Wall clock time and date at job start Tue Mar 31 2020 12:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47438 * 300.00286 * 3 2 1 6 6 H 1.48503 * 109.47246 * 60.00115 * 3 2 1 7 7 C 1.37871 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00226 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99884 * 270.00635 * 10 9 7 12 12 C 1.50703 * 109.46871 * 269.99501 * 11 10 9 13 13 C 1.38230 * 119.61795 * 95.00341 * 12 11 10 14 14 C 1.38618 * 119.16155 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.42261 * 0.02562 * 14 13 12 16 16 C 1.38184 * 119.16314 * 359.97438 * 15 14 13 17 17 N 1.31854 * 119.61983 * 274.72784 * 12 11 10 18 18 C 1.34777 * 119.99858 * 89.99981 * 10 9 7 19 19 O 1.21279 * 120.00166 * 180.02562 * 18 10 9 20 20 C 1.50706 * 119.99762 * 0.02562 * 18 10 9 21 21 C 1.53002 * 109.46925 * 179.97438 * 20 18 10 22 22 H 1.09004 * 109.47621 * 304.97610 * 21 20 18 23 23 C 1.53087 * 109.48319 * 184.94583 * 21 20 18 24 24 C 1.53171 * 109.16678 * 182.40893 * 23 21 20 25 25 C 1.53179 * 109.03942 * 56.97324 * 24 23 21 26 26 C 1.53093 * 109.16496 * 303.02465 * 25 24 23 27 27 O 1.42900 * 109.48230 * 64.99538 * 21 20 18 28 28 H 0.97005 * 120.00087 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46869 * 60.00158 * 9 7 2 30 30 H 1.08997 * 109.47330 * 300.00555 * 9 7 2 31 31 H 1.09000 * 109.47710 * 29.99936 * 11 10 9 32 32 H 1.09000 * 109.46883 * 149.99979 * 11 10 9 33 33 H 1.07997 * 120.41631 * 359.95989 * 13 12 11 34 34 H 1.07998 * 120.79571 * 179.97438 * 14 13 12 35 35 H 1.07998 * 120.42003 * 180.02562 * 15 14 13 36 36 H 1.08002 * 119.61767 * 180.02562 * 16 15 14 37 37 H 1.09000 * 109.47318 * 299.99141 * 20 18 10 38 38 H 1.09000 * 109.47161 * 59.99772 * 20 18 10 39 39 H 1.09007 * 109.51837 * 302.31440 * 23 21 20 40 40 H 1.08995 * 109.52407 * 62.49410 * 23 21 20 41 41 H 1.09002 * 109.54492 * 297.11183 * 24 23 21 42 42 H 1.08999 * 109.54471 * 176.84108 * 24 23 21 43 43 H 1.08992 * 109.52392 * 183.11723 * 25 24 23 44 44 H 1.09000 * 109.57090 * 62.95950 * 25 24 23 45 45 H 1.08996 * 109.47676 * 297.62229 * 26 25 24 46 46 H 1.08994 * 109.49111 * 177.59246 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1693 -1.2692 12 6 1.7624 -5.2836 -1.7043 13 6 0.7318 -5.0155 -2.5857 14 6 -0.1053 -6.0476 -2.9800 15 6 0.1260 -7.3164 -2.4704 16 6 1.1762 -7.5086 -1.5932 17 7 1.9560 -6.5039 -1.2442 18 6 2.6409 -4.1249 1.1667 19 8 3.4294 -5.0464 1.1667 20 6 2.1508 -3.5524 2.4718 21 6 2.7964 -4.3085 3.6348 22 1 2.6009 -5.3755 3.5278 23 6 2.2068 -3.8112 4.9571 24 6 2.9006 -4.5292 6.1187 25 6 4.4101 -4.2852 6.0269 26 6 4.9146 -4.7643 4.6632 27 8 4.2070 -4.0795 3.6275 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.6870 -3.3877 -2.0289 32 1 3.6886 -4.5593 -1.1388 33 1 0.5807 -4.0146 -2.9621 34 1 -0.9190 -5.8677 -3.6670 35 1 -0.5062 -8.1441 -2.7563 36 1 1.3632 -8.4938 -1.1922 37 1 2.4197 -2.4977 2.5298 38 1 1.0671 -3.6548 2.5293 39 1 2.3664 -2.7365 5.0458 40 1 1.1384 -4.0249 4.9828 41 1 2.7000 -5.5989 6.0582 42 1 2.5252 -4.1394 7.0648 43 1 4.9172 -4.8380 6.8175 44 1 4.6152 -3.2204 6.1376 45 1 4.7468 -5.8372 4.5700 46 1 5.9805 -4.5541 4.5754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087298464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:12 Heat of formation + Delta-G solvation = -59.149265 kcal Electronic energy + Delta-G solvation = -27331.809068 eV Core-core repulsion = 23606.898532 eV Total energy + Delta-G solvation = -3724.910536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.01288 -39.37209 -38.22465 -34.97541 -33.35750 -32.95791 -32.36360 -32.13609 -31.26753 -28.30070 -27.41470 -25.83114 -24.10409 -23.32314 -22.81917 -22.44577 -21.38609 -20.02598 -18.24075 -16.84555 -16.47872 -16.13095 -16.01831 -15.92133 -15.48288 -15.33401 -15.13452 -14.46145 -14.36776 -14.25105 -13.94232 -13.48979 -13.21563 -12.96805 -12.73322 -12.51399 -12.37612 -12.11786 -12.00626 -11.64086 -11.52515 -11.27438 -11.20944 -11.00461 -10.91046 -10.85412 -10.75039 -10.49339 -10.16374 -9.99417 -9.74158 -9.62104 -9.09062 -9.08017 -8.95164 -8.66106 -8.50146 -7.64628 -6.17098 -4.24061 1.33582 1.55283 3.23049 3.32010 3.37436 3.62817 3.84021 4.15259 4.31450 4.38568 4.65644 4.90418 4.93585 4.99301 5.01134 5.06272 5.15414 5.16682 5.28410 5.39959 5.43497 5.53290 5.60359 5.67638 5.81402 5.83817 5.86438 5.93516 5.95543 6.02876 6.05488 6.11147 6.16507 6.27516 6.31173 6.37634 6.39795 6.47322 6.61610 6.79558 6.95956 7.19708 7.59462 7.67536 7.79316 8.08311 8.34555 8.45380 8.84392 9.21219 9.44905 10.89325 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007397 B = 0.005761 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.528843 B = 4859.355001 C = 7866.026057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.597 5.597 11 C 0.169 3.831 12 C 0.122 3.878 13 C -0.157 4.157 14 C -0.081 4.081 15 C -0.184 4.184 16 C 0.091 3.909 17 N -0.459 5.459 18 C 0.521 3.479 19 O -0.543 6.543 20 C -0.129 4.129 21 C 0.111 3.889 22 H 0.059 0.941 23 C -0.153 4.153 24 C -0.120 4.120 25 C -0.157 4.157 26 C 0.064 3.936 27 O -0.361 6.361 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -10.508 3.415 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.119 3.881 10 N -0.329 5.329 11 C 0.044 3.956 12 C -0.017 4.017 13 C -0.177 4.177 14 C -0.107 4.107 15 C -0.204 4.204 16 C -0.066 4.066 17 N -0.168 5.168 18 C 0.309 3.691 19 O -0.421 6.421 20 C -0.168 4.168 21 C 0.052 3.948 22 H 0.077 0.923 23 C -0.191 4.191 24 C -0.157 4.157 25 C -0.195 4.195 26 C -0.014 4.014 27 O -0.280 6.280 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.513 -10.873 3.858 11.636 hybrid contribution -0.764 1.074 -0.424 1.384 sum 0.749 -9.799 3.434 10.411 Atomic orbital electron populations 1.69936 1.05999 1.27118 1.50087 1.24932 0.94816 0.99247 0.94791 0.86487 0.80317 0.83309 0.77679 1.19552 1.20939 1.20870 1.21578 0.93795 0.90399 1.51532 0.91846 1.19413 0.87511 0.82700 0.98479 1.48133 1.46301 1.34823 1.03603 1.20080 0.96345 0.91739 0.87438 1.21965 0.94842 0.92807 0.92062 1.22125 0.95942 1.00522 0.99117 1.21535 0.98256 0.92776 0.98145 1.22077 1.00102 0.97960 1.00243 1.22757 0.91354 0.98061 0.94461 1.67659 1.27493 0.99682 1.21949 1.20304 0.81022 0.82363 0.85421 1.90634 1.34700 1.29320 1.87476 1.21677 1.00803 1.02978 0.91357 1.21780 0.81502 0.98557 0.92927 0.92337 1.22246 1.00205 1.01541 0.95067 1.21560 0.95257 1.00464 0.98454 1.22218 0.96467 1.02376 0.98408 1.22445 0.96478 0.95879 0.86568 1.88041 1.18451 1.70538 1.50940 0.92658 0.94862 0.94557 0.88935 0.89232 0.84492 0.85193 0.85417 0.83384 0.87126 0.88406 0.90741 0.90953 0.92067 0.91805 0.91470 0.91162 0.93620 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 13.29 55.43 0.74 -23.44 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -13.70 9.28 -34.44 -0.32 -14.02 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.24 5.59 4.97 -5.19 -0.03 5.57 16 10 N -0.60 -12.86 2.44 -176.43 -0.43 -13.29 16 11 C 0.17 3.29 5.72 -5.19 -0.03 3.26 16 12 C 0.12 2.22 6.36 -82.58 -0.53 1.69 16 13 C -0.16 -2.46 9.72 -39.44 -0.38 -2.84 16 14 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 15 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.46 10.27 -9.47 -0.10 -8.56 16 18 C 0.52 11.37 7.55 -10.98 -0.08 11.29 16 19 O -0.54 -12.89 15.00 -8.86 -0.13 -13.02 16 20 C -0.13 -2.46 3.96 -27.88 -0.11 -2.57 16 21 C 0.11 1.88 2.19 -26.69 -0.06 1.83 16 22 H 0.06 1.03 7.96 -51.93 -0.41 0.62 16 23 C -0.15 -2.10 5.42 -26.60 -0.14 -2.25 16 24 C -0.12 -1.39 6.03 -26.55 -0.16 -1.55 16 25 C -0.16 -1.83 6.14 -26.59 -0.16 -2.00 16 26 C 0.06 0.90 6.84 37.21 0.25 1.15 16 27 O -0.36 -6.66 9.64 -49.65 -0.48 -7.14 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 31 H 0.09 1.68 7.97 -51.93 -0.41 1.27 16 32 H 0.09 1.83 7.42 -51.93 -0.39 1.44 16 33 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.11 2.27 8.00 -51.93 -0.42 1.86 16 38 H 0.10 1.74 7.40 -51.93 -0.38 1.36 16 39 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -31.15 379.35 -9.93 -41.08 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.38 Total: 5.11 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.84 Total: -1.89 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.21 Total: -45.29 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.61 Total: -20.16 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.15 -9.93 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.066 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds