Wall clock time and date at job start Tue Mar 31 2020 13:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38302 * 119.92097 * 2 1 4 4 C 1.38101 * 120.07349 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.03840 * 180.02562 * 4 3 2 6 6 C 1.38935 * 119.92199 * 0.02562 * 4 3 2 7 7 N 1.39728 * 120.07239 * 179.97438 * 6 4 3 8 8 C 1.34772 * 119.99861 * 128.26518 * 7 6 4 9 9 O 1.21375 * 120.00237 * 355.21219 * 8 7 6 10 10 C 1.49353 * 119.99690 * 175.21278 * 8 7 6 11 11 O 1.21362 * 120.00334 * 5.73503 * 10 8 7 12 12 N 1.34777 * 119.99858 * 185.73167 * 10 8 7 13 13 C 1.46493 * 120.00254 * 357.01916 * 12 10 8 14 14 C 1.46500 * 119.99865 * 177.02265 * 12 10 8 15 15 H 1.08998 * 109.47669 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47233 * 239.99835 * 14 12 10 17 17 C 1.50707 * 109.47300 * 119.99844 * 14 12 10 18 18 H 1.08003 * 119.99413 * 0.02562 * 17 14 12 19 19 C 1.37870 * 120.00283 * 179.97438 * 17 14 12 20 20 N 1.31512 * 119.99988 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 120.00179 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46762 * 59.99857 * 21 19 17 23 23 H 1.48499 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46685 * 300.00061 * 21 19 17 25 25 C 1.38927 * 119.85014 * 0.25822 * 6 4 3 26 26 C 1.50698 * 120.03871 * 179.72176 * 25 6 4 27 27 C 1.38102 * 119.92226 * 359.46673 * 25 6 4 28 28 H 1.09002 * 109.47472 * 90.00127 * 1 2 3 29 29 H 1.08995 * 109.47458 * 210.00115 * 1 2 3 30 30 H 1.09002 * 109.47504 * 330.00506 * 1 2 3 31 31 H 1.07991 * 119.96139 * 359.97428 * 3 2 1 32 32 H 1.08995 * 109.47137 * 269.97854 * 5 4 3 33 33 H 1.09007 * 109.46881 * 29.97865 * 5 4 3 34 34 H 1.08996 * 109.47089 * 149.97261 * 5 4 3 35 35 H 0.97008 * 119.99615 * 308.25972 * 7 6 4 36 36 H 1.09002 * 109.47791 * 273.84851 * 13 12 10 37 37 H 1.09007 * 109.47114 * 33.84452 * 13 12 10 38 38 H 1.09005 * 109.47511 * 153.83942 * 13 12 10 39 39 H 1.09000 * 109.47192 * 300.00155 * 16 14 12 40 40 H 1.08997 * 109.46678 * 59.99924 * 16 14 12 41 41 H 1.08997 * 109.47273 * 179.97438 * 16 14 12 42 42 H 0.97007 * 120.00469 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.47086 * 98.31553 * 26 25 6 44 44 H 1.08993 * 109.47501 * 218.31539 * 26 25 6 45 45 H 1.09000 * 109.47408 * 338.32197 * 26 25 6 46 46 H 1.07998 * 119.96015 * 180.30037 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.3287 2.5089 0.0011 6 6 4.2740 0.0000 0.0005 7 7 5.6713 0.0001 0.0005 8 6 6.3452 -0.7227 0.9169 9 8 5.7415 -1.3037 1.7951 10 6 7.8348 -0.8088 0.8518 11 8 8.4460 -0.1461 0.0394 12 7 8.5003 -1.6224 1.6954 13 6 7.7688 -2.3727 2.7192 14 6 9.9552 -1.7565 1.5886 15 1 10.3195 -1.1273 0.7765 16 6 10.3133 -3.2164 1.3034 17 6 10.5958 -1.3257 2.8830 18 1 9.9805 -0.9865 3.7032 19 6 11.9671 -1.3657 3.0203 20 7 12.7161 -1.7802 2.0220 21 14 12.7610 -0.8325 4.6250 22 1 12.2644 -1.6893 5.7315 23 1 14.2358 -0.9682 4.5167 24 1 12.4139 0.5845 4.9020 25 6 3.5778 -1.2022 -0.0054 26 6 4.3287 -2.5087 -0.0118 27 6 2.1968 -1.1985 -0.0002 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6549 2.1328 -0.0004 32 1 4.5104 2.8240 -1.0264 33 1 3.7376 3.2674 0.5146 34 1 5.2809 2.3805 0.5157 35 1 6.1563 0.5204 -0.6592 36 1 7.6481 -1.7525 3.6074 37 1 6.7876 -2.6508 2.3342 38 1 8.3262 -3.2731 2.9776 39 1 9.9492 -3.8452 2.1159 40 1 9.8500 -3.5278 0.3673 41 1 11.3958 -3.3160 1.2235 42 1 13.6810 -1.8081 2.1184 43 1 4.3808 -2.9028 1.0032 44 1 3.8108 -3.2224 -0.6524 45 1 5.3378 -2.3461 -0.3905 46 1 1.6550 -2.1328 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131937838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:39 Heat of formation + Delta-G solvation = -53.868163 kcal Electronic energy + Delta-G solvation = -27213.516504 eV Core-core repulsion = 23488.834974 eV Total energy + Delta-G solvation = -3724.681530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33414 -40.75349 -39.30706 -37.59007 -36.25821 -34.75831 -34.50800 -33.09673 -31.46775 -28.89969 -28.16253 -27.68029 -27.57060 -27.30918 -25.44025 -22.86415 -21.95910 -21.25834 -20.83195 -19.02763 -18.63467 -18.26376 -17.60599 -17.51979 -16.83435 -16.43401 -16.16109 -15.42095 -15.15477 -15.05311 -15.01600 -14.70719 -14.49814 -14.14363 -14.03640 -13.98245 -13.90211 -13.63496 -13.53871 -13.40345 -13.20958 -13.01300 -12.77249 -12.73105 -12.66420 -12.31973 -12.22429 -12.19765 -12.10106 -12.08796 -12.00665 -11.25902 -10.99441 -10.58604 -10.34152 -9.56029 -9.51507 -9.12326 -8.18725 -6.35429 0.05438 0.40321 0.53434 1.34979 1.41800 1.43404 1.51353 2.11494 2.38188 2.62835 2.70355 3.09443 3.29969 3.78740 3.81423 3.94215 4.33442 4.36428 4.39262 4.44666 4.47611 4.68111 4.69699 4.70712 4.71085 4.74406 4.76918 4.84626 4.91519 4.95573 4.97365 5.01828 5.10376 5.18581 5.26063 5.35996 5.37040 5.41786 5.47437 5.54783 5.59660 5.67076 5.86681 6.00575 6.07218 6.08957 6.48031 6.65160 6.77365 6.98410 7.35359 8.85611 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025133 B = 0.003016 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.816732 B = 9281.076743 C = 9612.658317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.092 4.092 5 C -0.116 4.116 6 C 0.100 3.900 7 N -0.638 5.638 8 C 0.518 3.482 9 O -0.504 6.504 10 C 0.485 3.515 11 O -0.567 6.567 12 N -0.560 5.560 13 C 0.075 3.925 14 C 0.259 3.741 15 H 0.023 0.977 16 C -0.135 4.135 17 C -0.545 4.545 18 H 0.056 0.944 19 C 0.021 3.979 20 N -0.913 5.913 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.277 1.277 25 C -0.082 4.082 26 C -0.107 4.107 27 C -0.121 4.121 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.422 0.578 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.025 0.975 41 H 0.075 0.925 42 H 0.267 0.733 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.956 2.560 -4.676 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.094 4.094 5 C -0.173 4.173 6 C 0.008 3.992 7 N -0.286 5.286 8 C 0.301 3.699 9 O -0.379 6.379 10 C 0.268 3.732 11 O -0.448 6.448 12 N -0.290 5.290 13 C -0.066 4.066 14 C 0.158 3.842 15 H 0.041 0.959 16 C -0.193 4.193 17 C -0.583 4.583 18 H 0.075 0.925 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.084 4.084 26 C -0.163 4.163 27 C -0.140 4.140 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.797 2.401 -4.494 24.337 hybrid contribution 1.463 0.461 0.416 1.589 sum -22.335 2.862 -4.078 22.884 Atomic orbital electron populations 1.20827 0.88720 1.03782 1.03330 1.20293 0.97791 0.92440 0.97923 1.21046 0.92019 0.99035 1.01560 1.20100 0.94786 0.94016 1.00494 1.20802 0.99591 0.93453 1.03426 1.17563 0.81242 0.94089 1.06289 1.42977 1.05202 1.47728 1.32671 1.20026 0.87769 0.79907 0.82180 1.90626 1.69833 1.43397 1.34086 1.20282 0.88451 0.81798 0.82709 1.90687 1.69872 1.44911 1.39295 1.48224 1.09403 1.40728 1.30659 1.22284 0.97662 0.96074 0.90620 1.18811 0.73835 0.94693 0.96877 0.95930 1.21912 1.03209 0.96269 0.97906 1.21469 0.92349 1.45184 0.99336 0.92531 1.25667 0.97413 0.94740 1.00108 1.69983 1.05683 1.46795 1.32647 0.85518 0.77279 0.78722 0.79580 1.18985 1.20462 1.20284 1.20024 0.94793 0.94085 0.99490 1.20829 0.98569 0.94257 1.02689 1.20986 0.91960 0.99165 1.01873 0.89920 0.90768 0.90399 0.83197 0.89486 0.89388 0.93151 0.73912 0.93265 0.87409 0.90955 0.93371 0.95559 0.90638 0.92352 0.90637 0.89757 0.94339 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 71.23 0.71 -0.41 16 2 C -0.08 -1.44 5.88 -19.84 -0.12 -1.55 16 3 C -0.12 -2.10 9.35 22.25 0.21 -1.89 16 4 C -0.09 -2.03 5.90 -19.73 -0.12 -2.14 16 5 C -0.12 -2.16 9.66 71.23 0.69 -1.47 16 6 C 0.10 2.67 5.84 38.21 0.22 2.89 16 7 N -0.64 -18.89 3.92 -304.84 -1.19 -20.08 16 8 C 0.52 18.36 5.86 87.24 0.51 18.87 16 9 O -0.50 -18.03 10.24 -3.32 -0.03 -18.07 16 10 C 0.49 20.99 7.73 87.24 0.67 21.66 16 11 O -0.57 -27.38 15.82 -3.28 -0.05 -27.43 16 12 N -0.56 -25.25 2.75 -828.48 -2.28 -27.53 16 13 C 0.08 2.86 8.83 127.77 1.13 3.99 16 14 C 0.26 13.57 2.63 44.25 0.12 13.68 16 15 H 0.02 1.38 6.90 -2.39 -0.02 1.36 16 16 C -0.13 -6.47 8.96 71.98 0.64 -5.83 16 17 C -0.55 -30.08 8.37 25.60 0.21 -29.87 16 18 H 0.06 3.10 7.65 -2.91 -0.02 3.07 16 19 C 0.02 1.15 5.30 84.65 0.45 1.60 16 20 N -0.91 -51.88 11.32 21.44 0.24 -51.64 16 21 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 C -0.08 -2.06 5.49 -19.73 -0.11 -2.17 16 26 C -0.11 -2.68 8.22 71.24 0.59 -2.10 16 27 C -0.12 -2.42 9.38 22.25 0.21 -2.21 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 30 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.15 1.82 8.06 -2.92 -0.02 1.80 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 34 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 35 H 0.42 11.77 8.14 -92.70 -0.75 11.02 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.11 3.73 5.22 -4.20 -0.02 3.71 16 38 H 0.07 2.65 6.43 -2.38 -0.02 2.64 16 39 H 0.05 2.13 6.66 -2.39 -0.02 2.11 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 42 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 43 H 0.08 2.03 7.13 -2.38 -0.02 2.02 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.10 6.12 -2.39 -0.01 1.08 16 46 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -66.41 369.47 4.97 -61.44 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.24 Total: 25.01 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.02 Total: 13.05 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -3.23 Total: -99.25 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.09 Total: -45.50 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -66.41 4.97 -61.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131937838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.572 kcal (2) G-P(sol) polarization free energy of solvation -66.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds