Wall clock time and date at job start Tue Mar 31 2020 13:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38302 * 119.92097 * 2 1 4 4 C 1.38101 * 120.07349 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.03840 * 180.02562 * 4 3 2 6 6 C 1.38935 * 119.92199 * 0.02562 * 4 3 2 7 7 N 1.39728 * 120.07239 * 179.97438 * 6 4 3 8 8 C 1.34772 * 119.99861 * 128.26518 * 7 6 4 9 9 O 1.21375 * 120.00237 * 355.21219 * 8 7 6 10 10 C 1.49353 * 119.99690 * 175.21278 * 8 7 6 11 11 O 1.21362 * 120.00334 * 5.73503 * 10 8 7 12 12 N 1.34777 * 119.99858 * 185.73167 * 10 8 7 13 13 C 1.46493 * 120.00254 * 357.01916 * 12 10 8 14 14 C 1.46500 * 119.99865 * 177.02265 * 12 10 8 15 15 H 1.08998 * 109.47669 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47233 * 239.99835 * 14 12 10 17 17 C 1.50707 * 109.47300 * 119.99844 * 14 12 10 18 18 H 1.08003 * 119.99413 * 0.02562 * 17 14 12 19 19 C 1.37870 * 120.00283 * 179.97438 * 17 14 12 20 20 N 1.31512 * 119.99988 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 120.00179 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46762 * 59.99857 * 21 19 17 23 23 H 1.48499 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46685 * 300.00061 * 21 19 17 25 25 C 1.38927 * 119.85014 * 0.25822 * 6 4 3 26 26 C 1.50698 * 120.03871 * 179.72176 * 25 6 4 27 27 C 1.38102 * 119.92226 * 359.46673 * 25 6 4 28 28 H 1.09002 * 109.47472 * 90.00127 * 1 2 3 29 29 H 1.08995 * 109.47458 * 210.00115 * 1 2 3 30 30 H 1.09002 * 109.47504 * 330.00506 * 1 2 3 31 31 H 1.07991 * 119.96139 * 359.97428 * 3 2 1 32 32 H 1.08995 * 109.47137 * 269.97854 * 5 4 3 33 33 H 1.09007 * 109.46881 * 29.97865 * 5 4 3 34 34 H 1.08996 * 109.47089 * 149.97261 * 5 4 3 35 35 H 0.97008 * 119.99615 * 308.25972 * 7 6 4 36 36 H 1.09002 * 109.47791 * 273.84851 * 13 12 10 37 37 H 1.09007 * 109.47114 * 33.84452 * 13 12 10 38 38 H 1.09005 * 109.47511 * 153.83942 * 13 12 10 39 39 H 1.09000 * 109.47192 * 300.00155 * 16 14 12 40 40 H 1.08997 * 109.46678 * 59.99924 * 16 14 12 41 41 H 1.08997 * 109.47273 * 179.97438 * 16 14 12 42 42 H 0.97007 * 120.00469 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.47086 * 98.31553 * 26 25 6 44 44 H 1.08993 * 109.47501 * 218.31539 * 26 25 6 45 45 H 1.09000 * 109.47408 * 338.32197 * 26 25 6 46 46 H 1.07998 * 119.96015 * 180.30037 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.3287 2.5089 0.0011 6 6 4.2740 0.0000 0.0005 7 7 5.6713 0.0001 0.0005 8 6 6.3452 -0.7227 0.9169 9 8 5.7415 -1.3037 1.7951 10 6 7.8348 -0.8088 0.8518 11 8 8.4460 -0.1461 0.0394 12 7 8.5003 -1.6224 1.6954 13 6 7.7688 -2.3727 2.7192 14 6 9.9552 -1.7565 1.5886 15 1 10.3195 -1.1273 0.7765 16 6 10.3133 -3.2164 1.3034 17 6 10.5958 -1.3257 2.8830 18 1 9.9805 -0.9865 3.7032 19 6 11.9671 -1.3657 3.0203 20 7 12.7161 -1.7802 2.0220 21 14 12.7610 -0.8325 4.6250 22 1 12.2644 -1.6893 5.7315 23 1 14.2358 -0.9682 4.5167 24 1 12.4139 0.5845 4.9020 25 6 3.5778 -1.2022 -0.0054 26 6 4.3287 -2.5087 -0.0118 27 6 2.1968 -1.1985 -0.0002 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6549 2.1328 -0.0004 32 1 4.5104 2.8240 -1.0264 33 1 3.7376 3.2674 0.5146 34 1 5.2809 2.3805 0.5157 35 1 6.1563 0.5204 -0.6592 36 1 7.6481 -1.7525 3.6074 37 1 6.7876 -2.6508 2.3342 38 1 8.3262 -3.2731 2.9776 39 1 9.9492 -3.8452 2.1159 40 1 9.8500 -3.5278 0.3673 41 1 11.3958 -3.3160 1.2235 42 1 13.6810 -1.8081 2.1184 43 1 4.3808 -2.9028 1.0032 44 1 3.8108 -3.2224 -0.6524 45 1 5.3378 -2.3461 -0.3905 46 1 1.6550 -2.1328 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131937838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:40 Heat of formation + Delta-G solvation = -37.154870 kcal Electronic energy + Delta-G solvation = -27212.791761 eV Core-core repulsion = 23488.834974 eV Total energy + Delta-G solvation = -3723.956787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.06425 -39.48003 -37.89560 -35.93806 -34.97240 -33.64682 -32.79854 -32.15001 -29.53055 -28.09436 -26.95542 -26.81524 -26.12968 -25.27926 -24.02124 -21.44260 -20.96828 -20.19089 -19.30557 -17.65386 -17.17795 -16.40514 -16.31976 -15.96200 -15.12888 -15.09342 -14.60642 -14.47920 -14.19480 -13.91070 -13.65647 -13.36412 -13.21644 -13.17981 -13.06199 -12.76752 -12.62787 -12.54052 -12.37180 -11.92827 -11.81614 -11.59560 -11.36262 -11.26151 -11.21046 -11.10581 -10.84851 -10.80241 -10.61719 -10.27161 -10.20755 -9.90581 -9.24936 -8.80556 -8.65837 -8.47615 -8.19066 -7.73488 -6.12136 -4.20441 1.08756 1.26486 1.91361 2.76393 3.27233 3.31703 3.34514 3.52624 3.72370 4.06734 4.36989 4.61014 4.64146 4.69967 4.81643 5.11099 5.12829 5.19503 5.28998 5.33138 5.37777 5.46006 5.49567 5.60263 5.68758 5.71728 5.76678 6.00622 6.01447 6.15940 6.21685 6.28512 6.36326 6.44155 6.48134 6.59094 6.69623 6.72830 6.93032 6.95163 7.14558 7.29515 7.37929 7.64475 7.87927 8.04492 8.09258 8.34907 8.60812 8.84948 9.45801 10.93243 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025133 B = 0.003016 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.816732 B = 9281.076743 C = 9612.658317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.087 4.087 5 C -0.117 4.117 6 C 0.135 3.865 7 N -0.654 5.654 8 C 0.507 3.493 9 O -0.498 6.498 10 C 0.492 3.508 11 O -0.537 6.537 12 N -0.551 5.551 13 C 0.070 3.930 14 C 0.255 3.745 15 H 0.066 0.934 16 C -0.148 4.148 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.888 5.888 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.066 4.066 26 C -0.111 4.111 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.419 0.581 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.013 0.987 41 H 0.097 0.903 42 H 0.265 0.735 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 2.175 -5.260 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.174 4.174 6 C 0.042 3.958 7 N -0.303 5.303 8 C 0.291 3.709 9 O -0.372 6.372 10 C 0.273 3.727 11 O -0.417 6.417 12 N -0.281 5.281 13 C -0.073 4.073 14 C 0.155 3.845 15 H 0.084 0.916 16 C -0.206 4.206 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.068 4.068 26 C -0.168 4.168 27 C -0.133 4.133 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.055 2.015 -5.067 21.750 hybrid contribution 0.748 0.527 0.683 1.142 sum -20.307 2.542 -4.384 20.930 Atomic orbital electron populations 1.20755 0.91177 1.02701 1.02157 1.19862 0.95995 0.92980 1.00103 1.20692 0.92612 0.97637 1.02479 1.19849 0.93891 0.94160 1.01025 1.20772 1.00450 0.93638 1.02526 1.17290 0.82279 0.92800 1.03464 1.43183 1.04356 1.49013 1.33777 1.20873 0.89678 0.78955 0.81369 1.90646 1.70430 1.42545 1.33570 1.19649 0.86651 0.82819 0.83629 1.90718 1.68653 1.43989 1.38306 1.48254 1.10339 1.39925 1.29578 1.22197 0.97226 0.96478 0.91434 1.19159 0.71743 0.94645 0.98934 0.91593 1.22113 1.04631 0.97098 0.96774 1.21244 0.91786 1.44685 0.98903 0.92115 1.24877 0.96965 0.94866 0.96940 1.69860 1.05431 1.46338 1.30959 0.86506 0.78062 0.79278 0.83287 1.20131 1.21107 1.20185 1.19850 0.93730 0.94426 0.98771 1.20895 0.99330 0.93499 1.03041 1.20712 0.92710 0.97684 1.02181 0.91292 0.91596 0.91640 0.85835 0.90897 0.91196 0.91190 0.74223 0.93018 0.89111 0.91320 0.94732 0.96803 0.88443 0.92515 0.89585 0.91876 0.92321 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.09 -0.89 5.88 -104.58 -0.62 -1.51 16 3 C -0.12 -1.19 9.35 -39.61 -0.37 -1.56 16 4 C -0.09 -1.03 5.90 -104.42 -0.62 -1.64 16 5 C -0.12 -1.17 9.66 36.00 0.35 -0.82 16 6 C 0.13 1.83 5.84 -83.75 -0.49 1.35 16 7 N -0.65 -9.55 3.92 -10.30 -0.04 -9.59 16 8 C 0.51 8.83 5.86 -11.63 -0.07 8.76 16 9 O -0.50 -8.90 10.24 5.48 0.06 -8.84 16 10 C 0.49 10.28 7.73 -11.63 -0.09 10.19 16 11 O -0.54 -12.40 15.82 5.49 0.09 -12.31 16 12 N -0.55 -12.10 2.75 -175.80 -0.48 -12.59 16 13 C 0.07 1.32 8.83 59.84 0.53 1.85 16 14 C 0.25 6.46 2.63 -69.08 -0.18 6.28 16 15 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 16 C -0.15 -3.49 8.96 37.16 0.33 -3.15 16 17 C -0.53 -14.29 8.37 -34.44 -0.29 -14.58 16 18 H 0.06 1.64 7.65 -52.48 -0.40 1.24 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.07 -0.86 5.49 -104.42 -0.57 -1.43 16 26 C -0.11 -1.42 8.22 36.00 0.30 -1.13 16 27 C -0.11 -1.27 9.38 -39.61 -0.37 -1.64 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.59 8.09 -51.92 -0.42 0.17 16 34 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 35 H 0.42 5.67 8.14 -40.82 -0.33 5.33 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.58 5.22 -52.04 -0.27 1.31 16 38 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 39 H 0.03 0.76 6.66 -51.93 -0.35 0.41 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.09 1.17 7.13 -51.92 -0.37 0.80 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.83 6.12 -51.93 -0.32 0.51 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -30.27 369.47 -7.89 -38.15 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.79 Total: 5.50 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.89 Total: 2.23 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.10 Total: -46.32 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.14 Total: -21.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.27 -7.89 -38.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131937838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.998 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds