Wall clock time and date at job start Tue Mar 31 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48504 * 109.46773 * 270.00061 * 3 2 1 5 5 H 1.48497 * 109.47061 * 30.00260 * 3 2 1 6 6 H 1.48498 * 109.46868 * 150.00056 * 3 2 1 7 7 C 1.37879 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99503 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99851 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.46890 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00439 * 270.00234 * 10 9 7 12 12 C 1.52998 * 109.47300 * 270.00203 * 11 10 9 13 13 C 1.52999 * 117.49900 * 243.62027 * 12 11 10 14 14 C 1.52997 * 60.00209 * 252.50835 * 13 12 11 15 15 C 1.34777 * 119.99776 * 90.00566 * 10 9 7 16 16 O 1.21281 * 120.00115 * 359.97438 * 15 10 9 17 17 C 1.50702 * 120.00138 * 180.02562 * 15 10 9 18 18 C 1.52998 * 109.47505 * 179.97438 * 17 15 10 19 19 C 1.52994 * 109.47556 * 179.97438 * 18 17 15 20 20 O 1.42894 * 109.47573 * 179.97438 * 19 18 17 21 21 C 1.35910 * 117.00621 * 180.02562 * 20 19 18 22 22 C 1.39138 * 120.47706 * 180.24394 * 21 20 19 23 23 C 1.38535 * 118.37336 * 180.24194 * 22 21 20 24 24 C 1.38262 * 119.22035 * 359.47237 * 23 22 21 25 25 N 1.31844 * 120.88422 * 0.30388 * 24 23 22 26 26 C 1.31834 * 121.78446 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00321 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47074 * 60.00711 * 9 7 2 29 29 H 1.08995 * 109.47347 * 300.00230 * 9 7 2 30 30 H 1.09001 * 109.47410 * 29.99835 * 11 10 9 31 31 H 1.08998 * 109.47302 * 149.99869 * 11 10 9 32 32 H 1.09004 * 115.55107 * 29.32684 * 12 11 10 33 33 H 1.08998 * 117.49870 * 0.02562 * 13 12 11 34 34 H 1.09003 * 117.49884 * 145.01815 * 13 12 11 35 35 H 1.09002 * 117.50211 * 252.51497 * 14 13 12 36 36 H 1.09003 * 117.50091 * 107.48889 * 14 13 12 37 37 H 1.09002 * 109.47071 * 59.99454 * 17 15 10 38 38 H 1.09001 * 109.46690 * 299.99605 * 17 15 10 39 39 H 1.08999 * 109.47453 * 59.98925 * 18 17 15 40 40 H 1.09006 * 109.46828 * 300.00037 * 18 17 15 41 41 H 1.09002 * 109.46851 * 59.99617 * 19 18 17 42 42 H 1.08998 * 109.47422 * 300.00280 * 19 18 17 43 43 H 1.07999 * 120.81005 * 0.02562 * 22 21 20 44 44 H 1.08002 * 120.39207 * 179.75678 * 23 22 21 45 45 H 1.08000 * 119.55595 * 180.28266 * 24 23 22 46 46 H 1.07997 * 119.66066 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2445 -3.2656 1.2677 12 6 5.6897 -3.0251 1.7089 13 6 6.6132 -4.2418 1.7971 14 6 6.1108 -3.5684 3.0758 15 6 4.2242 -3.2107 -1.1682 16 8 4.0213 -2.6393 -2.2185 17 6 4.7260 -4.6317 -1.1681 18 6 4.8951 -5.1130 -2.6106 19 6 5.4051 -6.5554 -2.6106 20 8 5.5625 -7.0051 -3.9577 21 6 6.0109 -8.2757 -4.1358 22 6 6.1952 -8.7859 -5.4171 23 6 6.6492 -10.0882 -5.5481 24 6 6.9129 -10.8287 -4.4107 25 7 6.7321 -10.3134 -3.2107 26 6 6.2965 -9.0805 -3.0428 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6805 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.5641 -2.8814 2.0276 31 1 4.0775 -4.3348 1.1376 32 1 6.1293 -2.0816 1.3851 33 1 6.1913 -5.2135 1.5404 34 1 7.6606 -4.0989 1.5311 35 1 6.8276 -2.9825 3.6511 36 1 5.3583 -4.0972 3.6608 37 1 4.0079 -5.2706 -0.6541 38 1 5.6863 -4.6779 -0.6545 39 1 5.6129 -4.4741 -3.1250 40 1 3.9346 -5.0669 -3.1239 41 1 4.6875 -7.1945 -2.0960 42 1 6.3656 -6.6012 -2.0973 43 1 5.9859 -8.1827 -6.2881 44 1 6.7998 -10.5184 -6.5272 45 1 7.2715 -11.8429 -4.5066 46 1 6.1602 -8.6932 -2.0439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:18 Heat of formation + Delta-G solvation = -16.595699 kcal Electronic energy + Delta-G solvation = -25845.387771 eV Core-core repulsion = 22122.322497 eV Total energy + Delta-G solvation = -3723.065275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.85950 -39.46364 -38.43363 -37.30572 -34.69674 -33.84250 -32.59912 -32.41464 -30.53208 -28.90502 -27.33286 -26.10318 -24.19594 -23.40527 -22.50705 -22.35409 -21.25455 -20.76963 -18.77609 -18.18556 -17.18957 -16.95201 -16.86761 -16.59729 -16.44381 -15.47494 -15.27431 -14.92856 -14.74042 -14.37940 -14.09346 -13.91074 -13.77275 -13.36564 -12.98480 -12.81633 -12.64026 -12.50335 -12.32043 -12.11480 -11.75269 -11.57643 -11.51809 -11.48372 -11.29708 -10.92573 -10.78382 -10.56824 -10.37241 -10.14504 -10.02961 -9.93245 -9.75631 -9.54933 -9.04578 -8.74338 -8.60137 -7.77326 -6.10037 -4.08839 0.79322 0.98406 2.77313 3.27960 3.29869 3.33924 3.35894 3.49226 3.67093 3.90300 4.17982 4.35652 4.38331 4.52512 4.64784 4.72845 4.74917 4.83275 4.92634 4.93879 4.97504 5.07407 5.19593 5.22518 5.28860 5.31009 5.36789 5.40280 5.58456 5.62892 5.66975 5.76949 5.77216 5.87083 5.98724 6.06739 6.07883 6.17346 6.29186 6.33876 6.68711 6.92563 6.99227 7.30836 7.59625 7.63397 8.21263 8.45171 8.90373 8.95926 9.50251 11.03322 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.002600 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.136506 B =10768.646166 C =12044.433603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.216 3.784 10 N -0.590 5.590 11 C 0.142 3.858 12 C -0.168 4.168 13 C -0.185 4.185 14 C -0.175 4.175 15 C 0.511 3.489 16 O -0.539 6.539 17 C -0.138 4.138 18 C -0.103 4.103 19 C 0.057 3.943 20 O -0.305 6.305 21 C 0.086 3.914 22 C -0.112 4.112 23 C -0.132 4.132 24 C 0.053 3.947 25 N -0.451 5.451 26 C 0.014 3.986 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.157 0.843 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.954 -18.241 -2.275 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.321 5.321 11 C 0.018 3.982 12 C -0.187 4.187 13 C -0.222 4.222 14 C -0.213 4.213 15 C 0.298 3.702 16 O -0.416 6.416 17 C -0.178 4.178 18 C -0.141 4.141 19 C -0.018 4.018 20 O -0.217 6.217 21 C 0.038 3.962 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.105 4.105 25 N -0.160 5.160 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.174 0.826 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 15.780 -18.114 -2.233 24.127 hybrid contribution 0.149 1.360 -0.392 1.423 sum 15.929 -16.754 -2.625 23.267 Atomic orbital electron populations 1.69895 1.06188 1.26989 1.50503 1.24860 0.94760 0.98949 0.94456 0.86854 0.80165 0.83829 0.78858 1.19924 1.21083 1.19078 1.21314 0.89188 0.94798 1.51359 0.90783 1.19661 0.95657 0.77827 0.97340 1.47859 1.64068 1.15829 1.04344 1.21047 0.93090 0.96874 0.87235 1.22944 0.96905 0.98446 1.00402 1.23057 0.99618 0.97013 1.02538 1.22905 1.03608 1.04071 0.90694 1.20192 0.78235 0.87795 0.84010 1.90686 1.52063 1.67928 1.30915 1.21595 1.03051 0.95622 0.97535 1.21236 1.03930 0.92161 0.96741 1.22992 1.00958 0.96929 0.80892 1.86119 1.80009 1.25361 1.30191 1.20131 0.95279 0.85552 0.95220 1.21007 1.01167 0.96029 0.95697 1.22029 0.98594 0.93809 1.00736 1.22656 0.99823 1.00549 0.87447 1.67519 1.09869 1.12035 1.26603 1.22973 1.01868 0.90945 0.98600 0.92560 0.95219 0.94599 0.89242 0.91071 0.87527 0.88797 0.89151 0.88987 0.88604 0.89140 0.88937 0.89991 0.89751 0.91577 0.91652 0.83918 0.84117 0.82611 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.22 5.16 4.23 -5.20 -0.02 5.14 16 10 N -0.59 -11.56 2.46 -175.07 -0.43 -11.99 16 11 C 0.14 2.10 5.49 -4.05 -0.02 2.08 16 12 C -0.17 -2.07 5.95 -90.62 -0.54 -2.61 16 13 C -0.19 -1.77 9.18 -26.73 -0.25 -2.01 16 14 C -0.18 -1.74 10.25 -26.73 -0.27 -2.02 16 15 C 0.51 9.84 7.67 -10.98 -0.08 9.76 16 16 O -0.54 -12.85 15.56 5.56 0.09 -12.77 16 17 C -0.14 -1.78 4.25 -27.88 -0.12 -1.90 16 18 C -0.10 -1.31 4.87 -26.74 -0.13 -1.44 16 19 C 0.06 0.57 4.75 37.15 0.18 0.74 16 20 O -0.30 -3.57 10.15 -19.46 -0.20 -3.77 16 21 C 0.09 0.92 6.71 -39.07 -0.26 0.66 16 22 C -0.11 -1.03 10.13 -39.14 -0.40 -1.42 16 23 C -0.13 -0.98 10.11 -39.46 -0.40 -1.38 16 24 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 25 N -0.45 -4.87 10.35 -13.13 -0.14 -5.01 16 26 C 0.01 0.15 10.22 -17.38 -0.18 -0.03 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 29 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.07 0.87 6.17 -51.93 -0.32 0.55 16 32 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.02 7.40 -51.93 -0.38 0.63 16 38 H 0.09 0.98 6.84 -51.93 -0.36 0.62 16 39 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 40 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 42 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.16 1.33 6.32 -52.49 -0.33 1.00 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -35.11 382.43 -9.07 -44.18 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.13 Total: 1.05 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.13 Total: -7.50 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.21 Total: -43.77 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.11 Total: -16.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.11 -9.07 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.584 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds