Wall clock time and date at job start Tue Mar 31 2020 12:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38252 * 120.00350 * 2 1 4 4 C 1.38220 * 120.00359 * 180.02562 * 3 2 1 5 5 C 1.38248 * 119.99786 * 359.95109 * 4 3 2 6 6 C 1.38217 * 120.00219 * 359.85581 * 5 4 3 7 7 C 1.38213 * 120.00116 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99698 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.54378 * 324.89398 * 8 7 2 10 10 C 1.53103 * 109.50561 * 85.00329 * 8 7 2 11 11 N 1.47009 * 109.29394 * 176.75861 * 10 8 7 12 12 C 1.46900 * 110.99899 * 177.63002 * 11 10 8 13 13 C 1.50702 * 109.46939 * 293.89118 * 12 11 10 14 14 O 1.21295 * 120.00363 * 353.82057 * 13 12 11 15 15 N 1.34777 * 119.99921 * 173.81006 * 13 12 11 16 16 C 1.37097 * 120.00098 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99938 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47242 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47410 * 119.99610 * 20 18 16 23 23 H 1.48499 * 109.47208 * 240.00092 * 20 18 16 24 24 C 1.47015 * 110.75405 * 301.44998 * 11 10 8 25 25 H 1.08993 * 109.50591 * 298.59281 * 24 11 10 26 26 C 1.53002 * 109.50712 * 178.50441 * 24 11 10 27 27 C 1.53105 * 109.29120 * 58.54864 * 24 11 10 28 28 O 1.43005 * 109.25907 * 303.17336 * 27 24 11 29 29 H 1.09006 * 109.47433 * 269.98271 * 1 2 3 30 30 H 1.09008 * 109.47127 * 29.97928 * 1 2 3 31 31 H 1.09002 * 109.47242 * 149.98028 * 1 2 3 32 32 H 1.08000 * 119.99842 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.99776 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.99692 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00120 * 180.20748 * 6 5 4 36 36 H 1.08997 * 109.50578 * 296.72090 * 10 8 7 37 37 H 1.09004 * 109.50331 * 56.80308 * 10 8 7 38 38 H 1.08992 * 109.47197 * 53.89268 * 12 11 10 39 39 H 1.09000 * 109.46824 * 173.89826 * 12 11 10 40 40 H 0.96995 * 120.00037 * 0.02562 * 15 13 12 41 41 H 0.96991 * 120.00575 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.47056 * 300.17528 * 26 24 11 43 43 H 1.08994 * 109.46914 * 60.17948 * 26 24 11 44 44 H 1.08999 * 109.47047 * 180.17368 * 26 24 11 45 45 H 1.09001 * 109.50277 * 183.23781 * 27 24 11 46 46 H 1.09000 * 109.50274 * 63.11058 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 0.0000 0.0000 6 6 3.5806 -1.1970 0.0040 7 6 2.1980 -1.1969 -0.0005 8 6 1.4444 -2.5020 -0.0005 9 1 0.5346 -2.3977 0.5906 10 6 1.0794 -2.8816 -1.4382 11 7 0.4134 -4.1921 -1.4404 12 6 -0.0042 -4.5682 -2.7976 13 6 -1.0762 -3.6219 -3.2736 14 8 -1.5346 -2.7938 -2.5151 15 7 -1.5253 -3.6956 -4.5422 16 6 -2.5002 -2.8345 -4.9754 17 1 -2.9079 -2.0967 -4.3002 18 6 -2.9636 -2.9109 -6.2831 19 7 -2.4672 -3.8082 -7.1048 20 14 -4.2913 -1.7370 -6.8735 21 1 -4.6790 -0.8295 -5.7638 22 1 -3.7732 -0.9354 -8.0111 23 1 -5.4779 -2.5133 -7.3148 24 6 1.2846 -5.2202 -0.8525 25 1 2.1937 -5.3101 -1.4468 26 6 0.5507 -6.5626 -0.8349 27 6 1.6475 -4.8172 0.5793 28 8 2.2658 -3.5278 0.5640 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3517 0.0000 0.0000 35 1 4.1205 -2.1323 0.0078 36 1 0.4070 -2.1308 -1.8532 37 1 1.9853 -2.9326 -2.0423 38 1 0.8525 -4.5142 -3.4693 39 1 -0.3955 -5.5855 -2.7886 40 1 -1.1589 -4.3580 -5.1487 41 1 -2.7904 -3.8613 -8.0177 42 1 -0.3591 -6.4716 -0.2417 43 1 0.2927 -6.8489 -1.8544 44 1 1.1959 -7.3237 -0.3961 45 1 2.3394 -5.5477 0.9987 46 1 0.7435 -4.7803 1.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075785607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:21 Heat of formation + Delta-G solvation = -49.389426 kcal Electronic energy + Delta-G solvation = -27445.324583 eV Core-core repulsion = 23720.837266 eV Total energy + Delta-G solvation = -3724.487317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30567 -38.96205 -37.92256 -35.59918 -33.94466 -33.44414 -32.28636 -31.25590 -30.84456 -28.60982 -27.21299 -26.37912 -25.51867 -23.85616 -23.08238 -21.76242 -20.62295 -19.95033 -19.15920 -17.87462 -16.77219 -16.64073 -16.12884 -15.62664 -15.36956 -14.98019 -14.71244 -14.49855 -14.38688 -14.05651 -13.85460 -13.66776 -13.54459 -13.24182 -13.01603 -12.75421 -12.43332 -12.24587 -12.08674 -11.92127 -11.79780 -11.60397 -11.51231 -11.24553 -11.09842 -11.04850 -10.93786 -10.63714 -10.35270 -10.30783 -10.22886 -9.60636 -9.49070 -8.72029 -8.51142 -8.41670 -7.99622 -7.91201 -6.42492 -3.83226 1.36603 1.46871 3.15448 3.26211 3.32957 3.65867 3.81063 3.89218 3.92379 4.21278 4.79594 4.83043 4.93995 4.98662 4.99126 5.10460 5.13728 5.23257 5.26384 5.30417 5.38642 5.44849 5.54946 5.60266 5.69802 5.72878 5.74546 5.81116 5.82757 5.88084 5.95912 6.00070 6.04958 6.14291 6.21921 6.24676 6.30234 6.45892 6.52042 6.56029 6.73545 7.06147 7.17288 7.20047 7.35701 7.54576 8.05615 8.60808 9.17381 9.53691 10.05095 10.75371 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.003986 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.604572 B = 7022.184787 C = 8744.046209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.134 4.134 6 C -0.091 4.091 7 C -0.081 4.081 8 C 0.138 3.862 9 H 0.080 0.920 10 C 0.031 3.969 11 N -0.507 5.507 12 C 0.041 3.959 13 C 0.444 3.556 14 O -0.577 6.577 15 N -0.564 5.564 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.928 3.072 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.041 3.959 25 H 0.046 0.954 26 C -0.147 4.147 27 C 0.073 3.927 28 O -0.383 6.383 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 0.601 13.154 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.152 4.152 6 C -0.109 4.109 7 C -0.081 4.081 8 C 0.081 3.919 9 H 0.098 0.902 10 C -0.097 4.097 11 N -0.233 5.233 12 C -0.090 4.090 13 C 0.229 3.771 14 O -0.461 6.461 15 N -0.201 5.201 16 C -0.427 4.427 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.755 3.245 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.068 4.068 25 H 0.064 0.936 26 C -0.204 4.204 27 C -0.004 4.004 28 O -0.302 6.302 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.979 1.190 13.823 17.692 hybrid contribution 0.121 -0.069 -1.550 1.556 sum 11.101 1.121 12.272 16.586 Atomic orbital electron populations 1.21000 0.90566 1.04558 1.02446 1.19770 0.96455 0.92144 0.98216 1.20990 0.94206 0.97333 1.01709 1.21113 0.94320 0.97919 1.00256 1.21092 0.99649 0.92536 1.01935 1.20970 0.93548 0.98233 0.98169 1.19446 0.93880 0.92950 1.01840 1.20883 0.92330 0.84800 0.93915 0.90244 1.22852 0.97959 0.93049 0.95806 1.61830 1.39525 1.01336 1.20565 1.21969 0.97818 1.00354 0.88842 1.19713 0.86524 0.87623 0.83224 1.90481 1.61167 1.39681 1.54747 1.41879 1.35632 1.32866 1.09723 1.19740 1.14026 1.12990 0.95919 0.87841 1.25250 0.98969 0.97813 0.95878 1.69615 1.43407 1.34648 1.06662 0.85822 0.80090 0.79838 0.78736 1.19213 1.20788 1.20756 1.22346 0.94899 0.92926 0.96616 0.93621 1.21846 1.00948 0.94780 1.02859 1.22664 0.98232 0.84505 0.94973 1.87901 1.42783 1.17213 1.82288 0.91199 0.91329 0.89469 0.86013 0.86340 0.86332 0.85567 0.86992 0.94898 0.93621 0.88616 0.77548 0.91939 0.91373 0.91838 0.92147 0.88626 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.22 36.00 0.33 -1.46 16 2 C -0.07 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 6 C -0.09 -1.23 9.35 -39.58 -0.37 -1.60 16 7 C -0.08 -1.18 5.07 -104.62 -0.53 -1.71 16 8 C 0.14 2.12 2.32 -27.83 -0.06 2.05 16 9 H 0.08 1.27 7.00 -51.93 -0.36 0.90 16 10 C 0.03 0.53 4.40 -3.71 -0.02 0.52 16 11 N -0.51 -8.51 4.24 -227.77 -0.96 -9.48 16 12 C 0.04 0.74 5.23 -4.97 -0.03 0.71 16 13 C 0.44 10.30 7.35 -10.98 -0.08 10.22 16 14 O -0.58 -15.00 14.23 5.54 0.08 -14.92 16 15 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 16 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 17 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 20 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.04 0.55 2.59 -67.59 -0.17 0.37 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.15 -1.65 8.92 37.16 0.33 -1.32 16 27 C 0.07 0.90 6.29 37.21 0.23 1.13 16 28 O -0.38 -5.51 9.30 -35.23 -0.33 -5.84 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.89 8.09 -51.92 -0.42 0.47 16 31 H 0.09 1.44 5.40 -51.93 -0.28 1.15 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.64 7.34 -52.49 -0.39 1.25 16 36 H 0.11 2.25 4.79 -51.93 -0.25 2.00 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.10 1.55 5.77 -51.93 -0.30 1.25 16 40 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.73 6.18 -51.93 -0.32 0.41 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -30.56 365.79 -9.26 -39.82 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.80 Total: 13.03 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.40 Total: -6.12 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.30 Total: -47.39 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.25 Total: -20.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.56 -9.26 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075785607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.570 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds