Wall clock time and date at job start Tue Mar 31 2020 12:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38256 * 119.99948 * 2 1 4 4 C 1.38208 * 119.99892 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00038 * 359.77029 * 4 3 2 6 6 C 1.38211 * 119.99646 * 0.46641 * 5 4 3 7 7 C 1.50703 * 119.99866 * 179.78527 * 6 5 4 8 8 H 1.09009 * 109.47235 * 164.05353 * 7 6 5 9 9 C 1.52994 * 109.47358 * 284.05489 * 7 6 5 10 10 N 1.46491 * 109.47313 * 184.13140 * 9 7 6 11 11 C 1.34778 * 120.00259 * 177.19311 * 10 9 7 12 12 O 1.21692 * 120.00122 * 0.02562 * 11 10 9 13 13 C 1.46376 * 120.00219 * 179.97438 * 11 10 9 14 14 H 1.07995 * 120.00211 * 0.02562 * 13 11 10 15 15 C 1.40051 * 119.99987 * 180.02562 * 13 11 10 16 16 N 1.30677 * 120.00143 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00069 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47269 * 90.00135 * 17 15 13 19 19 H 1.48507 * 109.47228 * 210.00105 * 17 15 13 20 20 H 1.48497 * 109.47292 * 330.00035 * 17 15 13 21 21 N 1.46900 * 109.46976 * 44.05950 * 7 6 5 22 22 C 1.47017 * 110.99816 * 143.46983 * 21 7 6 23 23 C 1.53099 * 109.25356 * 182.34660 * 22 21 7 24 24 O 1.43011 * 109.29443 * 303.21649 * 23 22 21 25 25 C 1.43010 * 113.74188 * 58.64862 * 24 23 22 26 26 C 1.47016 * 110.99635 * 267.14816 * 21 7 6 27 27 C 1.38216 * 119.99679 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46746 * 270.02139 * 1 2 3 29 29 H 1.09004 * 109.47008 * 30.01594 * 1 2 3 30 30 H 1.08997 * 109.46774 * 150.01741 * 1 2 3 31 31 H 1.07999 * 120.00260 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99957 * 179.97438 * 4 3 2 33 33 H 1.07997 * 119.99929 * 180.24940 * 5 4 3 34 34 H 1.09005 * 109.47157 * 304.13449 * 9 7 6 35 35 H 1.09006 * 109.46901 * 64.12707 * 9 7 6 36 36 H 0.96996 * 120.00393 * 357.19815 * 10 9 7 37 37 H 0.96997 * 120.00392 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.47799 * 62.43506 * 22 21 7 39 39 H 1.09004 * 109.54146 * 302.29949 * 22 21 7 40 40 H 1.09005 * 109.50856 * 183.25600 * 23 22 21 41 41 H 1.09005 * 109.50824 * 63.17418 * 23 22 21 42 42 H 1.08997 * 109.50687 * 61.25993 * 25 24 23 43 43 H 1.09000 * 109.50913 * 181.35217 * 25 24 23 44 44 H 1.08997 * 109.50906 * 57.66619 * 26 21 7 45 45 H 1.09009 * 109.54274 * 297.56211 * 26 21 7 46 46 H 1.08001 * 120.00092 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 -0.0001 0.0059 6 6 3.5807 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0019 8 1 3.6588 -3.3114 0.2800 9 6 4.8984 -2.7663 -1.3955 10 7 5.5459 -4.0801 -1.4203 11 6 6.0681 -4.5524 -2.5696 12 8 6.0022 -3.8873 -3.5865 13 6 6.7156 -5.8650 -2.5942 14 1 6.7745 -6.4551 -1.6917 15 6 7.2587 -6.3555 -3.7883 16 7 7.1879 -5.6413 -4.8803 17 14 8.0844 -8.0308 -3.8200 18 1 7.0767 -9.0733 -4.1404 19 1 9.1501 -8.0380 -4.8543 20 1 8.6829 -8.3129 -2.4906 21 7 5.4369 -2.4302 0.9697 22 6 5.6300 -3.7216 1.6452 23 6 6.7466 -3.5860 2.6839 24 8 7.9382 -3.1275 2.0396 25 6 7.7854 -1.8716 1.3728 26 6 6.6801 -1.9900 0.3201 27 6 2.1981 -1.1970 0.0005 28 1 -0.3632 0.0004 1.0276 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6584 2.1327 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 5.3517 0.0000 0.0104 34 1 4.0880 -2.7467 -2.1243 35 1 5.6289 -1.9963 -1.6439 36 1 5.5988 -4.6102 -0.6098 37 1 7.5644 -5.9808 -5.7073 38 1 5.9061 -4.4782 0.9108 39 1 4.7050 -4.0155 2.1414 40 1 6.9329 -4.5552 3.1467 41 1 6.4473 -2.8692 3.4486 42 1 7.5159 -1.1045 2.0988 43 1 8.7232 -1.6005 0.8880 44 1 6.5209 -1.0202 -0.1512 45 1 6.9741 -2.7182 -0.4359 46 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129888363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:28 Heat of formation + Delta-G solvation = -39.564424 kcal Electronic energy + Delta-G solvation = -27572.622510 eV Core-core repulsion = 23848.561236 eV Total energy + Delta-G solvation = -3724.061273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38261 -38.94402 -37.46024 -36.06615 -32.87843 -32.80633 -32.15810 -31.56254 -31.12837 -28.47904 -26.89194 -26.70474 -25.29291 -24.13758 -22.92190 -21.82094 -20.53235 -19.74288 -19.64777 -17.36960 -16.58126 -16.52429 -16.03379 -15.52726 -15.40756 -14.93333 -14.85054 -14.69745 -14.51214 -14.27574 -13.96000 -13.76151 -13.54642 -13.13077 -12.93618 -12.54252 -12.44214 -12.23319 -12.20719 -11.99032 -11.75188 -11.44326 -11.25394 -11.13407 -11.03022 -10.89880 -10.87990 -10.65067 -10.48695 -10.34293 -10.23287 -9.52168 -8.87725 -8.73599 -8.50117 -8.23476 -7.64657 -7.54847 -6.21037 -4.67023 1.43440 1.47553 3.12887 3.19910 3.23531 3.67948 3.92510 4.04146 4.08799 4.54829 4.56400 4.82157 4.90419 4.96301 5.05259 5.08329 5.11451 5.16907 5.29655 5.31609 5.34899 5.41750 5.50128 5.50476 5.55815 5.64217 5.70372 5.72250 5.75810 5.77818 5.92401 5.97966 6.10306 6.16540 6.25441 6.30877 6.40719 6.57621 6.61988 6.70446 7.04059 7.08012 7.12516 7.24923 7.40717 7.84924 8.01016 8.27628 8.99981 9.45123 10.56577 10.74682 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004034 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.507452 B = 6938.680251 C = 8296.037953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.051 4.051 7 C 0.109 3.891 8 H 0.086 0.914 9 C 0.112 3.888 10 N -0.768 5.768 11 C 0.554 3.446 12 O -0.578 6.578 13 C -0.544 4.544 14 H 0.066 0.934 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 N -0.523 5.523 22 C 0.011 3.989 23 C 0.068 3.932 24 O -0.382 6.382 25 C 0.067 3.933 26 C -0.004 4.004 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.377 0.623 37 H 0.268 0.732 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 9.601 14.629 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.124 4.124 6 C -0.052 4.052 7 C 0.001 3.999 8 H 0.104 0.896 9 C -0.014 4.014 10 N -0.428 5.428 11 C 0.358 3.642 12 O -0.461 6.461 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.396 5.396 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 N -0.247 5.247 22 C -0.117 4.117 23 C -0.010 4.010 24 O -0.301 6.301 25 C -0.010 4.010 26 C -0.131 4.131 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.212 0.788 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.357 10.348 14.024 18.917 hybrid contribution 0.291 -1.469 -0.310 1.529 sum -7.066 8.879 13.714 17.800 Atomic orbital electron populations 1.20765 0.91456 1.02649 1.02020 1.19816 0.95814 0.93113 1.00262 1.20950 0.94296 0.97213 1.02038 1.21102 0.94235 0.97906 1.00468 1.21160 1.00298 0.91691 0.99233 1.19574 0.93009 0.94283 0.98309 1.20908 0.92601 0.94795 0.91609 0.89561 1.21482 0.97245 0.88338 0.94363 1.46504 1.64629 1.18369 1.13272 1.18238 0.78103 0.87041 0.80815 1.90608 1.62027 1.60605 1.32852 1.20855 1.39272 1.01818 0.96193 0.91596 1.25695 0.94398 0.98095 0.94961 1.70018 1.34229 1.35567 0.99758 0.86380 0.79236 0.82445 0.78767 1.19749 1.20409 1.18856 1.62411 1.05038 1.27890 1.29395 1.22986 0.99872 0.91119 0.97772 1.22600 0.84608 0.99958 0.93786 1.88005 1.33553 1.37897 1.70620 1.22659 0.98608 0.85762 0.93990 1.23236 0.89799 1.02555 0.97545 1.20870 0.93383 0.97582 1.01365 0.91447 0.91764 0.91594 0.86578 0.86361 0.85704 0.92623 0.92442 0.78811 0.92087 0.92710 0.89818 0.88658 0.92702 0.92936 0.88670 0.89654 0.90358 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.05 5.88 -104.62 -0.62 -1.66 16 3 C -0.13 -1.43 9.70 -39.59 -0.38 -1.81 16 4 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 5 C -0.11 -1.41 9.22 -39.58 -0.37 -1.78 16 6 C -0.05 -0.70 4.95 -104.62 -0.52 -1.22 16 7 C 0.11 1.62 2.33 -68.87 -0.16 1.46 16 8 H 0.09 1.23 7.43 -51.92 -0.39 0.84 16 9 C 0.11 2.15 4.28 -4.05 -0.02 2.13 16 10 N -0.77 -16.99 4.04 -61.73 -0.25 -17.24 16 11 C 0.55 15.73 7.75 -12.99 -0.10 15.63 16 12 O -0.58 -18.78 15.02 5.20 0.08 -18.71 16 13 C -0.54 -15.43 9.54 -35.63 -0.34 -15.77 16 14 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 15 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 16 N -0.77 -23.09 11.83 55.55 0.66 -22.44 16 17 Si 0.91 20.27 29.56 -169.99 -5.02 15.24 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 21 N -0.52 -7.24 4.26 -227.71 -0.97 -8.21 16 22 C 0.01 0.14 5.26 -3.71 -0.02 0.12 16 23 C 0.07 0.82 7.01 37.21 0.26 1.08 16 24 O -0.38 -5.69 10.83 -35.23 -0.38 -6.08 16 25 C 0.07 0.89 7.01 37.21 0.26 1.15 16 26 C 0.00 -0.06 3.93 -3.71 -0.01 -0.07 16 27 C -0.11 -1.46 9.32 -39.58 -0.37 -1.83 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.62 4.89 -52.49 -0.26 1.36 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.17 6.13 -51.93 -0.32 0.85 16 36 H 0.38 7.51 5.30 -40.82 -0.22 7.29 16 37 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 38 H 0.05 0.83 5.27 -51.93 -0.27 0.55 16 39 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.20 4.77 -51.93 -0.25 0.96 16 45 H 0.08 1.47 5.63 -51.92 -0.29 1.18 16 46 H 0.12 1.39 8.01 -52.49 -0.42 0.97 16 LS Contribution 361.32 15.07 5.45 5.45 Total: -1.00 -34.66 361.32 -9.55 -44.21 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.60 Total: 10.39 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.51 Total: -2.62 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.56 Total: -47.89 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.30 Total: -24.78 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.66 -9.55 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129888363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.648 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds