Wall clock time and date at job start Tue Mar 31 2020 12:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48504 * 109.46773 * 270.00061 * 3 2 1 5 5 H 1.48497 * 109.47061 * 30.00260 * 3 2 1 6 6 H 1.48498 * 109.46868 * 150.00056 * 3 2 1 7 7 C 1.37879 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99503 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99851 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.46890 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00439 * 270.00234 * 10 9 7 12 12 C 1.52998 * 109.47300 * 270.00203 * 11 10 9 13 13 C 1.52999 * 117.49900 * 243.62027 * 12 11 10 14 14 C 1.52997 * 60.00209 * 252.50835 * 13 12 11 15 15 C 1.34777 * 119.99776 * 90.00566 * 10 9 7 16 16 O 1.21281 * 120.00115 * 359.97438 * 15 10 9 17 17 C 1.50702 * 120.00138 * 180.02562 * 15 10 9 18 18 C 1.52998 * 109.47505 * 179.97438 * 17 15 10 19 19 C 1.52994 * 109.47556 * 179.97438 * 18 17 15 20 20 O 1.42894 * 109.47573 * 179.97438 * 19 18 17 21 21 C 1.35910 * 117.00621 * 180.02562 * 20 19 18 22 22 C 1.39138 * 120.47706 * 180.24394 * 21 20 19 23 23 C 1.38535 * 118.37336 * 180.24194 * 22 21 20 24 24 C 1.38262 * 119.22035 * 359.47237 * 23 22 21 25 25 N 1.31844 * 120.88422 * 0.30388 * 24 23 22 26 26 C 1.31834 * 121.78446 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00321 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47074 * 60.00711 * 9 7 2 29 29 H 1.08995 * 109.47347 * 300.00230 * 9 7 2 30 30 H 1.09001 * 109.47410 * 29.99835 * 11 10 9 31 31 H 1.08998 * 109.47302 * 149.99869 * 11 10 9 32 32 H 1.09004 * 115.55107 * 29.32684 * 12 11 10 33 33 H 1.08998 * 117.49870 * 0.02562 * 13 12 11 34 34 H 1.09003 * 117.49884 * 145.01815 * 13 12 11 35 35 H 1.09002 * 117.50211 * 252.51497 * 14 13 12 36 36 H 1.09003 * 117.50091 * 107.48889 * 14 13 12 37 37 H 1.09002 * 109.47071 * 59.99454 * 17 15 10 38 38 H 1.09001 * 109.46690 * 299.99605 * 17 15 10 39 39 H 1.08999 * 109.47453 * 59.98925 * 18 17 15 40 40 H 1.09006 * 109.46828 * 300.00037 * 18 17 15 41 41 H 1.09002 * 109.46851 * 59.99617 * 19 18 17 42 42 H 1.08998 * 109.47422 * 300.00280 * 19 18 17 43 43 H 1.07999 * 120.81005 * 0.02562 * 22 21 20 44 44 H 1.08002 * 120.39207 * 179.75678 * 23 22 21 45 45 H 1.08000 * 119.55595 * 180.28266 * 24 23 22 46 46 H 1.07997 * 119.66066 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2445 -3.2656 1.2677 12 6 5.6897 -3.0251 1.7089 13 6 6.6132 -4.2418 1.7971 14 6 6.1108 -3.5684 3.0758 15 6 4.2242 -3.2107 -1.1682 16 8 4.0213 -2.6393 -2.2185 17 6 4.7260 -4.6317 -1.1681 18 6 4.8951 -5.1130 -2.6106 19 6 5.4051 -6.5554 -2.6106 20 8 5.5625 -7.0051 -3.9577 21 6 6.0109 -8.2757 -4.1358 22 6 6.1952 -8.7859 -5.4171 23 6 6.6492 -10.0882 -5.5481 24 6 6.9129 -10.8287 -4.4107 25 7 6.7321 -10.3134 -3.2107 26 6 6.2965 -9.0805 -3.0428 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6805 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.5641 -2.8814 2.0276 31 1 4.0775 -4.3348 1.1376 32 1 6.1293 -2.0816 1.3851 33 1 6.1913 -5.2135 1.5404 34 1 7.6606 -4.0989 1.5311 35 1 6.8276 -2.9825 3.6511 36 1 5.3583 -4.0972 3.6608 37 1 4.0079 -5.2706 -0.6541 38 1 5.6863 -4.6779 -0.6545 39 1 5.6129 -4.4741 -3.1250 40 1 3.9346 -5.0669 -3.1239 41 1 4.6875 -7.1945 -2.0960 42 1 6.3656 -6.6012 -2.0973 43 1 5.9859 -8.1827 -6.2881 44 1 6.7998 -10.5184 -6.5272 45 1 7.2715 -11.8429 -4.5066 46 1 6.1602 -8.6932 -2.0439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080027191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:16 Heat of formation + Delta-G solvation = -39.116446 kcal Electronic energy + Delta-G solvation = -25846.364344 eV Core-core repulsion = 22122.322497 eV Total energy + Delta-G solvation = -3724.041847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.56309 -40.90088 -39.20069 -38.36545 -36.23407 -34.96251 -34.54025 -33.23185 -31.30093 -30.60402 -28.44071 -27.46173 -25.16432 -24.37894 -23.71215 -23.14876 -22.38181 -21.79398 -19.96221 -19.19266 -19.07359 -18.21733 -17.57176 -17.48172 -17.40130 -17.12829 -16.52794 -15.98633 -15.90530 -15.35044 -15.22962 -14.88160 -14.70443 -14.62321 -14.24880 -14.02542 -13.92777 -13.84285 -13.58524 -13.18635 -13.01518 -12.90830 -12.60570 -12.51722 -12.43263 -12.27351 -12.21169 -12.02971 -11.77585 -11.70467 -11.22129 -10.91247 -10.84248 -10.66935 -10.56220 -10.43250 -9.44694 -9.42023 -8.35362 -6.39920 0.15708 0.30333 1.30425 1.34403 1.42656 1.80578 1.95428 2.29094 2.39004 2.83596 2.98731 3.00446 3.52609 3.59968 3.70986 3.88022 3.92654 3.94435 4.03666 4.07954 4.08318 4.17398 4.29309 4.32447 4.36846 4.42289 4.54837 4.60886 4.66106 4.75543 4.76975 4.88361 4.89677 4.96056 5.02195 5.05238 5.12296 5.16025 5.22450 5.35963 5.37729 5.45290 5.60518 5.63054 6.22711 6.26520 6.61263 6.71303 6.97727 7.20799 7.42930 8.81498 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.002600 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.136506 B =10768.646166 C =12044.433603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.240 1.240 7 C -0.533 4.533 8 H 0.030 0.970 9 C 0.225 3.775 10 N -0.597 5.597 11 C 0.140 3.860 12 C -0.191 4.191 13 C -0.165 4.165 14 C -0.166 4.166 15 C 0.498 3.502 16 O -0.597 6.597 17 C -0.121 4.121 18 C -0.098 4.098 19 C 0.062 3.938 20 O -0.327 6.327 21 C 0.066 3.934 22 C -0.126 4.126 23 C -0.123 4.123 24 C 0.047 3.953 25 N -0.477 5.477 26 C 0.005 3.995 27 H 0.268 0.732 28 H 0.046 0.954 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.174 0.826 45 H 0.183 0.817 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.748 -20.191 -1.303 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.163 1.163 7 C -0.572 4.572 8 H 0.049 0.951 9 C 0.103 3.897 10 N -0.327 5.327 11 C 0.017 3.983 12 C -0.211 4.211 13 C -0.202 4.202 14 C -0.203 4.203 15 C 0.287 3.713 16 O -0.479 6.479 17 C -0.160 4.160 18 C -0.136 4.136 19 C -0.012 4.012 20 O -0.240 6.240 21 C 0.019 3.981 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.110 4.110 25 N -0.187 5.187 26 C -0.153 4.153 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.168 0.832 44 H 0.192 0.808 45 H 0.200 0.800 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 18.601 -20.106 -1.211 27.418 hybrid contribution -0.763 1.847 -0.746 2.133 sum 17.838 -18.259 -1.956 25.601 Atomic orbital electron populations 1.70044 1.08126 1.28281 1.52022 1.25837 0.95670 1.03258 0.93974 0.85742 0.79869 0.78599 0.78912 1.20294 1.19919 1.16301 1.21552 0.91564 0.93215 1.50864 0.95147 1.19272 0.92664 0.80975 0.96822 1.47950 1.63569 1.14568 1.06581 1.21278 0.94637 0.97883 0.84481 1.22652 0.95679 0.99418 1.03301 1.23216 0.99522 0.96338 1.01076 1.23010 1.03615 1.03534 0.90174 1.21357 0.77087 0.89956 0.82865 1.90650 1.54559 1.69739 1.32927 1.21559 1.05041 0.91091 0.98328 1.21109 1.02086 0.94241 0.96162 1.22948 1.02635 0.94825 0.80818 1.86068 1.80627 1.26231 1.31075 1.20328 0.96417 0.85269 0.96120 1.21342 1.01213 0.97022 0.95639 1.22384 0.96932 0.92856 1.02083 1.23211 0.98949 1.01746 0.87128 1.67551 1.10855 1.12373 1.27933 1.23179 1.01972 0.90943 0.99162 0.92286 0.93652 0.96618 0.91048 0.88022 0.89454 0.86650 0.88086 0.88257 0.87673 0.86547 0.85412 0.91700 0.92708 0.89820 0.89068 0.83181 0.80814 0.79981 0.81027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.53 -31.52 9.94 25.60 0.25 -31.26 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 9 C 0.23 11.03 4.23 85.63 0.36 11.39 16 10 N -0.60 -23.60 2.46 -826.19 -2.03 -25.63 16 11 C 0.14 3.96 5.49 86.38 0.47 4.43 16 12 C -0.19 -4.29 5.95 -10.79 -0.06 -4.36 16 13 C -0.16 -2.44 9.18 30.59 0.28 -2.16 16 14 C -0.17 -2.75 10.25 30.59 0.31 -2.44 16 15 C 0.50 19.44 7.67 87.66 0.67 20.12 16 16 O -0.60 -29.90 15.56 -3.03 -0.05 -29.95 16 17 C -0.12 -2.91 4.25 29.85 0.13 -2.79 16 18 C -0.10 -2.46 4.87 30.59 0.15 -2.31 16 19 C 0.06 1.11 4.75 71.98 0.34 1.46 16 20 O -0.33 -7.45 10.15 -92.53 -0.94 -8.39 16 21 C 0.07 1.34 6.71 22.60 0.15 1.49 16 22 C -0.13 -2.13 10.13 22.56 0.23 -1.90 16 23 C -0.12 -1.52 10.11 22.35 0.23 -1.30 16 24 C 0.05 0.68 11.18 84.70 0.95 1.63 16 25 N -0.48 -9.41 10.35 -195.44 -2.02 -11.44 16 26 C 0.00 0.09 10.22 84.81 0.87 0.95 16 27 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 28 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 29 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 30 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.10 2.20 6.17 -2.39 -0.01 2.18 16 32 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.12 1.25 7.87 -2.39 -0.02 1.23 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 2.26 7.40 -2.39 -0.02 2.24 16 38 H 0.13 2.21 6.84 -2.39 -0.02 2.19 16 39 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.05 1.68 8.10 -2.38 -0.02 1.66 16 41 H 0.08 1.21 7.68 -2.39 -0.02 1.19 16 42 H 0.09 1.17 7.68 -2.39 -0.02 1.15 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 46 H 0.17 2.48 6.32 -2.91 -0.02 2.47 16 Total: -1.00 -82.65 382.43 3.85 -78.80 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.91 Total: 15.44 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.79 Total: -5.95 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.75 Total: -96.85 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.99 Total: -38.34 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -82.65 3.85 -78.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.686 kcal (2) G-P(sol) polarization free energy of solvation -82.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds