Wall clock time and date at job start Tue Mar 31 2020 12:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38241 * 120.00030 * 2 1 4 4 C 1.38229 * 119.99776 * 179.72602 * 3 2 1 5 5 C 1.38234 * 120.00481 * 0.25671 * 4 3 2 6 6 C 1.50698 * 120.00554 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.46788 * 15.45546 * 6 5 4 8 8 C 1.52997 * 109.47333 * 255.45434 * 6 5 4 9 9 N 1.46502 * 109.47329 * 177.47585 * 8 6 5 10 10 C 1.34775 * 120.00290 * 173.56611 * 9 8 6 11 11 O 1.21682 * 119.99995 * 359.97438 * 10 9 8 12 12 C 1.46372 * 119.99929 * 180.02562 * 10 9 8 13 13 H 1.08002 * 120.00306 * 359.97438 * 12 10 9 14 14 C 1.40052 * 119.99675 * 179.97438 * 12 10 9 15 15 N 1.30671 * 120.00156 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99820 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46954 * 90.00068 * 16 14 12 18 18 H 1.48495 * 109.47166 * 210.00128 * 16 14 12 19 19 H 1.48502 * 109.47044 * 330.00362 * 16 14 12 20 20 N 1.46892 * 109.47390 * 135.45101 * 6 5 4 21 21 C 1.47012 * 111.00378 * 215.57144 * 20 6 5 22 22 C 1.53102 * 109.26142 * 177.60743 * 21 20 6 23 23 O 1.43021 * 109.25685 * 56.84415 * 22 21 20 24 24 C 1.43014 * 113.73935 * 301.33421 * 23 22 21 25 25 C 1.47015 * 111.00151 * 91.93489 * 20 6 5 26 26 C 1.38240 * 119.99603 * 359.97438 * 5 4 3 27 27 C 1.38229 * 120.00189 * 0.02562 * 26 5 4 28 28 H 1.08999 * 109.47525 * 90.00132 * 1 2 3 29 29 H 1.08999 * 109.47221 * 210.00418 * 1 2 3 30 30 H 1.09009 * 109.47437 * 329.99465 * 1 2 3 31 31 H 1.07996 * 119.99561 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00111 * 180.27449 * 4 3 2 33 33 H 1.09000 * 109.47050 * 297.47578 * 8 6 5 34 34 H 1.08999 * 109.47196 * 57.47892 * 8 6 5 35 35 H 0.97002 * 119.99517 * 353.56198 * 9 8 6 36 36 H 0.96999 * 119.99524 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.50294 * 297.53988 * 21 20 6 38 38 H 1.08998 * 109.50514 * 57.67264 * 21 20 6 39 39 H 1.09006 * 109.50465 * 296.91573 * 22 21 20 40 40 H 1.08994 * 109.54317 * 176.79957 * 22 21 20 41 41 H 1.08994 * 109.50465 * 298.73074 * 24 23 22 42 42 H 1.09001 * 109.53755 * 178.62393 * 24 23 22 43 43 H 1.09002 * 109.50575 * 302.32824 * 25 20 6 44 44 H 1.08998 * 109.50510 * 62.45621 * 25 20 6 45 45 H 1.08003 * 119.99854 * 179.97438 * 26 5 4 46 46 H 1.08001 * 119.99906 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1971 0.0057 5 6 4.2717 0.0000 0.0061 6 6 5.7786 0.0000 0.0129 7 1 6.1407 0.9899 0.2907 8 6 6.2950 -0.3591 -1.3818 9 7 7.7588 -0.3004 -1.3908 10 6 8.4428 -0.7046 -2.4794 11 8 7.8446 -1.1188 -3.4547 12 6 9.9054 -0.6464 -2.4880 13 1 10.4364 -0.2792 -1.6222 14 6 10.6162 -1.0670 -3.6191 15 7 9.9737 -1.5108 -4.6669 16 14 12.4827 -0.9920 -3.6305 17 1 13.0325 -2.2718 -3.1155 18 1 12.9608 -0.7709 -5.0188 19 1 12.9385 0.1260 -2.7659 20 7 6.2639 -0.9893 0.9844 21 6 7.4891 -0.5196 1.6474 22 6 7.9256 -1.5511 2.6912 23 8 8.1064 -2.8189 2.0545 24 6 6.9326 -3.3067 1.3993 25 6 6.4861 -2.2931 0.3424 26 6 3.5804 -1.1971 0.0013 27 6 2.1982 -1.1971 -0.0045 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6581 2.1324 0.0004 32 1 4.1205 2.1324 0.0102 33 1 5.9702 -1.3668 -1.6412 34 1 5.8986 0.3490 -2.1095 35 1 8.2356 0.0295 -0.6131 36 1 10.4661 -1.8017 -5.4503 37 1 8.2788 -0.3948 0.9066 38 1 7.2948 0.4344 2.1375 39 1 7.1588 -1.6366 3.4612 40 1 8.8644 -1.2349 3.1458 41 1 6.1371 -3.4433 2.1317 42 1 7.1528 -4.2602 0.9190 43 1 5.5596 -2.6337 -0.1200 44 1 7.2598 -2.1966 -0.4192 45 1 4.1205 -2.1325 0.0011 46 1 1.6582 -2.1325 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132340358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:36 Heat of formation + Delta-G solvation = -39.149186 kcal Electronic energy + Delta-G solvation = -27583.202334 eV Core-core repulsion = 23859.159067 eV Total energy + Delta-G solvation = -3724.043267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.36073 -38.92767 -37.45904 -36.06413 -32.97589 -32.85728 -32.09241 -31.29088 -30.66108 -29.53666 -26.84677 -26.35913 -25.01857 -24.18839 -22.46505 -22.23478 -20.55983 -19.85972 -19.69848 -17.38645 -16.65732 -16.27631 -15.89028 -15.48875 -15.35177 -14.95914 -14.77958 -14.70785 -14.54104 -14.25105 -13.99802 -13.77788 -13.53998 -13.26790 -12.92743 -12.48680 -12.47365 -12.21714 -12.18191 -11.97528 -11.71132 -11.42069 -11.26572 -11.11801 -11.03386 -10.89250 -10.82398 -10.62489 -10.48339 -10.29604 -10.23168 -9.47895 -8.87772 -8.82299 -8.44387 -8.23001 -7.65967 -7.49987 -6.20992 -4.66797 1.40008 1.51075 3.13376 3.20096 3.23196 3.69310 3.95710 4.08029 4.09022 4.56263 4.57830 4.81131 4.87940 4.98854 5.04625 5.09727 5.12959 5.19672 5.28904 5.33386 5.38567 5.46673 5.48301 5.52110 5.58539 5.62658 5.70575 5.71166 5.75182 5.82880 5.96479 6.02760 6.11572 6.16950 6.25891 6.36612 6.41101 6.52009 6.64590 6.72191 7.07147 7.08755 7.15031 7.29250 7.40865 7.84550 8.00955 8.27699 9.00154 9.45039 10.56568 10.74680 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003873 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.191315 B = 7228.202061 C = 8432.185974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.122 4.122 4 C -0.110 4.110 5 C -0.059 4.059 6 C 0.110 3.890 7 H 0.085 0.915 8 C 0.111 3.889 9 N -0.768 5.768 10 C 0.554 3.446 11 O -0.579 6.579 12 C -0.544 4.544 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.265 1.265 20 N -0.522 5.522 21 C 0.010 3.990 22 C 0.068 3.932 23 O -0.382 6.382 24 C 0.067 3.933 25 C -0.005 4.005 26 C -0.097 4.097 27 C -0.123 4.123 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.377 0.623 36 H 0.268 0.732 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 2.333 14.026 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.061 4.061 6 C 0.001 3.999 7 H 0.103 0.897 8 C -0.015 4.015 9 N -0.427 5.427 10 C 0.359 3.641 11 O -0.461 6.461 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 N -0.246 5.246 21 C -0.118 4.118 22 C -0.009 4.009 23 O -0.300 6.300 24 C -0.010 4.010 25 C -0.132 4.132 26 C -0.115 4.115 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.212 0.788 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.144 0.856 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.221 1.789 13.462 18.953 hybrid contribution 1.452 0.562 -0.325 1.590 sum -11.769 2.350 13.137 17.794 Atomic orbital electron populations 1.20760 0.91593 1.02396 1.02105 1.19866 0.95782 0.93346 1.00538 1.20909 0.93998 0.97310 1.01804 1.20970 0.94118 0.97415 1.00321 1.19582 0.94127 0.93252 0.99108 1.20890 0.91272 0.96127 0.91583 0.89655 1.21492 0.84226 1.01505 0.94279 1.46491 1.03818 1.72741 1.19658 1.18220 0.88216 0.77213 0.80482 1.90606 1.70683 1.50604 1.34223 1.20852 0.89720 1.45989 1.01542 0.91605 1.25695 0.99881 0.92882 0.94705 1.70018 1.36444 1.30100 1.02986 0.86381 0.83143 0.79291 0.78008 1.19666 1.20453 1.18928 1.62435 1.29800 1.02629 1.29768 1.22986 0.92010 0.98943 0.97887 1.22592 1.01173 0.83321 0.93835 1.88010 1.35174 1.35522 1.71314 1.22647 0.87565 0.96685 0.94068 1.23250 1.02706 0.89562 0.97702 1.21197 0.93752 0.98237 0.98326 1.20999 0.94213 0.97316 1.01530 0.91394 0.91794 0.91839 0.86412 0.86253 0.91898 0.93205 0.78826 0.92096 0.92526 0.89958 0.92790 0.88710 0.93025 0.88705 0.89747 0.90099 0.85580 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.10 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 4 C -0.11 -1.38 9.67 -39.59 -0.38 -1.76 16 5 C -0.06 -0.83 4.95 -104.62 -0.52 -1.34 16 6 C 0.11 1.62 2.32 -68.87 -0.16 1.46 16 7 H 0.09 1.19 7.44 -51.92 -0.39 0.80 16 8 C 0.11 2.13 4.29 -4.04 -0.02 2.11 16 9 N -0.77 -16.89 3.86 -61.72 -0.24 -17.13 16 10 C 0.55 15.67 7.73 -12.99 -0.10 15.56 16 11 O -0.58 -18.71 15.00 5.20 0.08 -18.63 16 12 C -0.54 -15.39 9.54 -35.63 -0.34 -15.73 16 13 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 14 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -23.05 11.83 55.55 0.66 -22.40 16 16 Si 0.91 20.29 29.56 -169.99 -5.02 15.27 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 N -0.52 -7.36 4.28 -227.73 -0.97 -8.33 16 21 C 0.01 0.14 5.24 -3.71 -0.02 0.12 16 22 C 0.07 0.85 7.01 37.21 0.26 1.11 16 23 O -0.38 -5.89 10.83 -35.23 -0.38 -6.28 16 24 C 0.07 0.94 7.01 37.21 0.26 1.20 16 25 C 0.00 -0.07 3.95 -3.71 -0.01 -0.09 16 26 C -0.10 -1.31 9.22 -39.58 -0.36 -1.67 16 27 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.09 -51.92 -0.42 0.04 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.32 8.00 -52.49 -0.42 0.90 16 33 H 0.06 1.31 6.21 -51.93 -0.32 0.98 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.38 7.47 5.47 -40.82 -0.22 7.24 16 36 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 37 H 0.06 0.87 5.30 -51.93 -0.28 0.60 16 38 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.24 4.70 -51.93 -0.24 0.99 16 44 H 0.08 1.59 5.57 -51.93 -0.29 1.30 16 45 H 0.13 1.67 4.81 -52.48 -0.25 1.42 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -34.54 361.18 -9.55 -44.09 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.60 Total: 10.51 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.51 Total: -2.55 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.55 Total: -47.86 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.30 Total: -24.91 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.54 -9.55 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132340358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.945 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds