Wall clock time and date at job start Tue Mar 31 2020 11:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48500 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47621 * 300.00244 * 3 2 1 6 6 H 1.48500 * 109.47195 * 60.00105 * 3 2 1 7 7 C 1.37876 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00030 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99569 * 270.00070 * 10 9 7 12 12 C 1.50700 * 109.47288 * 269.99827 * 11 10 9 13 13 C 1.38669 * 120.41877 * 89.99823 * 12 11 10 14 14 C 1.38631 * 118.42194 * 180.02562 * 13 12 11 15 15 C 1.38224 * 119.15727 * 0.02562 * 14 13 12 16 16 N 1.31858 * 120.76903 * 359.97438 * 15 14 13 17 17 C 1.31884 * 121.72044 * 359.71315 * 16 15 14 18 18 C 1.34768 * 120.00410 * 90.00196 * 10 9 7 19 19 O 1.21278 * 120.00263 * 180.02562 * 18 10 9 20 20 C 1.50703 * 119.99653 * 359.97438 * 18 10 9 21 21 C 1.53001 * 109.46788 * 180.02562 * 20 18 10 22 22 H 1.09000 * 109.49561 * 55.02778 * 21 20 18 23 23 C 1.53098 * 109.47861 * 175.05914 * 21 20 18 24 24 C 1.53180 * 109.16075 * 177.59094 * 23 21 20 25 25 C 1.53175 * 109.03606 * 303.01560 * 24 23 21 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 24 23 27 27 O 1.42905 * 109.48128 * 294.99675 * 21 20 18 28 28 H 0.97003 * 119.99842 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46972 * 60.00157 * 9 7 2 30 30 H 1.09002 * 109.47127 * 300.00558 * 9 7 2 31 31 H 1.08996 * 109.47125 * 30.00243 * 11 10 9 32 32 H 1.09005 * 109.46830 * 150.00099 * 11 10 9 33 33 H 1.07995 * 120.78783 * 0.03187 * 13 12 11 34 34 H 1.07995 * 120.42283 * 180.02562 * 14 13 12 35 35 H 1.08004 * 119.61798 * 179.97438 * 15 14 13 36 36 H 1.08000 * 119.61542 * 180.31454 * 17 16 15 37 37 H 1.08991 * 109.47043 * 60.00334 * 20 18 10 38 38 H 1.08996 * 109.47353 * 300.00081 * 20 18 10 39 39 H 1.08996 * 109.52270 * 57.68339 * 23 21 20 40 40 H 1.08995 * 109.57012 * 297.52187 * 23 21 20 41 41 H 1.09005 * 109.54069 * 183.15152 * 24 23 21 42 42 H 1.08999 * 109.54515 * 62.88494 * 24 23 21 43 43 H 1.09004 * 109.52714 * 297.07587 * 25 24 23 44 44 H 1.09001 * 109.57654 * 176.92317 * 25 24 23 45 45 H 1.08997 * 109.48111 * 182.40965 * 26 25 24 46 46 H 1.08999 * 109.49220 * 62.37875 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2694 12 6 1.7623 -5.2836 -1.7045 13 6 0.6622 -5.0155 -2.5050 14 6 -0.1537 -6.0715 -2.8804 15 6 0.1541 -7.3474 -2.4469 16 7 1.2088 -7.5654 -1.6862 17 6 2.0102 -6.5859 -1.3149 18 6 2.6409 -4.1249 1.1665 19 8 3.4294 -5.0464 1.1665 20 6 2.1517 -3.5518 2.4717 21 6 2.7982 -4.3073 3.6345 22 1 3.8827 -4.2801 3.5279 23 6 2.3985 -3.6476 4.9570 24 6 3.0000 -4.4448 6.1185 25 6 2.5242 -5.8979 6.0266 26 6 2.9190 -6.4706 4.6628 27 8 2.3525 -5.6651 3.6273 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.6868 -3.3877 -2.0290 32 1 3.6885 -4.5594 -1.1391 33 1 0.4462 -4.0080 -2.8284 34 1 -1.0187 -5.8996 -3.5036 35 1 -0.4767 -8.1756 -2.7346 36 1 2.8677 -6.8037 -0.6954 37 1 1.0681 -3.6535 2.5296 38 1 2.4213 -2.4973 2.5293 39 1 1.3122 -3.6382 5.0457 40 1 2.7751 -2.6251 4.9835 41 1 2.6734 -4.0133 7.0647 42 1 4.0879 -4.4129 6.0580 43 1 1.4403 -5.9339 6.1369 44 1 2.9904 -6.4856 6.8173 45 1 2.5454 -7.4908 4.5751 46 1 4.0050 -6.4719 4.5695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087204277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:26 Heat of formation + Delta-G solvation = -63.684827 kcal Electronic energy + Delta-G solvation = -27390.014748 eV Core-core repulsion = 23664.907535 eV Total energy + Delta-G solvation = -3725.107212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.03159 -39.43262 -38.35374 -35.17356 -33.41026 -33.17579 -32.44407 -32.01061 -31.23438 -28.27059 -27.44426 -25.75347 -24.14542 -23.37445 -22.85922 -22.47099 -21.41732 -20.07918 -18.29693 -16.93429 -16.62669 -16.35054 -16.09312 -15.92597 -15.50887 -15.36654 -15.02501 -14.53570 -14.35243 -14.24107 -13.98816 -13.57277 -13.19624 -12.96818 -12.74530 -12.57076 -12.46646 -12.30033 -12.02072 -11.77849 -11.52656 -11.41938 -11.22271 -11.04364 -10.95422 -10.90653 -10.83654 -10.54220 -10.24018 -10.06809 -9.82431 -9.51841 -9.20307 -9.15298 -9.03430 -8.69409 -8.54867 -7.75063 -6.23844 -4.31869 1.38047 1.58748 3.17050 3.26479 3.29750 3.48235 3.83838 4.09664 4.24670 4.31140 4.73905 4.86339 4.89291 4.95243 5.06843 5.09327 5.11220 5.24387 5.29803 5.37578 5.38523 5.48349 5.52325 5.61737 5.70001 5.81298 5.84349 5.92226 5.95420 6.03796 6.04377 6.13753 6.15924 6.18915 6.22048 6.38632 6.39952 6.48344 6.64079 6.73180 7.01643 7.14952 7.49614 7.59785 7.71197 8.00341 8.25853 8.32013 8.75363 9.05371 9.36961 10.82591 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.006996 B = 0.006175 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.101725 B = 4533.448689 C = 7896.423493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.595 5.595 11 C 0.162 3.838 12 C -0.144 4.144 13 C -0.060 4.060 14 C -0.180 4.180 15 C 0.087 3.913 16 N -0.492 5.492 17 C 0.119 3.881 18 C 0.523 3.477 19 O -0.561 6.561 20 C -0.128 4.128 21 C 0.109 3.891 22 H 0.061 0.939 23 C -0.153 4.153 24 C -0.120 4.120 25 C -0.157 4.157 26 C 0.064 3.936 27 O -0.365 6.365 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -8.573 4.056 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.326 5.326 11 C 0.038 3.962 12 C -0.147 4.147 13 C -0.087 4.087 14 C -0.199 4.199 15 C -0.070 4.070 16 N -0.201 5.201 17 C -0.038 4.038 18 C 0.311 3.689 19 O -0.441 6.441 20 C -0.167 4.167 21 C 0.051 3.949 22 H 0.079 0.921 23 C -0.190 4.190 24 C -0.158 4.158 25 C -0.195 4.195 26 C -0.013 4.013 27 O -0.283 6.283 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.167 -9.823 4.191 10.898 hybrid contribution 0.083 2.163 -0.091 2.167 sum 2.251 -7.660 4.100 8.975 Atomic orbital electron populations 1.69934 1.06015 1.27233 1.49634 1.24942 0.94821 0.99267 0.94717 0.86486 0.80164 0.83312 0.77797 1.19630 1.20865 1.20817 1.21546 0.93675 0.90414 1.52092 0.91940 1.19428 0.87538 0.82524 0.98673 1.48225 1.45955 1.34669 1.03713 1.20089 0.95880 0.93104 0.87148 1.21456 0.98094 0.96905 0.98276 1.21623 0.92777 0.99708 0.94545 1.22084 1.01127 0.94105 1.02627 1.22684 0.94196 0.96028 0.94075 1.67707 1.04618 1.36304 1.11431 1.22840 0.97583 0.88059 0.95331 1.20347 0.80704 0.82194 0.85606 1.90578 1.35989 1.29798 1.87780 1.21689 1.02601 1.01277 0.91169 1.21812 0.98116 0.81995 0.92977 0.92057 1.22241 1.02008 0.99803 0.94978 1.21566 1.00478 0.95251 0.98491 1.22216 1.02049 0.96788 0.98397 1.22446 0.97631 0.94713 0.86548 1.88016 1.68620 1.20616 1.51073 0.92544 0.94815 0.94386 0.89411 0.89817 0.84623 0.85180 0.83390 0.82438 0.88687 0.86591 0.90970 0.90647 0.91770 0.91971 0.91260 0.91421 0.89494 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 13.29 55.43 0.74 -22.94 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -13.30 9.28 -34.44 -0.32 -13.62 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.42 4.97 -5.20 -0.03 5.39 16 10 N -0.60 -12.12 2.44 -176.43 -0.43 -12.56 16 11 C 0.16 2.92 5.56 -5.19 -0.03 2.89 16 12 C -0.14 -2.47 5.48 -104.48 -0.57 -3.04 16 13 C -0.06 -0.94 9.86 -39.28 -0.39 -1.33 16 14 C -0.18 -2.48 10.11 -39.44 -0.40 -2.87 16 15 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 16 N -0.49 -8.42 10.36 -13.25 -0.14 -8.56 16 17 C 0.12 2.10 10.86 -17.55 -0.19 1.90 16 18 C 0.52 10.70 7.55 -10.99 -0.08 10.62 16 19 O -0.56 -12.20 14.59 -8.84 -0.13 -12.33 16 20 C -0.13 -2.33 3.97 -27.88 -0.11 -2.44 16 21 C 0.11 1.77 2.19 -26.68 -0.06 1.71 16 22 H 0.06 1.04 7.96 -51.93 -0.41 0.62 16 23 C -0.15 -2.02 5.42 -26.59 -0.14 -2.17 16 24 C -0.12 -1.35 6.03 -26.55 -0.16 -1.51 16 25 C -0.16 -1.74 6.14 -26.59 -0.16 -1.90 16 26 C 0.06 0.86 6.84 37.20 0.25 1.11 16 27 O -0.36 -6.33 9.64 -49.63 -0.48 -6.80 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 0.91 6.44 -51.93 -0.33 0.57 16 31 H 0.09 1.52 8.03 -51.93 -0.42 1.11 16 32 H 0.08 1.49 7.37 -51.93 -0.38 1.11 16 33 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.16 2.85 7.64 -52.49 -0.40 2.45 16 37 H 0.09 1.75 7.40 -51.93 -0.38 1.37 16 38 H 0.12 2.12 8.00 -51.93 -0.42 1.71 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -29.23 378.40 -9.80 -39.03 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.36 Total: 6.31 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.68 Total: -2.62 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.17 Total: -44.05 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.61 Total: -19.14 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.23 -9.80 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087204277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.650 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds