Wall clock time and date at job start Tue Mar 31 2020 12:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99491 * 2 1 4 4 H 1.48504 * 109.47008 * 239.99732 * 3 2 1 5 5 H 1.48499 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47254 * 119.99993 * 3 2 1 7 7 C 1.37875 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47175 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.35985 * 117.00127 * 180.02562 * 11 10 9 13 13 C 1.38793 * 120.49800 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.44899 * 179.97438 * 13 12 11 15 15 C 1.38081 * 119.35675 * 359.97438 * 14 13 12 16 16 N 1.31960 * 120.94943 * 359.97438 * 15 14 13 17 17 C 1.32272 * 121.69603 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72873 * 180.02562 * 17 16 15 19 19 C 1.34783 * 120.00065 * 359.97438 * 18 17 16 20 20 O 1.21283 * 119.99880 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00113 * 179.97438 * 19 18 17 22 22 C 1.52993 * 109.46974 * 180.02562 * 21 19 18 23 23 C 1.54262 * 110.03530 * 292.90591 * 22 21 19 24 24 C 1.54956 * 104.16226 * 217.13913 * 23 22 21 25 25 C 1.54890 * 102.78147 * 37.88705 * 24 23 22 26 26 C 1.53880 * 110.02809 * 175.68885 * 22 21 19 27 27 H 0.96995 * 120.00545 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47079 * 59.99501 * 9 7 2 29 29 H 1.09001 * 109.46724 * 299.99835 * 9 7 2 30 30 H 1.09004 * 109.47159 * 59.99997 * 10 9 7 31 31 H 1.09001 * 109.47525 * 299.99793 * 10 9 7 32 32 H 1.08002 * 120.77284 * 0.24595 * 13 12 11 33 33 H 1.08001 * 120.31757 * 180.02562 * 14 13 12 34 34 H 1.07996 * 119.53007 * 179.97438 * 15 14 13 35 35 H 0.97005 * 120.00328 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.47030 * 300.00534 * 21 19 18 37 37 H 1.08999 * 109.47075 * 59.99585 * 21 19 18 38 38 H 1.09000 * 110.01602 * 54.30421 * 22 21 19 39 39 H 1.09006 * 110.48319 * 335.78987 * 23 22 21 40 40 H 1.08997 * 110.48516 * 98.42535 * 23 22 21 41 41 H 1.09003 * 110.72012 * 279.57261 * 24 23 22 42 42 H 1.09006 * 110.92362 * 156.29749 * 24 23 22 43 43 H 1.08991 * 110.48986 * 203.40633 * 25 24 23 44 44 H 1.09004 * 110.59833 * 80.81543 * 25 24 23 45 45 H 1.08997 * 110.03211 * 238.56425 * 26 22 21 46 46 H 1.08998 * 110.03622 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 8 1.5311 -4.8995 0.0011 12 6 2.2718 -6.0399 0.0018 13 6 3.6584 -5.9793 0.0023 14 6 4.3722 -7.1694 0.0035 15 6 3.6883 -8.3689 0.0046 16 7 2.3690 -8.3980 0.0050 17 6 1.6494 -7.2881 0.0040 18 7 0.2559 -7.3667 0.0051 19 6 -0.3512 -8.5700 0.0067 20 8 0.3134 -9.5845 0.0067 21 6 -1.8559 -8.6549 0.0084 22 6 -2.2838 -10.1237 0.0107 23 6 -1.8915 -10.7905 -1.3239 24 6 -3.0653 -11.7563 -1.6247 25 6 -4.3011 -10.9517 -1.1507 26 6 -3.8152 -10.2264 0.1211 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8721 -3.6043 -0.8895 32 1 4.1699 -5.0281 0.0063 33 1 5.4521 -7.1574 0.0044 34 1 4.2409 -9.2968 0.0051 35 1 -0.2757 -6.5553 0.0047 36 1 -2.2466 -8.1615 0.8984 37 1 -2.2485 -8.1629 -0.8815 38 1 -1.8135 -10.6481 0.8425 39 1 -1.8014 -10.0428 -2.1120 40 1 -0.9592 -11.3445 -1.2141 41 1 -2.9622 -12.6785 -1.0527 42 1 -3.1297 -11.9705 -2.6915 43 1 -5.1263 -11.6236 -0.9150 44 1 -4.6029 -10.2299 -1.9098 45 1 -4.0880 -10.8014 1.0060 46 1 -4.2535 -9.2297 0.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170693342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:33 Heat of formation + Delta-G solvation = -55.780382 kcal Electronic energy + Delta-G solvation = -25949.231804 eV Core-core repulsion = 22224.467354 eV Total energy + Delta-G solvation = -3724.764450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.88851 -39.58789 -38.04396 -37.60113 -34.74626 -33.48225 -31.99259 -31.44505 -30.51173 -29.08541 -28.80307 -26.18040 -25.39697 -23.47930 -22.74783 -21.14655 -20.85807 -20.29219 -19.62817 -18.34205 -17.53039 -17.14047 -16.21287 -16.09289 -15.83194 -15.44066 -15.34148 -15.05773 -14.74708 -14.57443 -13.99637 -13.88336 -13.66173 -13.47947 -13.12059 -12.84266 -12.40907 -12.22829 -12.02612 -11.91882 -11.39188 -11.24521 -11.13431 -11.07685 -10.98558 -10.93187 -10.77747 -10.69868 -10.64832 -10.55822 -10.13638 -10.05269 -9.77932 -9.43235 -9.20323 -8.98246 -8.52963 -7.64739 -6.18778 -4.23891 1.22185 1.45553 2.77262 2.93972 3.23119 3.27828 3.28902 3.53237 4.02342 4.31254 4.33196 4.43261 4.50185 4.61118 4.86160 4.95626 5.01731 5.11400 5.14013 5.17996 5.28424 5.30147 5.41638 5.47180 5.48211 5.52208 5.62370 5.66964 5.74925 5.84940 5.87708 5.89154 5.94586 6.06785 6.14182 6.19222 6.19668 6.33799 6.37853 6.53547 6.64684 7.30745 7.34003 7.51560 7.63471 7.84766 8.09889 8.13495 8.39742 8.81103 9.41073 10.92616 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.002658 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.286789 B =10531.180951 C =12379.614677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.066 3.934 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.329 3.671 18 N -0.655 5.655 19 C 0.502 3.498 20 O -0.478 6.478 21 C -0.135 4.135 22 C -0.076 4.076 23 C -0.114 4.114 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.122 4.122 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.424 0.576 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -19.517 -0.853 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.014 3.986 13 C -0.175 4.175 14 C -0.183 4.183 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.096 3.904 18 N -0.303 5.303 19 C 0.288 3.712 20 O -0.348 6.348 21 C -0.175 4.175 22 C -0.094 4.094 23 C -0.152 4.152 24 C -0.165 4.165 25 C -0.163 4.163 26 C -0.160 4.160 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.261 0.739 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.218 -20.924 -0.846 21.187 hybrid contribution 0.962 2.473 0.021 2.654 sum -2.256 -18.451 -0.825 18.607 Atomic orbital electron populations 1.69947 1.06104 1.27215 1.49429 1.24975 0.94914 0.99399 0.94776 0.86545 0.79525 0.82540 0.78766 1.20062 1.21068 1.20055 1.20909 0.93029 0.90147 1.52645 0.92393 1.19119 0.94120 0.88898 0.98870 1.23389 0.97250 0.80329 0.99810 1.86098 1.36243 1.12903 1.87612 1.19619 0.91149 0.87163 1.00652 1.21605 0.92282 1.00333 1.03285 1.21881 1.01164 0.92555 1.02656 1.22406 0.88874 0.97843 0.99101 1.67629 1.07798 1.26916 1.13543 1.17856 0.85066 0.86882 1.00594 1.43596 1.03665 1.10673 1.72354 1.20940 0.90702 0.82942 0.76586 1.90768 1.66088 1.33841 1.44104 1.21897 0.91467 0.99386 1.04732 1.21533 0.95022 0.93428 0.99467 1.22411 0.98401 0.98310 0.96043 1.22535 0.94976 0.98336 1.00630 1.22359 0.97637 0.98871 0.97395 1.22239 0.94784 1.00802 0.98170 0.92567 0.95364 0.95352 0.92978 0.92965 0.83796 0.84848 0.82692 0.73885 0.88623 0.88551 0.90178 0.92056 0.90696 0.91694 0.91859 0.91973 0.91689 0.91718 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.30 4.70 37.15 0.17 1.48 16 11 O -0.32 -5.82 9.39 -19.69 -0.18 -6.00 16 12 C 0.07 1.10 6.72 -38.92 -0.26 0.84 16 13 C -0.15 -2.18 9.14 -39.18 -0.36 -2.54 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.43 16 15 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 16 N -0.44 -7.42 7.88 -12.23 -0.10 -7.52 16 17 C 0.33 5.47 7.45 -154.44 -1.15 4.32 16 18 N -0.65 -9.48 5.39 -11.29 -0.06 -9.54 16 19 C 0.50 6.92 7.57 -10.98 -0.08 6.84 16 20 O -0.48 -8.02 13.04 5.55 0.07 -7.95 16 21 C -0.13 -1.31 4.83 -27.89 -0.13 -1.45 16 22 C -0.08 -0.73 2.55 -89.50 -0.23 -0.96 16 23 C -0.11 -1.17 5.40 -25.04 -0.14 -1.31 16 24 C -0.13 -1.07 6.91 -24.70 -0.17 -1.24 16 25 C -0.13 -0.95 6.83 -25.07 -0.17 -1.12 16 26 C -0.12 -0.96 6.46 -25.61 -0.17 -1.13 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 31 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.42 5.45 8.05 -40.82 -0.33 5.13 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.81 8.02 -51.93 -0.42 0.40 16 38 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 39 H 0.06 0.65 7.77 -51.93 -0.40 0.24 16 40 H 0.07 0.90 7.62 -51.93 -0.40 0.51 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -31.55 375.79 -9.99 -41.54 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.26 Total: 3.16 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.84 Total: -10.18 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.58 Total: -41.81 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.11 Total: -13.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.55 -9.99 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170693342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.244 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds