Wall clock time and date at job start Tue Mar 31 2020 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38262 * 120.00341 * 2 1 4 4 C 1.38208 * 120.00398 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99933 * 359.95849 * 4 3 2 6 6 C 1.38207 * 120.00138 * 359.85847 * 5 4 3 7 7 C 1.38218 * 120.00226 * 180.02562 * 2 1 3 8 8 C 1.50694 * 119.99782 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.51178 * 34.91157 * 8 7 2 10 10 C 1.53099 * 109.50749 * 274.78371 * 8 7 2 11 11 N 1.47107 * 109.28230 * 183.21747 * 10 8 7 12 12 C 1.46900 * 111.05928 * 182.37320 * 11 10 8 13 13 C 1.50698 * 109.46773 * 170.15045 * 12 11 10 14 14 O 1.21293 * 120.00557 * 353.79847 * 13 12 11 15 15 N 1.34780 * 120.00075 * 173.80567 * 13 12 11 16 16 C 1.37099 * 120.00027 * 180.02562 * 15 13 12 17 17 H 1.07994 * 119.99930 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99603 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99888 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00239 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47442 * 89.99761 * 20 18 16 22 22 H 1.48507 * 109.46784 * 210.00116 * 20 18 16 23 23 H 1.48498 * 109.46855 * 329.99204 * 20 18 16 24 24 C 1.47018 * 110.70410 * 58.58258 * 11 10 8 25 25 H 1.08992 * 109.50320 * 181.44638 * 24 11 10 26 26 C 1.53005 * 109.50308 * 61.36521 * 24 11 10 27 27 C 1.53086 * 109.29604 * 301.40999 * 24 11 10 28 28 O 1.43014 * 109.26073 * 56.86862 * 27 24 11 29 29 H 1.09004 * 109.46967 * 269.97603 * 1 2 3 30 30 H 1.08995 * 109.47319 * 29.97861 * 1 2 3 31 31 H 1.09000 * 109.46906 * 149.98046 * 1 2 3 32 32 H 1.08003 * 119.99138 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.00080 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.99553 * 180.02562 * 5 4 3 35 35 H 1.08004 * 120.00583 * 180.21008 * 6 5 4 36 36 H 1.08996 * 109.50680 * 303.15111 * 10 8 7 37 37 H 1.09001 * 109.50939 * 63.28118 * 10 8 7 38 38 H 1.08994 * 109.46946 * 290.14360 * 12 11 10 39 39 H 1.08993 * 109.47168 * 50.15051 * 12 11 10 40 40 H 0.96993 * 119.99788 * 359.97438 * 15 13 12 41 41 H 0.97000 * 120.00211 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.47074 * 300.08551 * 26 24 11 43 43 H 1.08996 * 109.47070 * 180.08714 * 26 24 11 44 44 H 1.08999 * 109.46916 * 60.08665 * 26 24 11 45 45 H 1.09006 * 109.51140 * 176.80599 * 27 24 11 46 46 H 1.09003 * 109.50978 * 296.93532 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0019 6 6 3.5807 -1.1969 0.0058 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.5327 -2.3959 -0.5882 10 6 1.0853 -2.8849 1.4376 11 7 0.4184 -4.1962 1.4390 12 6 0.0055 -4.5769 2.7964 13 6 -0.8786 -5.7954 2.7292 14 8 -1.2310 -6.2305 1.6533 15 7 -1.2780 -6.4017 3.8648 16 6 -2.0819 -7.5106 3.8036 17 1 -2.3955 -7.8980 2.8456 18 6 -2.4931 -8.1359 4.9743 19 7 -3.2641 -9.1985 4.9158 20 14 -1.9512 -7.4653 6.6315 21 1 -2.9419 -6.4680 7.1099 22 1 -1.8579 -8.5789 7.6095 23 1 -0.6229 -6.8162 6.4923 24 6 1.2881 -5.2222 0.8455 25 1 0.7660 -6.1789 0.8330 26 6 2.5676 -5.3493 1.6747 27 6 1.6453 -4.8159 -0.5866 28 8 2.2637 -3.5264 -0.5708 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6582 2.1326 -0.0004 33 1 4.1204 2.1327 0.0001 34 1 5.3517 0.0001 0.0028 35 1 4.1206 -2.1323 0.0103 36 1 1.9936 -2.9381 2.0378 37 1 0.4145 -2.1352 1.8571 38 1 0.8882 -4.8011 3.3952 39 1 -0.5441 -3.7539 3.2532 40 1 -0.9960 -6.0539 4.7252 41 1 -3.5515 -9.6348 5.7330 42 1 3.0893 -4.3923 1.6870 43 1 3.2126 -6.1091 1.2334 44 1 2.3125 -5.6372 2.6946 45 1 2.3355 -5.5453 -1.0106 46 1 0.7390 -4.7775 -1.1909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075785601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:17 Heat of formation + Delta-G solvation = -61.392830 kcal Electronic energy + Delta-G solvation = -27286.272802 eV Core-core repulsion = 23561.264978 eV Total energy + Delta-G solvation = -3725.007824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61581 -40.38235 -39.53025 -36.87253 -35.86333 -34.45945 -33.75738 -33.21830 -31.72272 -30.09892 -28.27199 -27.53622 -27.10037 -25.33964 -24.77139 -22.86781 -21.77075 -21.23156 -20.51791 -19.89478 -17.95583 -17.73806 -17.39627 -17.24495 -16.84422 -16.72058 -16.16596 -15.57620 -15.46635 -15.38493 -15.32869 -15.02047 -14.77417 -14.51219 -14.26083 -14.09044 -13.91654 -13.85925 -13.30716 -13.21237 -13.08684 -13.07385 -12.88717 -12.75864 -12.44077 -12.39995 -12.09699 -11.98955 -11.94823 -11.76924 -11.51094 -11.25214 -10.76513 -10.34523 -10.23124 -9.66276 -9.47951 -9.25378 -8.41301 -6.01764 0.41065 0.52619 1.29179 1.34520 1.43115 1.95007 2.22188 2.48209 2.67049 2.90531 3.12184 3.16366 3.77173 3.82898 3.92029 3.97029 4.03080 4.08507 4.13932 4.18378 4.26584 4.32385 4.39380 4.46510 4.48486 4.53113 4.57864 4.66640 4.71563 4.78310 4.87126 4.88307 4.90486 5.00662 5.01818 5.17328 5.24287 5.34418 5.52480 5.58969 5.66081 5.73320 5.84125 5.96972 6.03125 6.13576 6.21931 6.59621 6.88448 7.39727 7.96576 8.76304 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.002988 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.184689 B = 9369.808195 C = 9721.488667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.103 4.103 7 C -0.097 4.097 8 C 0.139 3.861 9 H 0.070 0.930 10 C 0.035 3.965 11 N -0.524 5.524 12 C 0.050 3.950 13 C 0.455 3.545 14 O -0.603 6.603 15 N -0.593 5.593 16 C -0.325 4.325 17 H 0.056 0.944 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.233 1.233 24 C 0.039 3.961 25 H 0.075 0.925 26 C -0.173 4.173 27 C 0.079 3.921 28 O -0.381 6.381 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.388 0.612 41 H 0.279 0.721 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.116 0.884 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.307 22.869 -4.870 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.122 4.122 7 C -0.098 4.098 8 C 0.081 3.919 9 H 0.088 0.912 10 C -0.092 4.092 11 N -0.249 5.249 12 C -0.080 4.080 13 C 0.243 3.757 14 O -0.486 6.486 15 N -0.234 5.234 16 C -0.454 4.454 17 H 0.075 0.925 18 C -0.213 4.213 19 N -0.575 5.575 20 Si 0.783 3.217 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.157 1.157 24 C -0.070 4.070 25 H 0.093 0.907 26 C -0.232 4.232 27 C 0.002 3.998 28 O -0.300 6.300 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.223 0.777 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.703 22.485 -5.867 28.046 hybrid contribution 0.116 -0.816 1.456 1.673 sum 15.818 21.669 -4.411 27.189 Atomic orbital electron populations 1.20939 0.90335 1.03411 1.03180 1.19896 0.96808 0.92305 0.99257 1.21281 0.94688 0.97639 1.00916 1.21489 0.94438 0.98827 0.98753 1.21402 1.00918 0.92204 1.00836 1.21079 0.93542 0.98893 0.98643 1.19429 0.94235 0.92617 1.03482 1.20848 0.92606 0.85567 0.92894 0.91222 1.22766 0.98521 0.90765 0.97189 1.61989 1.40907 1.02515 1.19443 1.21876 0.98587 0.96286 0.91289 1.20729 0.84470 0.86828 0.83703 1.90526 1.60291 1.67882 1.29931 1.42043 1.46672 1.27047 1.07687 1.18979 1.26420 1.04922 0.95051 0.92544 1.26078 0.96264 0.95943 1.03029 1.69802 1.35792 1.21247 1.30692 0.85395 0.80403 0.79036 0.76882 1.18108 1.20062 1.15685 1.22405 0.92402 0.96273 0.95899 0.90663 1.22285 0.97876 1.02949 1.00051 1.22620 0.98278 0.84641 0.94267 1.87911 1.42801 1.17345 1.81914 0.90212 0.89920 0.91985 0.83885 0.83702 0.84363 0.86031 0.93053 0.88565 0.90468 0.86226 0.77656 0.91182 0.91241 0.91004 0.93069 0.86648 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.43 71.23 0.67 -1.26 16 2 C -0.08 -1.53 5.88 -19.87 -0.12 -1.64 16 3 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 4 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 5 C -0.14 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.10 -2.12 9.35 22.27 0.21 -1.91 16 7 C -0.10 -2.09 5.07 -19.87 -0.10 -2.19 16 8 C 0.14 3.35 2.52 29.88 0.08 3.43 16 9 H 0.07 1.80 6.16 -2.39 -0.01 1.79 16 10 C 0.04 0.85 4.52 86.30 0.39 1.24 16 11 N -0.52 -16.19 4.38 -874.33 -3.83 -20.02 16 12 C 0.05 1.60 5.25 85.56 0.45 2.05 16 13 C 0.46 20.50 7.35 87.66 0.64 21.15 16 14 O -0.60 -32.99 14.24 -3.07 -0.04 -33.04 16 15 N -0.59 -27.90 5.09 -306.99 -1.56 -29.47 16 16 C -0.32 -18.94 10.16 84.04 0.85 -18.09 16 17 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 18 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 19 N -0.93 -56.34 13.96 21.66 0.30 -56.04 16 20 Si 0.96 38.79 27.74 68.60 1.90 40.70 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 24 C 0.04 1.21 2.64 44.92 0.12 1.33 16 25 H 0.08 2.98 6.09 -2.39 -0.01 2.97 16 26 C -0.17 -4.48 8.41 71.98 0.61 -3.88 16 27 C 0.08 2.15 6.41 72.01 0.46 2.61 16 28 O -0.38 -9.97 8.77 -148.98 -1.31 -11.28 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.06 1.13 6.03 -2.39 -0.01 1.11 16 32 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.12 2.57 7.36 -2.91 -0.02 2.55 16 36 H 0.05 1.20 6.39 -2.39 -0.02 1.18 16 37 H 0.10 2.06 7.91 -2.39 -0.02 2.05 16 38 H 0.08 2.11 6.08 -2.39 -0.01 2.10 16 39 H 0.12 3.13 8.04 -2.39 -0.02 3.11 16 40 H 0.39 15.22 5.76 -92.71 -0.53 14.68 16 41 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.07 1.66 6.06 -2.39 -0.01 1.64 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.37 6.34 -2.39 -0.02 1.35 16 45 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 46 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -74.57 359.93 1.26 -73.30 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: 0.41 Total: 38.57 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.39 Total: -2.72 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -5.09 Total: -105.53 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.35 Total: -44.32 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.70 kcal Total: -74.57 1.26 -73.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075785601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.909 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds