 eV Total energy + Delta-G solvation = -3725.838097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44804 -40.24702 -39.85923 -36.89290 -36.29070 -34.72287 -33.66138 -32.14475 -31.78768 -30.45228 -29.40233 -27.93646 -27.17335 -25.23734 -23.79374 -23.54865 -21.89631 -21.19149 -20.02539 -18.68933 -18.20249 -17.89089 -17.50755 -16.96138 -16.77868 -16.31890 -16.16387 -15.93979 -15.79809 -15.49005 -14.66655 -14.57278 -14.39720 -14.28625 -14.24645 -13.96129 -13.70031 -13.51622 -13.42894 -13.24926 -13.07870 -13.03055 -12.96529 -12.87831 -12.72131 -12.56169 -12.30158 -12.18993 -12.05855 -11.78966 -11.69381 -10.92509 -10.64042 -10.61351 -10.09446 -9.78873 -9.40313 -9.37952 -8.21576 -6.36772 0.38784 0.53426 1.37241 1.40336 1.50382 1.72453 1.87074 2.30051 2.34451 2.45528 2.87671 3.08250 3.58201 3.76599 3.91131 3.96329 4.06928 4.15929 4.18321 4.23713 4.46158 4.49169 4.51260 4.60583 4.62531 4.65870 4.73983 4.81857 4.88450 4.89981 4.97744 4.98623 5.02790 5.05499 5.21355 5.24159 5.31267 5.47552 5.53461 5.57209 5.73188 5.76373 5.85115 6.06448 6.14375 6.59470 6.71320 6.81541 7.29570 7.33350 7.51816 8.85614 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.003321 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.310913 B = 8430.060179 C = 9204.617983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.507 3.493 3 O -0.601 6.601 4 N -0.704 5.704 5 C 0.206 3.794 6 H 0.059 0.941 7 C -0.125 4.125 8 C 0.493 3.507 9 O -0.587 6.587 10 N -0.610 5.610 11 C 0.077 3.923 12 C 0.259 3.741 13 C -0.537 4.537 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.107 4.107 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.093 4.093 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.410 0.590 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.019 0.981 38 H -0.008 1.008 39 H 0.266 0.734 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.136 0.864 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -2.032 -25.946 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.296 3.704 3 O -0.483 6.483 4 N -0.354 5.354 5 C 0.101 3.899 6 H 0.078 0.922 7 C -0.165 4.165 8 C 0.282 3.718 9 O -0.467 6.467 10 N -0.342 5.342 11 C -0.065 4.065 12 C 0.138 3.862 13 C -0.575 4.575 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.143 4.143 24 C -0.093 4.093 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.246 0.754 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.037 0.963 38 H 0.010 0.990 39 H 0.075 0.925 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.153 0.847 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.040 -0.823 -25.501 25.595 hybrid contribution -0.696 -0.328 1.379 1.579 sum 1.345 -1.151 -24.121 24.186 Atomic orbital electron populations 1.21907 0.88747 1.05828 1.05973 1.21453 0.92151 0.83018 0.73757 1.90648 1.72207 1.33249 1.52147 1.45791 1.06707 1.09146 1.73774 1.19285 0.81160 0.97851 0.91653 0.92229 1.21994 1.05323 0.99555 0.89611 1.21208 0.78786 0.81805 0.90028 1.90703 1.43052 1.36178 1.76789 1.48175 1.55991 1.20944 1.09090 1.21950 0.96404 0.88275 0.99882 1.18719 0.95386 0.95273 0.76849 1.21694 1.04920 1.37952 0.92949 0.92274 1.25928 1.01623 0.96174 0.95829 1.70078 1.40186 1.47015 0.99992 0.85376 0.78777 0.78749 0.77675 1.18911 1.21153 1.19085 1.20033 0.97317 0.98928 0.94509 1.21089 0.99426 0.98523 0.93000 1.21308 0.97510 0.99648 0.95827 1.20301 0.95568 0.96254 0.97211 1.20830 1.02577 1.03185 0.90241 1.21212 1.00746 1.00274 0.92360 1.21134 0.97233 0.98551 0.96821 0.89369 0.86176 0.88791 0.75412 0.85282 0.85535 0.91516 0.91578 0.88317 0.96282 0.98961 0.92549 0.84658 0.83774 0.90081 0.90557 0.91116 0.84657 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 10.32 71.24 0.74 -2.92 16 2 C 0.51 16.44 7.90 87.66 0.69 17.13 16 3 O -0.60 -25.46 16.70 -3.02 -0.05 -25.51 16 4 N -0.70 -19.94 3.47 -446.09 -1.55 -21.49 16 5 C 0.21 5.98 1.78 44.24 0.08 6.06 16 6 H 0.06 2.28 7.15 -2.39 -0.02 2.26 16 7 C -0.12 -3.21 3.77 29.85 0.11 -3.10 16 8 C 0.49 19.53 7.53 87.66 0.66 20.19 16 9 O -0.59 -29.93 14.93 -3.04 -0.05 -29.98 16 10 N -0.61 -24.92 2.86 -851.15 -2.43 -27.35 16 11 C 0.08 2.13 10.24 127.77 1.31 3.44 16 12 C 0.26 13.95 5.16 85.63 0.44 14.39 16 13 C -0.54 -30.29 9.39 25.60 0.24 -30.05 16 14 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 17 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.11 -2.56 4.92 -19.87 -0.10 -2.66 16 22 C -0.10 -1.95 9.32 22.27 0.21 -1.75 16 23 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 24 C -0.09 -1.57 5.88 -19.87 -0.12 -1.69 16 25 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 26 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 27 C -0.12 -2.85 9.67 22.27 0.22 -2.63 16 28 H 0.09 1.96 8.12 -2.39 -0.02 1.94 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.41 9.45 8.62 -92.71 -0.80 8.65 16 32 H 0.13 2.42 7.40 -2.39 -0.02 2.40 16 33 H 0.13 2.67 8.11 -2.39 -0.02 2.65 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 36 H 0.10 1.90 6.44 -2.39 -0.02 1.89 16 37 H 0.02 1.05 8.07 -2.38 -0.02 1.03 16 38 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.14 2.07 7.74 -2.91 -0.02 2.04 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 44 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 45 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.11 2.81 8.03 -2.91 -0.02 2.78 16 Total: -1.00 -84.88 389.03 4.50 -80.38 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.17 Total: 21.93 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.09 Total: 12.40 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.70 Total: -105.38 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.10 Total: -55.48 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -84.88 4.50 -80.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.157 kcal (2) G-P(sol) polarization free energy of solvation -84.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds