Wall clock time and date at job start Tue Mar 31 2020 12:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47283 * 269.99770 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99778 * 3 2 1 6 6 H 1.48503 * 109.47366 * 149.99733 * 3 2 1 7 7 C 1.37881 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00249 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00164 * 270.00010 * 10 9 7 12 12 C 1.50703 * 109.47040 * 270.00149 * 11 10 9 13 13 C 1.38227 * 119.61786 * 94.73039 * 12 11 10 14 14 C 1.38630 * 119.15963 * 179.75607 * 13 12 11 15 15 C 1.38678 * 118.41889 * 0.50557 * 14 13 12 16 16 C 1.38191 * 119.16250 * 359.73046 * 15 14 13 17 17 N 1.31854 * 119.61678 * 275.00089 * 12 11 10 18 18 C 1.34778 * 120.00003 * 89.99709 * 10 9 7 19 19 O 1.21279 * 120.00086 * 179.97438 * 18 10 9 20 20 C 1.50695 * 119.99868 * 0.02562 * 18 10 9 21 21 C 1.53004 * 109.47361 * 179.97438 * 20 18 10 22 22 C 1.52995 * 109.47255 * 179.97438 * 21 20 18 23 23 H 1.08999 * 110.83239 * 308.64769 * 22 21 20 24 24 C 1.54813 * 110.90744 * 184.99787 * 22 21 20 25 25 C 1.54098 * 104.30472 * 220.98959 * 24 22 21 26 26 O 1.43744 * 107.29564 * 357.90152 * 25 24 22 27 27 C 1.44373 * 106.97248 * 26.51652 * 26 25 24 28 28 H 0.97007 * 119.99796 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46662 * 59.99695 * 9 7 2 30 30 H 1.08996 * 109.46845 * 299.99867 * 9 7 2 31 31 H 1.08999 * 109.47395 * 29.99999 * 11 10 9 32 32 H 1.08998 * 109.47348 * 150.00071 * 11 10 9 33 33 H 1.08003 * 120.42145 * 359.97438 * 13 12 11 34 34 H 1.07992 * 120.78856 * 180.21411 * 14 13 12 35 35 H 1.07992 * 120.41653 * 179.71501 * 15 14 13 36 36 H 1.07993 * 119.61427 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.47783 * 59.99559 * 20 18 10 38 38 H 1.09005 * 109.47164 * 299.99563 * 20 18 10 39 39 H 1.08993 * 109.46687 * 59.99595 * 21 20 18 40 40 H 1.09005 * 109.46798 * 300.00000 * 21 20 18 41 41 H 1.09002 * 110.48794 * 102.24504 * 24 22 21 42 42 H 1.09002 * 110.48657 * 339.72926 * 24 22 21 43 43 H 1.08999 * 109.88182 * 117.33024 * 25 24 22 44 44 H 1.08997 * 109.87763 * 238.47782 * 25 24 22 45 45 H 1.09002 * 110.62093 * 78.43762 * 27 26 25 46 46 H 1.09000 * 110.61773 * 201.43358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2435 -3.2663 1.2686 12 6 5.6666 -3.0296 1.7042 13 6 5.9502 -1.9997 2.5815 14 6 7.2619 -1.7937 2.9799 15 6 8.2452 -2.6284 2.4705 16 6 7.8867 -3.6342 1.5933 17 7 6.6275 -3.8040 1.2400 18 6 4.2248 -3.2105 -1.1673 19 8 4.6295 -4.3538 -1.1675 20 6 3.9747 -2.4996 -2.4723 21 6 4.3069 -3.4365 -3.6354 22 6 4.0523 -2.7150 -4.9603 23 1 3.0538 -2.2783 -4.9782 24 6 4.2582 -3.6724 -6.1593 25 6 4.9953 -2.8167 -7.2077 26 8 5.1346 -1.4953 -6.6593 27 6 5.1344 -1.6332 -5.2222 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6809 0.8905 30 1 3.8752 -0.6798 -0.8894 31 1 3.5624 -2.8824 2.0281 32 1 4.0765 -4.3355 1.1380 33 1 5.1594 -1.3658 2.9546 34 1 7.5126 -0.9991 3.6669 35 1 9.2782 -2.4939 2.7556 36 1 8.6465 -4.2887 1.1925 37 1 4.6052 -1.6123 -2.5295 38 1 2.9268 -2.2050 -2.5306 39 1 3.6767 -4.3239 -3.5784 40 1 5.3549 -3.7307 -3.5770 41 1 3.2971 -4.0086 -6.5485 42 1 4.8694 -4.5258 -5.8654 43 1 5.9793 -3.2410 -7.4070 44 1 4.4135 -2.7764 -8.1285 45 1 6.1079 -1.9733 -4.8690 46 1 4.8597 -0.6918 -4.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:06 Heat of formation + Delta-G solvation = -55.178977 kcal Electronic energy + Delta-G solvation = -26932.943757 eV Core-core repulsion = 23208.205386 eV Total energy + Delta-G solvation = -3724.738371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14930 -39.51599 -38.77539 -35.30282 -34.25458 -32.83414 -32.27514 -31.63588 -30.64274 -28.62178 -28.13684 -26.30941 -24.01739 -23.39170 -22.54718 -22.32984 -21.55303 -20.22881 -18.32888 -17.19849 -16.71282 -16.51001 -16.36288 -16.00240 -15.53447 -15.50935 -15.27898 -15.21919 -14.64016 -14.15630 -13.84760 -13.57251 -13.29248 -13.06796 -12.94861 -12.79285 -12.54372 -12.35940 -12.08808 -11.86465 -11.57804 -11.51622 -11.45966 -11.09458 -10.96328 -10.81437 -10.68822 -10.53634 -10.36047 -10.28530 -9.75914 -9.69266 -9.66687 -9.21514 -9.15482 -8.81608 -8.73638 -7.80466 -6.25953 -4.27907 1.20371 1.42377 3.13437 3.20950 3.23424 3.40545 3.66287 3.96007 4.19205 4.22195 4.52635 4.57530 4.79823 4.87924 4.91263 4.94359 5.04429 5.09040 5.16153 5.24953 5.28154 5.33385 5.53506 5.55613 5.68338 5.69544 5.72300 5.78988 5.81332 5.89596 5.92634 5.97229 6.08407 6.17996 6.24454 6.26348 6.33231 6.39140 6.45207 6.60193 6.62827 6.82845 6.86540 7.28626 7.39756 8.10229 8.23688 8.38057 8.79621 8.97466 9.33609 10.86534 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007991 B = 0.004972 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.006488 B = 5629.643245 C = 7920.587771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.210 3.790 10 N -0.589 5.589 11 C 0.167 3.833 12 C 0.120 3.880 13 C -0.160 4.160 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.093 3.907 17 N -0.458 5.458 18 C 0.519 3.481 19 O -0.551 6.551 20 C -0.138 4.138 21 C -0.089 4.089 22 C -0.122 4.122 23 H 0.090 0.910 24 C -0.152 4.152 25 C 0.047 3.953 26 O -0.382 6.382 27 C 0.048 3.952 28 H 0.267 0.733 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.978 -3.168 -2.464 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.088 3.912 10 N -0.320 5.320 11 C 0.043 3.957 12 C -0.019 4.019 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.065 4.065 17 N -0.167 5.167 18 C 0.308 3.692 19 O -0.429 6.429 20 C -0.178 4.178 21 C -0.127 4.127 22 C -0.141 4.141 23 H 0.108 0.892 24 C -0.190 4.190 25 C -0.030 4.030 26 O -0.301 6.301 27 C -0.028 4.028 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.800 -4.111 -3.172 13.813 hybrid contribution 0.553 1.704 0.857 1.986 sum 13.353 -2.407 -2.315 13.764 Atomic orbital electron populations 1.69885 1.06206 1.27221 1.49326 1.24861 0.94683 0.98792 0.94242 0.86980 0.80421 0.84125 0.79044 1.19759 1.20856 1.18951 1.21378 0.88964 0.95038 1.52565 0.90217 1.19811 0.95845 0.78018 0.97495 1.47844 1.64333 1.15787 1.04021 1.20134 0.88671 0.99719 0.87183 1.21946 0.96663 0.91021 0.92242 1.22125 0.97641 0.98944 0.99305 1.21547 0.92887 0.98211 0.98057 1.22101 1.00301 0.97694 1.00120 1.22783 0.93438 0.95909 0.94331 1.67659 1.00365 1.26738 1.21920 1.20502 0.76623 0.86481 0.85601 1.90637 1.46612 1.18076 1.87624 1.21687 1.05150 0.99042 0.91942 1.21273 1.02427 0.98002 0.90968 1.22842 1.00541 0.95810 0.94874 0.89182 1.22992 1.01515 0.98994 0.95518 1.23132 0.99353 0.83380 0.97122 1.88848 1.94786 1.26889 1.19627 1.23755 0.98027 0.99884 0.81135 0.92319 0.95108 0.95252 0.88586 0.88895 0.84556 0.85140 0.85296 0.83237 0.89909 0.87430 0.90867 0.91469 0.90496 0.90463 0.92718 0.90192 0.92136 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 13.96 55.43 0.77 -24.37 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 19.24 27.47 -169.99 -4.67 14.57 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 7 C -0.54 -13.66 9.84 -34.44 -0.34 -13.99 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.21 4.46 4.03 -5.19 -0.02 4.44 16 10 N -0.59 -11.83 2.44 -176.44 -0.43 -12.26 16 11 C 0.17 3.06 5.71 -5.19 -0.03 3.03 16 12 C 0.12 2.04 6.36 -82.58 -0.53 1.51 16 13 C -0.16 -2.31 9.72 -39.44 -0.38 -2.70 16 14 C -0.08 -0.98 10.18 -39.27 -0.40 -1.38 16 15 C -0.18 -2.11 10.11 -39.44 -0.40 -2.51 16 16 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 17 N -0.46 -7.94 10.27 -9.47 -0.10 -8.04 16 18 C 0.52 10.45 7.67 -10.99 -0.08 10.36 16 19 O -0.55 -12.11 15.56 5.56 0.09 -12.03 16 20 C -0.14 -2.37 4.15 -27.88 -0.12 -2.49 16 21 C -0.09 -1.31 3.90 -26.73 -0.10 -1.41 16 22 C -0.12 -1.58 3.10 -88.49 -0.27 -1.85 16 23 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 24 C -0.15 -1.68 6.59 -25.20 -0.17 -1.85 16 25 C 0.05 0.52 7.70 37.73 0.29 0.81 16 26 O -0.38 -5.38 11.52 -35.23 -0.41 -5.78 16 27 C 0.05 0.63 6.65 38.34 0.25 0.89 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.65 7.13 -51.93 -0.37 0.27 16 30 H 0.03 0.61 5.87 -51.93 -0.30 0.30 16 31 H 0.10 1.64 7.97 -51.93 -0.41 1.23 16 32 H 0.09 1.78 7.42 -51.93 -0.39 1.40 16 33 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 38 H 0.11 1.98 8.00 -51.93 -0.42 1.56 16 39 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -31.22 378.89 -8.92 -40.14 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.30 Total: 6.18 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.59 Total: -4.12 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.25 Total: -44.67 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.32 Total: -17.81 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.22 -8.92 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.038 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds