Wall clock time and date at job start Tue Mar 31 2020 12:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47438 * 300.00286 * 3 2 1 6 6 H 1.48503 * 109.47246 * 60.00115 * 3 2 1 7 7 C 1.37871 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00226 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99884 * 270.00635 * 10 9 7 12 12 C 1.50703 * 109.46871 * 269.99501 * 11 10 9 13 13 C 1.38230 * 119.61795 * 95.00341 * 12 11 10 14 14 C 1.38618 * 119.16155 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.42261 * 0.02562 * 14 13 12 16 16 C 1.38184 * 119.16314 * 359.97438 * 15 14 13 17 17 N 1.31854 * 119.61983 * 274.72784 * 12 11 10 18 18 C 1.34777 * 119.99858 * 89.99981 * 10 9 7 19 19 O 1.21279 * 120.00166 * 180.02562 * 18 10 9 20 20 C 1.50706 * 119.99762 * 0.02562 * 18 10 9 21 21 C 1.53002 * 109.46925 * 179.97438 * 20 18 10 22 22 H 1.09004 * 109.47621 * 304.97610 * 21 20 18 23 23 C 1.53087 * 109.48319 * 184.94583 * 21 20 18 24 24 C 1.53171 * 109.16678 * 182.40893 * 23 21 20 25 25 C 1.53179 * 109.03942 * 56.97324 * 24 23 21 26 26 C 1.53093 * 109.16496 * 303.02465 * 25 24 23 27 27 O 1.42900 * 109.48230 * 64.99538 * 21 20 18 28 28 H 0.97005 * 120.00087 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46869 * 60.00158 * 9 7 2 30 30 H 1.08997 * 109.47330 * 300.00555 * 9 7 2 31 31 H 1.09000 * 109.47710 * 29.99936 * 11 10 9 32 32 H 1.09000 * 109.46883 * 149.99979 * 11 10 9 33 33 H 1.07997 * 120.41631 * 359.95989 * 13 12 11 34 34 H 1.07998 * 120.79571 * 179.97438 * 14 13 12 35 35 H 1.07998 * 120.42003 * 180.02562 * 15 14 13 36 36 H 1.08002 * 119.61767 * 180.02562 * 16 15 14 37 37 H 1.09000 * 109.47318 * 299.99141 * 20 18 10 38 38 H 1.09000 * 109.47161 * 59.99772 * 20 18 10 39 39 H 1.09007 * 109.51837 * 302.31440 * 23 21 20 40 40 H 1.08995 * 109.52407 * 62.49410 * 23 21 20 41 41 H 1.09002 * 109.54492 * 297.11183 * 24 23 21 42 42 H 1.08999 * 109.54471 * 176.84108 * 24 23 21 43 43 H 1.08992 * 109.52392 * 183.11723 * 25 24 23 44 44 H 1.09000 * 109.57090 * 62.95950 * 25 24 23 45 45 H 1.08996 * 109.47676 * 297.62229 * 26 25 24 46 46 H 1.08994 * 109.49111 * 177.59246 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1693 -1.2692 12 6 1.7624 -5.2836 -1.7043 13 6 0.7318 -5.0155 -2.5857 14 6 -0.1053 -6.0476 -2.9800 15 6 0.1260 -7.3164 -2.4704 16 6 1.1762 -7.5086 -1.5932 17 7 1.9560 -6.5039 -1.2442 18 6 2.6409 -4.1249 1.1667 19 8 3.4294 -5.0464 1.1667 20 6 2.1508 -3.5524 2.4718 21 6 2.7964 -4.3085 3.6348 22 1 2.6009 -5.3755 3.5278 23 6 2.2068 -3.8112 4.9571 24 6 2.9006 -4.5292 6.1187 25 6 4.4101 -4.2852 6.0269 26 6 4.9146 -4.7643 4.6632 27 8 4.2070 -4.0795 3.6275 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.6870 -3.3877 -2.0289 32 1 3.6886 -4.5593 -1.1388 33 1 0.5807 -4.0146 -2.9621 34 1 -0.9190 -5.8677 -3.6670 35 1 -0.5062 -8.1441 -2.7563 36 1 1.3632 -8.4938 -1.1922 37 1 2.4197 -2.4977 2.5298 38 1 1.0671 -3.6548 2.5293 39 1 2.3664 -2.7365 5.0458 40 1 1.1384 -4.0249 4.9828 41 1 2.7000 -5.5989 6.0582 42 1 2.5252 -4.1394 7.0648 43 1 4.9172 -4.8380 6.8175 44 1 4.6152 -3.2204 6.1376 45 1 4.7468 -5.8372 4.5700 46 1 5.9805 -4.5541 4.5754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087298464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:11 Heat of formation + Delta-G solvation = -76.175014 kcal Electronic energy + Delta-G solvation = -27332.547360 eV Core-core repulsion = 23606.898532 eV Total energy + Delta-G solvation = -3725.648828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36273 -40.70101 -39.68703 -36.74149 -34.72899 -34.48679 -33.85885 -33.32938 -32.61348 -29.64756 -29.22758 -27.30508 -25.30600 -24.87358 -24.25524 -23.71565 -22.68090 -21.13911 -19.91597 -18.67948 -17.94341 -17.53130 -17.46409 -17.28080 -16.88474 -16.61394 -16.45810 -16.24277 -15.74502 -15.36909 -15.26547 -14.81818 -14.47913 -14.26146 -14.20739 -13.95482 -13.77561 -13.52253 -13.40863 -13.26392 -12.97551 -12.85489 -12.74204 -12.60345 -12.48218 -12.18240 -12.05404 -11.92090 -11.70085 -11.59411 -11.21612 -10.79458 -10.69783 -10.51641 -10.33285 -10.26163 -9.91340 -9.41840 -8.18775 -6.32588 0.15765 0.42640 1.40563 1.44511 1.55163 1.89931 2.30600 2.45932 2.90915 3.02749 3.11293 3.42257 3.66860 3.82141 3.87948 3.96394 4.01535 4.04377 4.16929 4.22462 4.26001 4.28092 4.35144 4.53347 4.54681 4.57896 4.63307 4.72491 4.80021 4.85711 4.87958 4.91186 4.93673 5.01212 5.09567 5.14144 5.19032 5.23330 5.25725 5.30352 5.41878 5.68071 5.83033 5.86988 6.08392 6.42808 6.61137 6.84523 7.16710 7.35682 7.50529 8.86682 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007397 B = 0.005761 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.528843 B = 4859.355001 C = 7866.026057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.048 0.952 9 C 0.257 3.743 10 N -0.598 5.598 11 C 0.169 3.831 12 C 0.096 3.904 13 C -0.167 4.167 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.500 5.500 18 C 0.513 3.487 19 O -0.567 6.567 20 C -0.124 4.124 21 C 0.115 3.885 22 H 0.048 0.952 23 C -0.148 4.148 24 C -0.117 4.117 25 C -0.150 4.150 26 C 0.054 3.946 27 O -0.397 6.397 28 H 0.268 0.732 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -11.248 3.877 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.067 0.933 9 C 0.136 3.864 10 N -0.329 5.329 11 C 0.045 3.955 12 C -0.042 4.042 13 C -0.187 4.187 14 C -0.103 4.103 15 C -0.185 4.185 16 C -0.080 4.080 17 N -0.210 5.210 18 C 0.302 3.698 19 O -0.446 6.446 20 C -0.163 4.163 21 C 0.057 3.943 22 H 0.066 0.934 23 C -0.186 4.186 24 C -0.155 4.155 25 C -0.188 4.188 26 C -0.023 4.023 27 O -0.317 6.317 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.339 -11.614 4.313 12.394 hybrid contribution -0.398 1.195 -0.643 1.414 sum -0.059 -10.419 3.671 11.047 Atomic orbital electron populations 1.70005 1.07007 1.28061 1.50564 1.25558 0.95527 1.01951 0.94362 0.85588 0.78779 0.79825 0.77975 1.20016 1.20157 1.20256 1.21674 0.93153 0.91653 1.51713 0.93340 1.19063 0.87318 0.82558 0.97419 1.48149 1.45840 1.34389 1.04554 1.20072 0.96055 0.92697 0.86692 1.21620 0.95978 0.92467 0.94096 1.22199 0.95969 1.01586 0.98951 1.21975 0.98171 0.92194 0.97928 1.22516 0.99017 0.98932 0.98003 1.23274 0.91636 0.98124 0.94987 1.67541 1.29492 1.00493 1.23458 1.20789 0.80687 0.82112 0.86235 1.90603 1.35749 1.30402 1.87868 1.21678 1.01589 1.01945 0.91116 1.21727 0.81361 0.97561 0.93669 0.93363 1.22213 1.01078 1.01271 0.94051 1.21587 0.94896 1.00705 0.98286 1.22175 0.96786 1.02443 0.97384 1.22697 0.96708 0.95696 0.87152 1.87978 1.19210 1.71427 1.53074 0.92294 0.95758 0.95475 0.88561 0.91124 0.84447 0.81629 0.81101 0.81069 0.88878 0.87413 0.91408 0.89612 0.91375 0.89497 0.88680 0.91535 0.93619 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 13.29 21.45 0.28 -49.50 16 2 C 0.03 1.39 5.46 84.65 0.46 1.85 16 3 Si 0.95 42.11 29.54 68.60 2.03 44.13 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.54 -28.61 9.28 25.60 0.24 -28.37 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.26 12.48 4.97 85.63 0.43 12.90 16 10 N -0.60 -27.07 2.44 -830.49 -2.03 -29.09 16 11 C 0.17 6.98 5.72 85.63 0.49 7.47 16 12 C 0.10 3.60 6.36 42.55 0.27 3.87 16 13 C -0.17 -5.18 9.72 22.36 0.22 -4.97 16 14 C -0.08 -1.83 10.18 22.46 0.23 -1.60 16 15 C -0.17 -3.63 10.11 22.36 0.23 -3.40 16 16 C 0.08 2.17 11.18 84.67 0.95 3.12 16 17 N -0.50 -18.75 10.27 -183.88 -1.89 -20.64 16 18 C 0.51 23.50 7.55 87.66 0.66 24.16 16 19 O -0.57 -28.22 15.00 10.77 0.16 -28.06 16 20 C -0.12 -4.93 3.96 29.85 0.12 -4.81 16 21 C 0.11 4.00 2.19 30.62 0.07 4.07 16 22 H 0.05 1.75 7.96 -2.38 -0.02 1.74 16 23 C -0.15 -3.97 5.42 30.68 0.17 -3.80 16 24 C -0.12 -2.48 6.03 30.71 0.19 -2.29 16 25 C -0.15 -3.24 6.14 30.69 0.19 -3.05 16 26 C 0.05 1.51 6.84 72.01 0.49 2.00 16 27 O -0.40 -15.06 9.64 -135.19 -1.30 -16.36 16 28 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 29 H 0.02 1.22 8.07 -2.38 -0.02 1.20 16 30 H 0.03 1.36 6.44 -2.39 -0.02 1.35 16 31 H 0.10 3.74 7.97 -2.39 -0.02 3.72 16 32 H 0.07 3.11 7.42 -2.39 -0.02 3.10 16 33 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.09 4.02 8.00 -2.39 -0.02 4.01 16 38 H 0.11 3.97 7.40 -2.39 -0.02 3.95 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -69.09 379.35 3.59 -65.50 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.95 Total: 26.89 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.38 Total: 7.14 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.63 Total: -99.24 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.14 Total: -44.42 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -69.09 3.59 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.677 kcal (2) G-P(sol) polarization free energy of solvation -69.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds