Wall clock time and date at job start Tue Mar 31 2020 12:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38252 * 120.00350 * 2 1 4 4 C 1.38220 * 120.00359 * 180.02562 * 3 2 1 5 5 C 1.38248 * 119.99786 * 359.95109 * 4 3 2 6 6 C 1.38217 * 120.00219 * 359.85581 * 5 4 3 7 7 C 1.38213 * 120.00116 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99698 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.54378 * 324.89398 * 8 7 2 10 10 C 1.53103 * 109.50561 * 85.00329 * 8 7 2 11 11 N 1.47009 * 109.29394 * 176.75861 * 10 8 7 12 12 C 1.46900 * 110.99899 * 177.63002 * 11 10 8 13 13 C 1.50702 * 109.46939 * 293.89118 * 12 11 10 14 14 O 1.21295 * 120.00363 * 353.82057 * 13 12 11 15 15 N 1.34777 * 119.99921 * 173.81006 * 13 12 11 16 16 C 1.37097 * 120.00098 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99938 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47242 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47410 * 119.99610 * 20 18 16 23 23 H 1.48499 * 109.47208 * 240.00092 * 20 18 16 24 24 C 1.47015 * 110.75405 * 301.44998 * 11 10 8 25 25 H 1.08993 * 109.50591 * 298.59281 * 24 11 10 26 26 C 1.53002 * 109.50712 * 178.50441 * 24 11 10 27 27 C 1.53105 * 109.29120 * 58.54864 * 24 11 10 28 28 O 1.43005 * 109.25907 * 303.17336 * 27 24 11 29 29 H 1.09006 * 109.47433 * 269.98271 * 1 2 3 30 30 H 1.09008 * 109.47127 * 29.97928 * 1 2 3 31 31 H 1.09002 * 109.47242 * 149.98028 * 1 2 3 32 32 H 1.08000 * 119.99842 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.99776 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.99692 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00120 * 180.20748 * 6 5 4 36 36 H 1.08997 * 109.50578 * 296.72090 * 10 8 7 37 37 H 1.09004 * 109.50331 * 56.80308 * 10 8 7 38 38 H 1.08992 * 109.47197 * 53.89268 * 12 11 10 39 39 H 1.09000 * 109.46824 * 173.89826 * 12 11 10 40 40 H 0.96995 * 120.00037 * 0.02562 * 15 13 12 41 41 H 0.96991 * 120.00575 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.47056 * 300.17528 * 26 24 11 43 43 H 1.08994 * 109.46914 * 60.17948 * 26 24 11 44 44 H 1.08999 * 109.47047 * 180.17368 * 26 24 11 45 45 H 1.09001 * 109.50277 * 183.23781 * 27 24 11 46 46 H 1.09000 * 109.50274 * 63.11058 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 0.0000 0.0000 6 6 3.5806 -1.1970 0.0040 7 6 2.1980 -1.1969 -0.0005 8 6 1.4444 -2.5020 -0.0005 9 1 0.5346 -2.3977 0.5906 10 6 1.0794 -2.8816 -1.4382 11 7 0.4134 -4.1921 -1.4404 12 6 -0.0042 -4.5682 -2.7976 13 6 -1.0762 -3.6219 -3.2736 14 8 -1.5346 -2.7938 -2.5151 15 7 -1.5253 -3.6956 -4.5422 16 6 -2.5002 -2.8345 -4.9754 17 1 -2.9079 -2.0967 -4.3002 18 6 -2.9636 -2.9109 -6.2831 19 7 -2.4672 -3.8082 -7.1048 20 14 -4.2913 -1.7370 -6.8735 21 1 -4.6790 -0.8295 -5.7638 22 1 -3.7732 -0.9354 -8.0111 23 1 -5.4779 -2.5133 -7.3148 24 6 1.2846 -5.2202 -0.8525 25 1 2.1937 -5.3101 -1.4468 26 6 0.5507 -6.5626 -0.8349 27 6 1.6475 -4.8172 0.5793 28 8 2.2658 -3.5278 0.5640 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3517 0.0000 0.0000 35 1 4.1205 -2.1323 0.0078 36 1 0.4070 -2.1308 -1.8532 37 1 1.9853 -2.9326 -2.0423 38 1 0.8525 -4.5142 -3.4693 39 1 -0.3955 -5.5855 -2.7886 40 1 -1.1589 -4.3580 -5.1487 41 1 -2.7904 -3.8613 -8.0177 42 1 -0.3591 -6.4716 -0.2417 43 1 0.2927 -6.8489 -1.8544 44 1 1.1959 -7.3237 -0.3961 45 1 2.3394 -5.5477 0.9987 46 1 0.7435 -4.7803 1.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075785607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:20 Heat of formation + Delta-G solvation = -69.018201 kcal Electronic energy + Delta-G solvation = -27446.175750 eV Core-core repulsion = 23720.837266 eV Total energy + Delta-G solvation = -3725.338485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.49108 -40.25689 -39.48072 -36.91192 -35.87466 -34.55535 -33.36447 -33.26913 -31.92008 -30.02572 -28.28280 -27.45326 -27.14086 -25.43053 -24.23365 -22.81831 -21.71082 -21.19378 -20.86833 -19.87343 -18.04255 -17.81369 -17.48175 -16.99229 -16.65591 -16.44204 -16.05756 -15.84489 -15.67661 -15.49347 -15.32487 -15.07370 -14.78587 -14.50705 -14.02861 -13.98193 -13.88694 -13.52746 -13.42242 -13.15586 -13.04541 -13.00179 -12.81076 -12.70143 -12.40819 -12.35797 -12.16769 -12.12090 -11.99494 -11.77439 -11.47262 -11.39780 -10.75752 -10.26366 -10.00132 -9.71475 -9.50924 -9.34070 -8.46751 -5.95034 0.36549 0.48081 1.35616 1.40978 1.54915 2.03996 2.26444 2.54857 2.67116 2.85412 3.19737 3.31437 3.77400 3.81424 3.86137 3.91850 4.02679 4.09351 4.15664 4.20470 4.25655 4.33622 4.37594 4.42078 4.48117 4.53923 4.66936 4.70326 4.73711 4.78525 4.81249 4.86112 4.88835 4.99230 5.04924 5.14791 5.28960 5.32874 5.41168 5.53752 5.60133 5.69901 5.78461 5.97420 6.07372 6.09814 6.19457 6.60163 7.12945 7.55775 8.11278 8.71093 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.003986 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.604572 B = 7022.184787 C = 8744.046209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.102 4.102 7 C -0.103 4.103 8 C 0.151 3.849 9 H 0.064 0.936 10 C 0.040 3.960 11 N -0.522 5.522 12 C 0.053 3.947 13 C 0.442 3.558 14 O -0.608 6.608 15 N -0.575 5.575 16 C -0.329 4.329 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.922 5.922 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.040 3.960 25 H 0.050 0.950 26 C -0.142 4.142 27 C 0.069 3.931 28 O -0.386 6.386 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.119 0.881 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.131 0.869 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.136 0.478 13.651 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.151 4.151 6 C -0.120 4.120 7 C -0.104 4.104 8 C 0.093 3.907 9 H 0.082 0.918 10 C -0.088 4.088 11 N -0.248 5.248 12 C -0.078 4.078 13 C 0.229 3.771 14 O -0.494 6.494 15 N -0.212 5.212 16 C -0.458 4.458 17 H 0.098 0.902 18 C -0.212 4.212 19 N -0.563 5.563 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.068 4.068 25 H 0.068 0.932 26 C -0.200 4.200 27 C -0.007 4.007 28 O -0.305 6.305 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.228 0.772 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.149 0.851 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.544 1.039 14.324 19.069 hybrid contribution -0.305 -0.035 -1.643 1.672 sum 12.239 1.004 12.681 17.652 Atomic orbital electron populations 1.20896 0.91194 1.03071 1.02741 1.19894 0.96295 0.92959 0.99430 1.21281 0.95091 0.97327 1.01154 1.21510 0.93965 0.99202 0.98622 1.21452 1.01138 0.91925 1.00554 1.21105 0.93039 0.99270 0.98600 1.19531 0.94679 0.92694 1.03461 1.20617 0.92103 0.85718 0.92219 0.91843 1.22652 0.96537 0.92600 0.97003 1.61824 1.41033 1.02188 1.19742 1.21840 0.96388 0.99668 0.89859 1.20662 0.86654 0.87513 0.82296 1.90466 1.62342 1.41109 1.55461 1.41935 1.35784 1.32958 1.10530 1.19682 1.15752 1.13930 0.96459 0.90241 1.26008 1.00628 0.99151 0.95420 1.69675 1.44164 1.35422 1.07038 0.84899 0.77695 0.77879 0.78053 1.19744 1.19717 1.19590 1.22513 0.94623 0.92795 0.96863 0.93181 1.21840 1.01057 0.94210 1.02857 1.22918 0.99143 0.84263 0.94389 1.87899 1.42785 1.17829 1.81993 0.90053 0.90821 0.92800 0.84181 0.83182 0.83517 0.85367 0.90645 0.95487 0.92391 0.86331 0.77188 0.91364 0.92141 0.92122 0.88948 0.85085 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 9.22 71.23 0.66 -2.95 16 2 C -0.09 -2.47 5.88 -19.87 -0.12 -2.58 16 3 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 4 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 5 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 6 C -0.10 -2.68 9.35 22.27 0.21 -2.47 16 7 C -0.10 -3.09 5.07 -19.87 -0.10 -3.19 16 8 C 0.15 4.79 2.32 29.88 0.07 4.86 16 9 H 0.06 2.17 7.00 -2.39 -0.02 2.15 16 10 C 0.04 1.45 4.40 86.32 0.38 1.83 16 11 N -0.52 -17.73 4.24 -874.53 -3.70 -21.43 16 12 C 0.05 1.93 5.23 85.56 0.45 2.37 16 13 C 0.44 21.28 7.35 87.66 0.64 21.92 16 14 O -0.61 -33.37 14.23 -3.08 -0.04 -33.41 16 15 N -0.57 -29.77 5.29 -306.98 -1.62 -31.39 16 16 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 19 N -0.92 -50.03 13.05 21.66 0.28 -49.74 16 20 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 C 0.04 1.01 2.59 44.93 0.12 1.12 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 26 C -0.14 -2.88 8.92 71.98 0.64 -2.23 16 27 C 0.07 1.59 6.29 72.02 0.45 2.04 16 28 O -0.39 -10.89 9.30 -148.98 -1.38 -12.27 16 29 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 30 H 0.07 2.01 8.09 -2.38 -0.02 1.99 16 31 H 0.05 1.95 5.40 -2.39 -0.01 1.93 16 32 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.13 3.22 7.34 -2.91 -0.02 3.20 16 36 H 0.08 3.27 4.79 -2.39 -0.01 3.26 16 37 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 39 H 0.12 3.75 5.77 -2.39 -0.01 3.73 16 40 H 0.39 19.54 7.90 -92.71 -0.73 18.81 16 41 H 0.28 14.04 8.31 -92.72 -0.77 13.27 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.26 6.18 -2.39 -0.01 1.25 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 45 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -68.19 365.79 1.16 -67.03 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: 0.26 Total: 41.09 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.34 Total: -5.05 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -5.04 Total: -102.56 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.43 Total: -45.68 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.19 1.16 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075785607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -68.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds