Wall clock time and date at job start Tue Mar 31 2020 12:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38241 * 120.00030 * 2 1 4 4 C 1.38229 * 119.99776 * 179.72602 * 3 2 1 5 5 C 1.38234 * 120.00481 * 0.25671 * 4 3 2 6 6 C 1.50698 * 120.00554 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.46788 * 15.45546 * 6 5 4 8 8 C 1.52997 * 109.47333 * 255.45434 * 6 5 4 9 9 N 1.46502 * 109.47329 * 177.47585 * 8 6 5 10 10 C 1.34775 * 120.00290 * 173.56611 * 9 8 6 11 11 O 1.21682 * 119.99995 * 359.97438 * 10 9 8 12 12 C 1.46372 * 119.99929 * 180.02562 * 10 9 8 13 13 H 1.08002 * 120.00306 * 359.97438 * 12 10 9 14 14 C 1.40052 * 119.99675 * 179.97438 * 12 10 9 15 15 N 1.30671 * 120.00156 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99820 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46954 * 90.00068 * 16 14 12 18 18 H 1.48495 * 109.47166 * 210.00128 * 16 14 12 19 19 H 1.48502 * 109.47044 * 330.00362 * 16 14 12 20 20 N 1.46892 * 109.47390 * 135.45101 * 6 5 4 21 21 C 1.47012 * 111.00378 * 215.57144 * 20 6 5 22 22 C 1.53102 * 109.26142 * 177.60743 * 21 20 6 23 23 O 1.43021 * 109.25685 * 56.84415 * 22 21 20 24 24 C 1.43014 * 113.73935 * 301.33421 * 23 22 21 25 25 C 1.47015 * 111.00151 * 91.93489 * 20 6 5 26 26 C 1.38240 * 119.99603 * 359.97438 * 5 4 3 27 27 C 1.38229 * 120.00189 * 0.02562 * 26 5 4 28 28 H 1.08999 * 109.47525 * 90.00132 * 1 2 3 29 29 H 1.08999 * 109.47221 * 210.00418 * 1 2 3 30 30 H 1.09009 * 109.47437 * 329.99465 * 1 2 3 31 31 H 1.07996 * 119.99561 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00111 * 180.27449 * 4 3 2 33 33 H 1.09000 * 109.47050 * 297.47578 * 8 6 5 34 34 H 1.08999 * 109.47196 * 57.47892 * 8 6 5 35 35 H 0.97002 * 119.99517 * 353.56198 * 9 8 6 36 36 H 0.96999 * 119.99524 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.50294 * 297.53988 * 21 20 6 38 38 H 1.08998 * 109.50514 * 57.67264 * 21 20 6 39 39 H 1.09006 * 109.50465 * 296.91573 * 22 21 20 40 40 H 1.08994 * 109.54317 * 176.79957 * 22 21 20 41 41 H 1.08994 * 109.50465 * 298.73074 * 24 23 22 42 42 H 1.09001 * 109.53755 * 178.62393 * 24 23 22 43 43 H 1.09002 * 109.50575 * 302.32824 * 25 20 6 44 44 H 1.08998 * 109.50510 * 62.45621 * 25 20 6 45 45 H 1.08003 * 119.99854 * 179.97438 * 26 5 4 46 46 H 1.08001 * 119.99906 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1971 0.0057 5 6 4.2717 0.0000 0.0061 6 6 5.7786 0.0000 0.0129 7 1 6.1407 0.9899 0.2907 8 6 6.2950 -0.3591 -1.3818 9 7 7.7588 -0.3004 -1.3908 10 6 8.4428 -0.7046 -2.4794 11 8 7.8446 -1.1188 -3.4547 12 6 9.9054 -0.6464 -2.4880 13 1 10.4364 -0.2792 -1.6222 14 6 10.6162 -1.0670 -3.6191 15 7 9.9737 -1.5108 -4.6669 16 14 12.4827 -0.9920 -3.6305 17 1 13.0325 -2.2718 -3.1155 18 1 12.9608 -0.7709 -5.0188 19 1 12.9385 0.1260 -2.7659 20 7 6.2639 -0.9893 0.9844 21 6 7.4891 -0.5196 1.6474 22 6 7.9256 -1.5511 2.6912 23 8 8.1064 -2.8189 2.0545 24 6 6.9326 -3.3067 1.3993 25 6 6.4861 -2.2931 0.3424 26 6 3.5804 -1.1971 0.0013 27 6 2.1982 -1.1971 -0.0045 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6581 2.1324 0.0004 32 1 4.1205 2.1324 0.0102 33 1 5.9702 -1.3668 -1.6412 34 1 5.8986 0.3490 -2.1095 35 1 8.2356 0.0295 -0.6131 36 1 10.4661 -1.8017 -5.4503 37 1 8.2788 -0.3948 0.9066 38 1 7.2948 0.4344 2.1375 39 1 7.1588 -1.6366 3.4612 40 1 8.8644 -1.2349 3.1458 41 1 6.1371 -3.4433 2.1317 42 1 7.1528 -4.2602 0.9190 43 1 5.5596 -2.6337 -0.1200 44 1 7.2598 -2.1966 -0.4192 45 1 4.1205 -2.1325 0.0011 46 1 1.6582 -2.1325 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132340358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:35 Heat of formation + Delta-G solvation = -63.402526 kcal Electronic energy + Delta-G solvation = -27584.254038 eV Core-core repulsion = 23859.159067 eV Total energy + Delta-G solvation = -3725.094971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57466 -39.93330 -39.28652 -37.53196 -34.85240 -34.10922 -33.93211 -32.36688 -31.64348 -30.79486 -28.72874 -27.33971 -26.59874 -25.31180 -23.50207 -23.39121 -21.72472 -21.55427 -21.12750 -19.28093 -17.82014 -17.64491 -17.32471 -16.97231 -16.64217 -16.16822 -16.06158 -15.96121 -15.78998 -15.61566 -15.54159 -14.89892 -14.60569 -14.41917 -14.31939 -14.17882 -13.71771 -13.58932 -13.17567 -13.03381 -13.01987 -12.84176 -12.73500 -12.69118 -12.66704 -12.26855 -12.11505 -12.01201 -11.86257 -11.76584 -11.38174 -10.97263 -10.60937 -9.97466 -9.80500 -9.71604 -9.38373 -9.21620 -8.33213 -6.90452 0.43227 0.56376 1.36754 1.38397 1.53436 2.20832 2.42432 2.60549 2.85948 3.00421 3.04289 3.57061 3.70082 3.87194 3.87890 3.98115 4.07229 4.09995 4.13744 4.19248 4.24528 4.32323 4.39445 4.51362 4.53240 4.62739 4.64366 4.70212 4.79445 4.85850 4.87417 4.89854 4.98571 5.03255 5.09014 5.23573 5.26711 5.31954 5.54238 5.69414 5.75261 5.79818 5.83996 5.98417 6.11004 6.17800 6.18189 6.21587 6.82219 7.43209 8.43094 8.62308 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003873 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.191315 B = 7228.202061 C = 8432.185974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.080 4.080 6 C 0.126 3.874 7 H 0.098 0.902 8 C 0.119 3.881 9 N -0.751 5.751 10 C 0.540 3.460 11 O -0.631 6.631 12 C -0.572 4.572 13 H 0.083 0.917 14 C 0.030 3.970 15 N -0.820 5.820 16 Si 0.996 3.004 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.249 1.249 20 N -0.509 5.509 21 C 0.007 3.993 22 C 0.066 3.934 23 O -0.406 6.406 24 C 0.070 3.930 25 C 0.002 3.998 26 C -0.112 4.112 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.390 0.610 36 H 0.275 0.725 37 H 0.032 0.968 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.034 0.966 45 H 0.120 0.880 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 3.414 16.294 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.082 4.082 6 C 0.017 3.983 7 H 0.116 0.884 8 C -0.007 4.007 9 N -0.409 5.409 10 C 0.344 3.656 11 O -0.518 6.518 12 C -0.608 4.608 13 H 0.101 0.899 14 C -0.186 4.186 15 N -0.449 5.449 16 Si 0.815 3.185 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.172 1.172 20 N -0.233 5.233 21 C -0.121 4.121 22 C -0.010 4.010 23 O -0.325 6.325 24 C -0.006 4.006 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.150 4.150 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.227 0.773 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.052 0.948 45 H 0.137 0.863 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.467 2.896 15.799 20.961 hybrid contribution 1.395 0.238 -1.002 1.734 sum -12.073 3.135 14.797 19.353 Atomic orbital electron populations 1.20816 0.89317 1.03698 1.02876 1.20279 0.97530 0.92922 0.98894 1.21248 0.93667 0.98555 1.00964 1.21194 0.94956 0.97360 1.00013 1.19534 0.93205 0.94183 1.01232 1.20748 0.92305 0.96669 0.88561 0.88366 1.21523 0.82255 0.99756 0.97131 1.46104 1.05122 1.71171 1.18468 1.18569 0.89004 0.76935 0.81043 1.90555 1.71730 1.52988 1.36545 1.21369 0.90211 1.46563 1.02694 0.89925 1.26955 1.06346 0.91547 0.93704 1.70184 1.39419 1.31196 1.04092 0.85042 0.74787 0.80017 0.78611 1.18669 1.19588 1.17182 1.62537 1.30103 1.01883 1.28778 1.23123 0.90708 1.00706 0.97593 1.22795 1.02823 0.81828 0.93580 1.87976 1.36014 1.36904 1.71612 1.22672 0.87886 0.96084 0.94008 1.23113 1.01245 0.90997 0.97247 1.21265 0.94690 0.97916 0.99125 1.21256 0.93716 0.98656 1.01324 0.90749 0.90758 0.90370 0.83967 0.84993 0.94100 0.95164 0.77308 0.91532 0.95026 0.87214 0.91027 0.86797 0.90822 0.88572 0.89527 0.94800 0.86272 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 2 C -0.10 -1.97 5.88 -19.87 -0.12 -2.09 16 3 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 4 C -0.12 -2.79 9.67 22.27 0.22 -2.57 16 5 C -0.08 -2.21 4.95 -19.87 -0.10 -2.31 16 6 C 0.13 3.74 2.32 44.17 0.10 3.84 16 7 H 0.10 2.65 7.44 -2.38 -0.02 2.63 16 8 C 0.12 4.82 4.29 86.38 0.37 5.19 16 9 N -0.75 -34.56 3.86 -467.42 -1.80 -36.36 16 10 C 0.54 32.01 7.73 86.36 0.67 32.68 16 11 O -0.63 -43.27 15.00 -4.29 -0.06 -43.33 16 12 C -0.57 -33.13 9.54 24.83 0.24 -32.90 16 13 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 14 C 0.03 1.69 5.50 85.31 0.47 2.16 16 15 N -0.82 -50.99 11.83 21.84 0.26 -50.73 16 16 Si 1.00 41.75 29.56 68.60 2.03 43.78 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 20 N -0.51 -14.19 4.28 -874.39 -3.74 -17.93 16 21 C 0.01 0.18 5.24 86.32 0.45 0.63 16 22 C 0.07 1.53 7.01 72.02 0.50 2.04 16 23 O -0.41 -12.25 10.83 -148.98 -1.61 -13.86 16 24 C 0.07 1.95 7.01 72.01 0.50 2.45 16 25 C 0.00 0.07 3.95 86.31 0.34 0.41 16 26 C -0.11 -3.01 9.22 22.27 0.21 -2.80 16 27 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 31 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.13 2.71 8.00 -2.91 -0.02 2.69 16 33 H 0.04 1.83 6.21 -2.39 -0.01 1.82 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.39 15.88 5.47 -92.71 -0.51 15.37 16 36 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 37 H 0.03 0.97 5.30 -2.39 -0.01 0.96 16 38 H 0.11 2.17 8.01 -2.39 -0.02 2.16 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.09 2.68 4.70 -2.39 -0.01 2.67 16 44 H 0.03 1.41 5.57 -2.39 -0.01 1.40 16 45 H 0.12 3.26 4.81 -2.91 -0.01 3.25 16 46 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -78.85 361.18 0.56 -78.29 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: 0.49 Total: 39.43 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.00 Total: 0.71 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -5.28 Total: -105.02 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -1.68 Total: -57.20 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -78.85 0.56 -78.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132340358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.889 kcal (2) G-P(sol) polarization free energy of solvation -78.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds