Wall clock time and date at job start Tue Mar 31 2020 11:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00254 * 2 1 4 4 H 1.48495 * 109.47355 * 270.00163 * 3 2 1 5 5 H 1.48494 * 109.47286 * 30.00544 * 3 2 1 6 6 H 1.48507 * 109.47036 * 150.00326 * 3 2 1 7 7 C 1.37877 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 184.83507 * 7 2 1 9 9 C 1.50703 * 120.00284 * 4.82278 * 7 2 1 10 10 N 1.46506 * 109.46608 * 54.31890 * 9 7 2 11 11 C 1.46496 * 120.00014 * 72.72040 * 10 9 7 12 12 C 1.50705 * 109.46919 * 94.72106 * 11 10 9 13 13 C 1.38666 * 120.42260 * 274.86269 * 12 11 10 14 14 C 1.38631 * 118.42296 * 179.78162 * 13 12 11 15 15 C 1.38230 * 119.15666 * 0.51668 * 14 13 12 16 16 N 1.31857 * 120.76511 * 359.72404 * 15 14 13 17 17 C 1.31884 * 121.72202 * 0.02562 * 16 15 14 18 18 C 1.34780 * 119.99645 * 252.71909 * 10 9 7 19 19 O 1.21276 * 119.99364 * 180.02562 * 18 10 9 20 20 C 1.50701 * 120.00096 * 0.02562 * 18 10 9 21 21 C 1.52996 * 109.46918 * 180.02562 * 20 18 10 22 22 C 1.53187 * 109.54325 * 294.55344 * 21 20 18 23 23 C 1.53086 * 109.16520 * 183.15317 * 22 21 20 24 24 O 1.42906 * 109.41544 * 57.60920 * 23 22 21 25 25 C 1.42904 * 114.09776 * 298.84182 * 24 23 22 26 26 C 1.53095 * 109.41459 * 61.15602 * 25 24 23 27 27 H 0.96999 * 119.99326 * 354.99678 * 1 2 3 28 28 H 1.09000 * 109.47043 * 174.31422 * 9 7 2 29 29 H 1.08996 * 109.47173 * 294.32159 * 9 7 2 30 30 H 1.08995 * 109.47448 * 214.71928 * 11 10 9 31 31 H 1.09002 * 109.47352 * 334.72666 * 11 10 9 32 32 H 1.08007 * 120.78932 * 0.02562 * 13 12 11 33 33 H 1.07998 * 120.41863 * 180.22005 * 14 13 12 34 34 H 1.08000 * 119.61133 * 179.74665 * 15 14 13 35 35 H 1.08001 * 119.60960 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.46580 * 300.00066 * 20 18 10 37 37 H 1.08995 * 109.46850 * 59.99770 * 20 18 10 38 38 H 1.08996 * 109.54717 * 54.81954 * 21 20 18 39 39 H 1.08996 * 109.51802 * 303.06413 * 22 21 20 40 40 H 1.09005 * 109.51735 * 63.24474 * 22 21 20 41 41 H 1.09003 * 109.48075 * 297.62669 * 23 22 21 42 42 H 1.08994 * 109.48081 * 177.58821 * 23 22 21 43 43 H 1.08998 * 109.48399 * 301.17503 * 25 24 23 44 44 H 1.09000 * 109.49425 * 181.14198 * 25 24 23 45 45 H 1.08998 * 109.52311 * 182.48824 * 26 25 24 46 46 H 1.09006 * 109.52318 * 62.29934 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0816 -1.1959 0.0783 9 6 1.2549 -2.4969 -0.1108 10 7 0.3972 -2.4676 -1.2983 11 6 0.9914 -2.5678 -2.6336 12 6 0.9684 -4.0048 -3.0871 13 6 1.9858 -4.8730 -2.7212 14 6 1.9207 -6.1872 -3.1577 15 6 0.8568 -6.5828 -3.9466 16 7 -0.0907 -5.7283 -4.2793 17 6 -0.0637 -4.4723 -3.8781 18 6 -0.9384 -2.3487 -1.1621 19 8 -1.6483 -2.3250 -2.1450 20 6 -1.5495 -2.2451 0.2116 21 6 -3.0692 -2.1209 0.0856 22 6 -3.4199 -0.7984 -0.6032 23 6 -4.9423 -0.6465 -0.6541 24 8 -5.4701 -0.7047 0.6726 25 6 -5.2140 -1.9372 1.3489 26 6 -3.7023 -2.1410 1.4802 27 1 -0.4849 0.8369 0.0733 28 1 1.9656 -3.3189 -0.1961 29 1 0.6401 -2.6387 0.7780 30 1 0.4198 -1.9571 -3.3324 31 1 2.0218 -2.2138 -2.6003 32 1 2.8075 -4.5344 -2.1074 33 1 2.6939 -6.8916 -2.8888 34 1 0.8009 -7.6039 -4.2941 35 1 -0.8581 -3.8015 -4.1705 36 1 -1.3046 -3.1383 0.7864 37 1 -1.1535 -1.3660 0.7200 38 1 -3.4556 -2.9534 -0.5023 39 1 -2.9896 0.0304 -0.0410 40 1 -3.0196 -0.7985 -1.6172 41 1 -5.3684 -1.4532 -1.2506 42 1 -5.1970 0.3127 -1.1048 43 1 -5.6435 -2.7609 0.7787 44 1 -5.6643 -1.9082 2.3411 45 1 -3.5042 -3.1013 1.9563 46 1 -3.2778 -1.3393 2.0846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117244721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:07 Heat of formation + Delta-G solvation = -69.857513 kcal Electronic energy + Delta-G solvation = -28026.417011 eV Core-core repulsion = 24301.042131 eV Total energy + Delta-G solvation = -3725.374880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29147 -40.63003 -39.62057 -36.77750 -35.48216 -34.50373 -33.25928 -32.51384 -31.90969 -29.88624 -29.32380 -27.10756 -24.82273 -24.42919 -24.30109 -24.18576 -22.77211 -20.93175 -19.69865 -18.47933 -17.95322 -17.64425 -17.11106 -16.97725 -16.83598 -16.63204 -16.38434 -16.23188 -15.85585 -15.49224 -14.97856 -14.85610 -14.50467 -14.28812 -14.09857 -13.93022 -13.72441 -13.56750 -13.31073 -12.91939 -12.91535 -12.80550 -12.63173 -12.44729 -12.40930 -12.12432 -11.82286 -11.69463 -11.55573 -11.29302 -11.10055 -10.77107 -10.61027 -10.47948 -10.39849 -10.18889 -9.80413 -9.04523 -8.03198 -6.29789 0.18899 0.37341 1.40617 1.47447 1.52385 2.27756 2.41757 2.62030 3.00891 3.01863 3.29645 3.57489 3.89385 3.92934 3.97546 3.99963 4.06663 4.12434 4.17126 4.19405 4.35513 4.43543 4.54315 4.59954 4.71423 4.77204 4.80292 4.83356 4.87497 4.89811 4.92091 4.93761 5.02486 5.10759 5.21825 5.25971 5.33215 5.43132 5.46808 5.52882 5.60459 5.83132 5.90525 6.08744 6.21867 6.30511 6.76618 7.04712 7.12754 7.44340 7.84686 8.86329 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.005780 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.315485 B = 4842.881072 C = 7176.784778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.232 3.768 10 N -0.580 5.580 11 C 0.172 3.828 12 C -0.150 4.150 13 C -0.068 4.068 14 C -0.165 4.165 15 C 0.083 3.917 16 N -0.515 5.515 17 C 0.101 3.899 18 C 0.543 3.457 19 O -0.612 6.612 20 C -0.138 4.138 21 C -0.062 4.062 22 C -0.134 4.134 23 C 0.067 3.933 24 O -0.402 6.402 25 C 0.061 3.939 26 C -0.144 4.144 27 H 0.262 0.738 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.140 0.860 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -8.607 0.487 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.771 3.229 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.078 0.922 9 C 0.112 3.888 10 N -0.309 5.309 11 C 0.047 3.953 12 C -0.153 4.153 13 C -0.095 4.095 14 C -0.184 4.184 15 C -0.075 4.075 16 N -0.224 5.224 17 C -0.056 4.056 18 C 0.335 3.665 19 O -0.497 6.497 20 C -0.178 4.178 21 C -0.081 4.081 22 C -0.172 4.172 23 C -0.010 4.010 24 O -0.321 6.321 25 C -0.016 4.016 26 C -0.181 4.181 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.202 0.798 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.157 0.843 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.104 0.896 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.262 -8.596 -0.474 8.901 hybrid contribution 1.419 1.442 0.233 2.037 sum -0.843 -7.154 -0.241 7.207 Atomic orbital electron populations 1.69687 1.06278 1.27002 1.48536 1.25499 0.95483 1.01337 0.93576 0.85796 0.79086 0.80534 0.77445 1.21549 1.21443 1.19368 1.21719 0.93902 0.92116 1.51432 0.92222 1.19291 0.90199 0.95150 0.84165 1.48285 1.06088 1.70140 1.06396 1.19798 0.99314 0.90756 0.85392 1.21363 0.96548 0.98385 0.99018 1.21790 0.97527 0.93568 0.96578 1.22480 1.00612 0.96525 0.98771 1.23353 0.89595 0.99986 0.94536 1.67687 1.28105 1.03551 1.23056 1.22560 0.96504 0.92181 0.94312 1.20590 0.81843 0.72735 0.91348 1.90443 1.61945 1.55129 1.42177 1.22157 0.95074 1.05469 0.95060 1.20790 0.94286 0.97013 0.95983 1.22042 0.96116 0.97474 1.01522 1.22585 0.92632 1.02152 0.83600 1.87844 1.77654 1.38187 1.28407 1.22716 0.94550 0.86114 0.98171 1.22201 0.96570 1.02964 0.96405 0.92867 0.94445 0.94437 0.93009 0.89589 0.83528 0.81109 0.79807 0.84759 0.91664 0.84310 0.93200 0.93048 0.91985 0.93139 0.88519 0.92680 0.86869 0.89638 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.03 8.27 21.45 0.18 -42.86 16 2 C 0.04 2.11 5.33 84.65 0.45 2.56 16 3 Si 0.94 39.87 29.54 68.60 2.03 41.89 16 4 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.55 -25.84 9.11 25.60 0.23 -25.61 16 8 H 0.06 2.75 7.82 -2.91 -0.02 2.73 16 9 C 0.23 9.90 5.66 85.63 0.48 10.39 16 10 N -0.58 -25.09 2.11 -830.49 -1.75 -26.84 16 11 C 0.17 6.85 5.43 85.64 0.46 7.32 16 12 C -0.15 -5.24 5.44 -19.77 -0.11 -5.35 16 13 C -0.07 -1.93 9.88 22.47 0.22 -1.70 16 14 C -0.16 -3.76 10.11 22.36 0.23 -3.53 16 15 C 0.08 2.10 11.18 84.69 0.95 3.05 16 16 N -0.51 -17.35 10.36 -195.84 -2.03 -19.38 16 17 C 0.10 3.72 10.67 84.67 0.90 4.62 16 18 C 0.54 24.64 6.08 87.66 0.53 25.17 16 19 O -0.61 -29.98 13.11 -3.02 -0.04 -30.02 16 20 C -0.14 -5.66 3.29 29.85 0.10 -5.56 16 21 C -0.06 -2.26 1.92 -10.67 -0.02 -2.28 16 22 C -0.13 -5.12 5.13 30.69 0.16 -4.96 16 23 C 0.07 2.14 6.84 72.01 0.49 2.63 16 24 O -0.40 -12.75 10.77 -148.98 -1.60 -14.35 16 25 C 0.06 1.60 6.84 72.01 0.49 2.09 16 26 C -0.14 -4.24 5.42 30.68 0.17 -4.08 16 27 H 0.26 12.85 8.32 -92.71 -0.77 12.08 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.65 5.92 -2.39 -0.01 1.63 16 30 H 0.05 2.26 7.49 -2.39 -0.02 2.25 16 31 H 0.09 3.31 7.79 -2.39 -0.02 3.29 16 32 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.13 5.44 7.68 -2.91 -0.02 5.42 16 36 H 0.07 2.49 7.55 -2.38 -0.02 2.47 16 37 H 0.14 6.30 4.96 -2.39 -0.01 6.29 16 38 H 0.05 1.91 7.95 -2.39 -0.02 1.89 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 2.74 6.07 -2.38 -0.01 2.73 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -58.32 364.65 3.49 -54.83 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.96 Total: 31.96 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 5.74 Total: 4.75 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -3.60 Total: -89.07 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.64 Total: -44.37 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -58.32 3.49 -54.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117244721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.024 kcal (2) G-P(sol) polarization free energy of solvation -58.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds