Wall clock time and date at job start Tue Mar 31 2020 12:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38256 * 119.99948 * 2 1 4 4 C 1.38208 * 119.99892 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00038 * 359.77029 * 4 3 2 6 6 C 1.38211 * 119.99646 * 0.46641 * 5 4 3 7 7 C 1.50703 * 119.99866 * 179.78527 * 6 5 4 8 8 H 1.09009 * 109.47235 * 164.05353 * 7 6 5 9 9 C 1.52994 * 109.47358 * 284.05489 * 7 6 5 10 10 N 1.46491 * 109.47313 * 184.13140 * 9 7 6 11 11 C 1.34778 * 120.00259 * 177.19311 * 10 9 7 12 12 O 1.21692 * 120.00122 * 0.02562 * 11 10 9 13 13 C 1.46376 * 120.00219 * 179.97438 * 11 10 9 14 14 H 1.07995 * 120.00211 * 0.02562 * 13 11 10 15 15 C 1.40051 * 119.99987 * 180.02562 * 13 11 10 16 16 N 1.30677 * 120.00143 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00069 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47269 * 90.00135 * 17 15 13 19 19 H 1.48507 * 109.47228 * 210.00105 * 17 15 13 20 20 H 1.48497 * 109.47292 * 330.00035 * 17 15 13 21 21 N 1.46900 * 109.46976 * 44.05950 * 7 6 5 22 22 C 1.47017 * 110.99816 * 143.46983 * 21 7 6 23 23 C 1.53099 * 109.25356 * 182.34660 * 22 21 7 24 24 O 1.43011 * 109.29443 * 303.21649 * 23 22 21 25 25 C 1.43010 * 113.74188 * 58.64862 * 24 23 22 26 26 C 1.47016 * 110.99635 * 267.14816 * 21 7 6 27 27 C 1.38216 * 119.99679 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46746 * 270.02139 * 1 2 3 29 29 H 1.09004 * 109.47008 * 30.01594 * 1 2 3 30 30 H 1.08997 * 109.46774 * 150.01741 * 1 2 3 31 31 H 1.07999 * 120.00260 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99957 * 179.97438 * 4 3 2 33 33 H 1.07997 * 119.99929 * 180.24940 * 5 4 3 34 34 H 1.09005 * 109.47157 * 304.13449 * 9 7 6 35 35 H 1.09006 * 109.46901 * 64.12707 * 9 7 6 36 36 H 0.96996 * 120.00393 * 357.19815 * 10 9 7 37 37 H 0.96997 * 120.00392 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.47799 * 62.43506 * 22 21 7 39 39 H 1.09004 * 109.54146 * 302.29949 * 22 21 7 40 40 H 1.09005 * 109.50856 * 183.25600 * 23 22 21 41 41 H 1.09005 * 109.50824 * 63.17418 * 23 22 21 42 42 H 1.08997 * 109.50687 * 61.25993 * 25 24 23 43 43 H 1.09000 * 109.50913 * 181.35217 * 25 24 23 44 44 H 1.08997 * 109.50906 * 57.66619 * 26 21 7 45 45 H 1.09009 * 109.54274 * 297.56211 * 26 21 7 46 46 H 1.08001 * 120.00092 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 -0.0001 0.0059 6 6 3.5807 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0019 8 1 3.6588 -3.3114 0.2800 9 6 4.8984 -2.7663 -1.3955 10 7 5.5459 -4.0801 -1.4203 11 6 6.0681 -4.5524 -2.5696 12 8 6.0022 -3.8873 -3.5865 13 6 6.7156 -5.8650 -2.5942 14 1 6.7745 -6.4551 -1.6917 15 6 7.2587 -6.3555 -3.7883 16 7 7.1879 -5.6413 -4.8803 17 14 8.0844 -8.0308 -3.8200 18 1 7.0767 -9.0733 -4.1404 19 1 9.1501 -8.0380 -4.8543 20 1 8.6829 -8.3129 -2.4906 21 7 5.4369 -2.4302 0.9697 22 6 5.6300 -3.7216 1.6452 23 6 6.7466 -3.5860 2.6839 24 8 7.9382 -3.1275 2.0396 25 6 7.7854 -1.8716 1.3728 26 6 6.6801 -1.9900 0.3201 27 6 2.1981 -1.1970 0.0005 28 1 -0.3632 0.0004 1.0276 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6584 2.1327 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 5.3517 0.0000 0.0104 34 1 4.0880 -2.7467 -2.1243 35 1 5.6289 -1.9963 -1.6439 36 1 5.5988 -4.6102 -0.6098 37 1 7.5644 -5.9808 -5.7073 38 1 5.9061 -4.4782 0.9108 39 1 4.7050 -4.0155 2.1414 40 1 6.9329 -4.5552 3.1467 41 1 6.4473 -2.8692 3.4486 42 1 7.5159 -1.1045 2.0988 43 1 8.7232 -1.6005 0.8880 44 1 6.5209 -1.0202 -0.1512 45 1 6.9741 -2.7182 -0.4359 46 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129888363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:27 Heat of formation + Delta-G solvation = -63.946951 kcal Electronic energy + Delta-G solvation = -27573.679815 eV Core-core repulsion = 23848.561236 eV Total energy + Delta-G solvation = -3725.118579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.58466 -39.93963 -39.29688 -37.52661 -34.85982 -34.12301 -33.73765 -32.67675 -32.21225 -29.87919 -28.48453 -27.71093 -26.83133 -25.24086 -24.20720 -22.79976 -21.78114 -21.52778 -20.94302 -19.22742 -17.78237 -17.66557 -17.40062 -17.17135 -16.71487 -16.16946 -16.05819 -15.98319 -15.81231 -15.63452 -15.44494 -14.91944 -14.62173 -14.43726 -14.27947 -14.04200 -13.75476 -13.63666 -13.15537 -13.06247 -13.01121 -12.88173 -12.72883 -12.70556 -12.69759 -12.27121 -12.11159 -12.02123 -11.89983 -11.77855 -11.40542 -10.97352 -10.61824 -9.98524 -9.77603 -9.60696 -9.43875 -9.31109 -8.33693 -6.91375 0.45577 0.53231 1.36807 1.38420 1.53873 2.20783 2.41691 2.59169 2.84256 2.99380 3.03383 3.55581 3.69061 3.85091 3.87695 3.96673 4.04925 4.09153 4.15213 4.18405 4.23843 4.33697 4.38432 4.51423 4.54947 4.55901 4.63112 4.73218 4.79486 4.84045 4.85485 4.87492 4.97400 5.02238 5.07327 5.18021 5.26175 5.34578 5.60634 5.66650 5.72977 5.78877 5.82948 5.96377 6.10092 6.17197 6.17677 6.21101 6.81558 7.42023 8.42097 8.61683 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004034 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.507452 B = 6938.680251 C = 8296.037953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.069 4.069 7 C 0.126 3.874 8 H 0.094 0.906 9 C 0.120 3.880 10 N -0.752 5.752 11 C 0.538 3.462 12 O -0.631 6.631 13 C -0.572 4.572 14 H 0.083 0.917 15 C 0.030 3.970 16 N -0.820 5.820 17 Si 0.997 3.003 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.250 1.250 21 N -0.510 5.510 22 C 0.008 3.992 23 C 0.067 3.933 24 O -0.406 6.406 25 C 0.070 3.930 26 C 0.002 3.998 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.030 0.970 35 H 0.041 0.959 36 H 0.390 0.610 37 H 0.275 0.725 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.034 0.966 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 9.402 16.898 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.070 4.070 7 C 0.017 3.983 8 H 0.112 0.888 9 C -0.006 4.006 10 N -0.410 5.410 11 C 0.343 3.657 12 O -0.518 6.518 13 C -0.609 4.609 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.449 5.449 17 Si 0.816 3.184 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.174 1.174 21 N -0.234 5.234 22 C -0.121 4.121 23 C -0.010 4.010 24 O -0.324 6.324 25 C -0.007 4.007 26 C -0.126 4.126 27 C -0.145 4.145 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.052 0.948 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.071 10.156 16.364 20.882 hybrid contribution 0.438 -1.305 -0.985 1.693 sum -7.633 8.851 15.379 19.316 Atomic orbital electron populations 1.20814 0.89383 1.03400 1.03123 1.20191 0.97434 0.92728 0.99134 1.21324 0.94235 0.98259 1.00747 1.21395 0.94856 0.98143 0.99693 1.21253 1.00340 0.92298 1.00129 1.19528 0.93588 0.93722 1.00183 1.20741 0.92846 0.96065 0.88657 0.88751 1.21509 0.95699 0.86292 0.97053 1.46133 1.63376 1.19340 1.12136 1.18614 0.78246 0.87375 0.81509 1.90557 1.64139 1.61979 1.35116 1.21371 1.39780 1.02264 0.97462 0.89917 1.26960 0.94517 1.03064 0.93963 1.70183 1.35466 1.38407 1.00861 0.85028 0.78080 0.75798 0.79462 1.18404 1.19616 1.17359 1.62516 1.04206 1.28333 1.28329 1.23124 1.01613 0.89805 0.97527 1.22787 0.83285 1.01440 0.93460 1.87974 1.35067 1.38497 1.70907 1.22696 0.98121 0.85983 0.93876 1.23132 0.90855 1.01422 0.97234 1.21063 0.93054 0.98711 1.01704 0.90054 0.90424 0.91492 0.83931 0.84237 0.86087 0.95164 0.94073 0.77308 0.91491 0.95172 0.87347 0.86764 0.90971 0.90808 0.88244 0.89322 0.94779 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.09 -2.03 5.88 -19.86 -0.12 -2.15 16 3 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 4 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 5 C -0.12 -3.22 9.22 22.27 0.21 -3.02 16 6 C -0.07 -1.92 4.95 -19.87 -0.10 -2.02 16 7 C 0.13 3.78 2.33 44.17 0.10 3.88 16 8 H 0.09 2.66 7.43 -2.38 -0.02 2.65 16 9 C 0.12 4.91 4.28 86.38 0.37 5.28 16 10 N -0.75 -34.89 4.04 -467.42 -1.89 -36.78 16 11 C 0.54 32.07 7.75 86.36 0.67 32.74 16 12 O -0.63 -43.40 15.02 -4.32 -0.06 -43.47 16 13 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 14 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 15 C 0.03 1.72 5.50 85.30 0.47 2.19 16 16 N -0.82 -51.01 11.83 21.84 0.26 -50.75 16 17 Si 1.00 41.67 29.56 68.60 2.03 43.69 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 21 N -0.51 -13.98 4.26 -874.33 -3.72 -17.70 16 22 C 0.01 0.19 5.26 86.31 0.45 0.64 16 23 C 0.07 1.50 7.01 72.02 0.50 2.00 16 24 O -0.41 -11.69 10.83 -148.98 -1.61 -13.31 16 25 C 0.07 1.83 7.01 72.02 0.50 2.34 16 26 C 0.00 0.05 3.93 86.31 0.34 0.39 16 27 C -0.13 -3.17 9.32 22.27 0.21 -2.96 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.12 3.18 4.89 -2.91 -0.01 3.17 16 34 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.04 1.81 6.13 -2.38 -0.01 1.79 16 36 H 0.39 16.05 5.30 -92.71 -0.49 15.56 16 37 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 38 H 0.03 0.91 5.27 -2.39 -0.01 0.90 16 39 H 0.11 2.16 8.02 -2.38 -0.02 2.15 16 40 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.09 2.61 4.77 -2.39 -0.01 2.60 16 45 H 0.03 1.35 5.63 -2.38 -0.01 1.34 16 46 H 0.13 2.85 8.01 -2.91 -0.02 2.83 16 Total: -1.00 -78.93 361.32 0.51 -78.42 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: 0.51 Total: 39.42 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.00 Total: 0.47 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -5.35 Total: -105.23 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -1.68 Total: -56.77 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -78.93 0.51 -78.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129888363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.475 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds