Wall clock time and date at job start Tue Mar 31 2020 11:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48500 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47621 * 300.00244 * 3 2 1 6 6 H 1.48500 * 109.47195 * 60.00105 * 3 2 1 7 7 C 1.37876 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00030 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99569 * 270.00070 * 10 9 7 12 12 C 1.50700 * 109.47288 * 269.99827 * 11 10 9 13 13 C 1.38669 * 120.41877 * 89.99823 * 12 11 10 14 14 C 1.38631 * 118.42194 * 180.02562 * 13 12 11 15 15 C 1.38224 * 119.15727 * 0.02562 * 14 13 12 16 16 N 1.31858 * 120.76903 * 359.97438 * 15 14 13 17 17 C 1.31884 * 121.72044 * 359.71315 * 16 15 14 18 18 C 1.34768 * 120.00410 * 90.00196 * 10 9 7 19 19 O 1.21278 * 120.00263 * 180.02562 * 18 10 9 20 20 C 1.50703 * 119.99653 * 359.97438 * 18 10 9 21 21 C 1.53001 * 109.46788 * 180.02562 * 20 18 10 22 22 H 1.09000 * 109.49561 * 55.02778 * 21 20 18 23 23 C 1.53098 * 109.47861 * 175.05914 * 21 20 18 24 24 C 1.53180 * 109.16075 * 177.59094 * 23 21 20 25 25 C 1.53175 * 109.03606 * 303.01560 * 24 23 21 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 24 23 27 27 O 1.42905 * 109.48128 * 294.99675 * 21 20 18 28 28 H 0.97003 * 119.99842 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46972 * 60.00157 * 9 7 2 30 30 H 1.09002 * 109.47127 * 300.00558 * 9 7 2 31 31 H 1.08996 * 109.47125 * 30.00243 * 11 10 9 32 32 H 1.09005 * 109.46830 * 150.00099 * 11 10 9 33 33 H 1.07995 * 120.78783 * 0.03187 * 13 12 11 34 34 H 1.07995 * 120.42283 * 180.02562 * 14 13 12 35 35 H 1.08004 * 119.61798 * 179.97438 * 15 14 13 36 36 H 1.08000 * 119.61542 * 180.31454 * 17 16 15 37 37 H 1.08991 * 109.47043 * 60.00334 * 20 18 10 38 38 H 1.08996 * 109.47353 * 300.00081 * 20 18 10 39 39 H 1.08996 * 109.52270 * 57.68339 * 23 21 20 40 40 H 1.08995 * 109.57012 * 297.52187 * 23 21 20 41 41 H 1.09005 * 109.54069 * 183.15152 * 24 23 21 42 42 H 1.08999 * 109.54515 * 62.88494 * 24 23 21 43 43 H 1.09004 * 109.52714 * 297.07587 * 25 24 23 44 44 H 1.09001 * 109.57654 * 176.92317 * 25 24 23 45 45 H 1.08997 * 109.48111 * 182.40965 * 26 25 24 46 46 H 1.08999 * 109.49220 * 62.37875 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2694 12 6 1.7623 -5.2836 -1.7045 13 6 0.6622 -5.0155 -2.5050 14 6 -0.1537 -6.0715 -2.8804 15 6 0.1541 -7.3474 -2.4469 16 7 1.2088 -7.5654 -1.6862 17 6 2.0102 -6.5859 -1.3149 18 6 2.6409 -4.1249 1.1665 19 8 3.4294 -5.0464 1.1665 20 6 2.1517 -3.5518 2.4717 21 6 2.7982 -4.3073 3.6345 22 1 3.8827 -4.2801 3.5279 23 6 2.3985 -3.6476 4.9570 24 6 3.0000 -4.4448 6.1185 25 6 2.5242 -5.8979 6.0266 26 6 2.9190 -6.4706 4.6628 27 8 2.3525 -5.6651 3.6273 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.6868 -3.3877 -2.0290 32 1 3.6885 -4.5594 -1.1391 33 1 0.4462 -4.0080 -2.8284 34 1 -1.0187 -5.8996 -3.5036 35 1 -0.4767 -8.1756 -2.7346 36 1 2.8677 -6.8037 -0.6954 37 1 1.0681 -3.6535 2.5296 38 1 2.4213 -2.4973 2.5293 39 1 1.3122 -3.6382 5.0457 40 1 2.7751 -2.6251 4.9835 41 1 2.6734 -4.0133 7.0647 42 1 4.0879 -4.4129 6.0580 43 1 1.4403 -5.9339 6.1369 44 1 2.9904 -6.4856 6.8173 45 1 2.5454 -7.4908 4.5751 46 1 4.0050 -6.4719 4.5695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087204277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:25 Heat of formation + Delta-G solvation = -78.402535 kcal Electronic energy + Delta-G solvation = -27390.652955 eV Core-core repulsion = 23664.907535 eV Total energy + Delta-G solvation = -3725.745420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40882 -40.72611 -39.73395 -36.84009 -34.86848 -34.48660 -33.92151 -33.33772 -32.53616 -29.55768 -29.22834 -27.17133 -25.30446 -24.91578 -24.33525 -23.72316 -22.70082 -21.14429 -19.90697 -18.67593 -18.05291 -17.79738 -17.41339 -17.31002 -16.97755 -16.62049 -16.41805 -16.22218 -15.50393 -15.39839 -15.29942 -14.85537 -14.47990 -14.33943 -14.26546 -13.98954 -13.81916 -13.51773 -13.46692 -13.23943 -13.08031 -12.90688 -12.79994 -12.59531 -12.43151 -12.17894 -12.05797 -11.92741 -11.68487 -11.59375 -11.22226 -10.87101 -10.66617 -10.56134 -10.43607 -10.27169 -9.93480 -9.44967 -8.18677 -6.33269 0.13802 0.33715 1.41924 1.46290 1.55878 1.83629 2.30939 2.46308 2.90546 2.95994 3.12094 3.54033 3.66129 3.82884 3.90834 3.91408 3.96467 4.02486 4.09118 4.11593 4.22079 4.22735 4.33940 4.50403 4.51299 4.65366 4.70233 4.74100 4.77597 4.81038 4.87744 4.89948 4.93200 5.00253 5.09769 5.14310 5.17243 5.21980 5.26350 5.37397 5.41209 5.67649 5.78935 5.84327 6.07281 6.40978 6.58227 6.83315 7.01571 7.33681 7.45049 8.86989 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.006996 B = 0.006175 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.101725 B = 4533.448689 C = 7896.423493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.255 3.745 10 N -0.597 5.597 11 C 0.163 3.837 12 C -0.155 4.155 13 C -0.069 4.069 14 C -0.167 4.167 15 C 0.087 3.913 16 N -0.513 5.513 17 C 0.105 3.895 18 C 0.515 3.485 19 O -0.577 6.577 20 C -0.124 4.124 21 C 0.114 3.886 22 H 0.050 0.950 23 C -0.149 4.149 24 C -0.118 4.118 25 C -0.150 4.150 26 C 0.054 3.946 27 O -0.396 6.396 28 H 0.267 0.733 29 H 0.023 0.977 30 H 0.025 0.975 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.168 0.832 35 H 0.186 0.814 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -8.598 4.443 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.135 3.865 10 N -0.327 5.327 11 C 0.039 3.961 12 C -0.159 4.159 13 C -0.096 4.096 14 C -0.187 4.187 15 C -0.070 4.070 16 N -0.222 5.222 17 C -0.052 4.052 18 C 0.305 3.695 19 O -0.458 6.458 20 C -0.163 4.163 21 C 0.055 3.945 22 H 0.068 0.932 23 C -0.187 4.187 24 C -0.156 4.156 25 C -0.187 4.187 26 C -0.022 4.022 27 O -0.315 6.315 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.185 0.815 35 H 0.203 0.797 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.683 -9.858 4.580 11.000 hybrid contribution 0.198 2.073 -0.286 2.102 sum 1.881 -7.786 4.294 9.088 Atomic orbital electron populations 1.70019 1.07214 1.28082 1.50489 1.25600 0.95469 1.02114 0.94368 0.85555 0.78926 0.79679 0.77800 1.19503 1.20601 1.20379 1.21687 0.93359 0.91358 1.51775 0.92679 1.19068 0.87421 0.82695 0.97347 1.48223 1.45543 1.34221 1.04722 1.20132 0.96085 0.93587 0.86275 1.21302 0.98852 0.96215 0.99493 1.21805 0.92643 1.00726 0.94406 1.22471 1.01342 0.93097 1.01755 1.23349 0.93396 0.97602 0.92633 1.67702 1.05654 1.36322 1.12496 1.22627 0.97871 0.88562 0.96107 1.20760 0.80471 0.82014 0.86275 1.90560 1.36707 1.30448 1.88059 1.21679 1.02257 1.01289 0.91106 1.21738 0.97083 0.82015 0.93615 0.93160 1.22209 1.01980 1.00321 0.94148 1.21591 1.00685 0.94999 0.98292 1.22172 1.02133 0.96973 0.97466 1.22689 0.97592 0.94827 0.87086 1.87957 1.69298 1.21245 1.53036 0.92353 0.95927 0.95741 0.89058 0.90145 0.84197 0.81462 0.79674 0.84066 0.89300 0.86970 0.91286 0.89895 0.89648 0.91473 0.91451 0.88792 0.88642 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.29 21.45 0.28 -48.64 16 2 C 0.03 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.95 40.30 29.54 68.60 2.03 42.33 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -27.09 9.28 25.60 0.24 -26.86 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.26 11.89 4.97 85.63 0.43 12.32 16 10 N -0.60 -25.11 2.44 -830.50 -2.03 -27.13 16 11 C 0.16 6.06 5.56 85.63 0.48 6.54 16 12 C -0.16 -5.41 5.48 -19.77 -0.11 -5.52 16 13 C -0.07 -2.12 9.86 22.47 0.22 -1.89 16 14 C -0.17 -4.20 10.11 22.36 0.23 -3.98 16 15 C 0.09 2.32 11.18 84.69 0.95 3.26 16 16 N -0.51 -17.31 10.36 -195.84 -2.03 -19.34 16 17 C 0.10 3.78 10.86 84.67 0.92 4.70 16 18 C 0.52 21.87 7.55 87.66 0.66 22.53 16 19 O -0.58 -26.04 14.59 10.74 0.16 -25.88 16 20 C -0.12 -4.67 3.97 29.85 0.12 -4.55 16 21 C 0.11 3.75 2.19 30.63 0.07 3.81 16 22 H 0.05 1.74 7.96 -2.39 -0.02 1.72 16 23 C -0.15 -3.84 5.42 30.69 0.17 -3.67 16 24 C -0.12 -2.41 6.03 30.71 0.19 -2.23 16 25 C -0.15 -3.04 6.14 30.68 0.19 -2.85 16 26 C 0.05 1.43 6.84 72.01 0.49 1.92 16 27 O -0.40 -13.94 9.64 -135.22 -1.30 -15.25 16 28 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 30 H 0.02 1.21 6.44 -2.39 -0.02 1.19 16 31 H 0.09 3.26 8.03 -2.39 -0.02 3.24 16 32 H 0.08 3.00 7.37 -2.38 -0.02 2.98 16 33 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.14 5.43 7.64 -2.91 -0.02 5.41 16 37 H 0.09 3.42 7.40 -2.39 -0.02 3.40 16 38 H 0.11 4.25 8.00 -2.39 -0.02 4.23 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -62.88 378.40 3.75 -59.13 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.95 Total: 29.50 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.69 Total: 5.27 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.77 Total: -95.11 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.15 Total: -41.13 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -62.88 3.75 -59.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087204277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.273 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds