Wall clock time and date at job start Tue Mar 31 2020 12:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47283 * 269.99770 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99778 * 3 2 1 6 6 H 1.48503 * 109.47366 * 149.99733 * 3 2 1 7 7 C 1.37881 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00249 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00164 * 270.00010 * 10 9 7 12 12 C 1.50703 * 109.47040 * 270.00149 * 11 10 9 13 13 C 1.38227 * 119.61786 * 94.73039 * 12 11 10 14 14 C 1.38630 * 119.15963 * 179.75607 * 13 12 11 15 15 C 1.38678 * 118.41889 * 0.50557 * 14 13 12 16 16 C 1.38191 * 119.16250 * 359.73046 * 15 14 13 17 17 N 1.31854 * 119.61678 * 275.00089 * 12 11 10 18 18 C 1.34778 * 120.00003 * 89.99709 * 10 9 7 19 19 O 1.21279 * 120.00086 * 179.97438 * 18 10 9 20 20 C 1.50695 * 119.99868 * 0.02562 * 18 10 9 21 21 C 1.53004 * 109.47361 * 179.97438 * 20 18 10 22 22 C 1.52995 * 109.47255 * 179.97438 * 21 20 18 23 23 H 1.08999 * 110.83239 * 308.64769 * 22 21 20 24 24 C 1.54813 * 110.90744 * 184.99787 * 22 21 20 25 25 C 1.54098 * 104.30472 * 220.98959 * 24 22 21 26 26 O 1.43744 * 107.29564 * 357.90152 * 25 24 22 27 27 C 1.44373 * 106.97248 * 26.51652 * 26 25 24 28 28 H 0.97007 * 119.99796 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46662 * 59.99695 * 9 7 2 30 30 H 1.08996 * 109.46845 * 299.99867 * 9 7 2 31 31 H 1.08999 * 109.47395 * 29.99999 * 11 10 9 32 32 H 1.08998 * 109.47348 * 150.00071 * 11 10 9 33 33 H 1.08003 * 120.42145 * 359.97438 * 13 12 11 34 34 H 1.07992 * 120.78856 * 180.21411 * 14 13 12 35 35 H 1.07992 * 120.41653 * 179.71501 * 15 14 13 36 36 H 1.07993 * 119.61427 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.47783 * 59.99559 * 20 18 10 38 38 H 1.09005 * 109.47164 * 299.99563 * 20 18 10 39 39 H 1.08993 * 109.46687 * 59.99595 * 21 20 18 40 40 H 1.09005 * 109.46798 * 300.00000 * 21 20 18 41 41 H 1.09002 * 110.48794 * 102.24504 * 24 22 21 42 42 H 1.09002 * 110.48657 * 339.72926 * 24 22 21 43 43 H 1.08999 * 109.88182 * 117.33024 * 25 24 22 44 44 H 1.08997 * 109.87763 * 238.47782 * 25 24 22 45 45 H 1.09002 * 110.62093 * 78.43762 * 27 26 25 46 46 H 1.09000 * 110.61773 * 201.43358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2435 -3.2663 1.2686 12 6 5.6666 -3.0296 1.7042 13 6 5.9502 -1.9997 2.5815 14 6 7.2619 -1.7937 2.9799 15 6 8.2452 -2.6284 2.4705 16 6 7.8867 -3.6342 1.5933 17 7 6.6275 -3.8040 1.2400 18 6 4.2248 -3.2105 -1.1673 19 8 4.6295 -4.3538 -1.1675 20 6 3.9747 -2.4996 -2.4723 21 6 4.3069 -3.4365 -3.6354 22 6 4.0523 -2.7150 -4.9603 23 1 3.0538 -2.2783 -4.9782 24 6 4.2582 -3.6724 -6.1593 25 6 4.9953 -2.8167 -7.2077 26 8 5.1346 -1.4953 -6.6593 27 6 5.1344 -1.6332 -5.2222 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6809 0.8905 30 1 3.8752 -0.6798 -0.8894 31 1 3.5624 -2.8824 2.0281 32 1 4.0765 -4.3355 1.1380 33 1 5.1594 -1.3658 2.9546 34 1 7.5126 -0.9991 3.6669 35 1 9.2782 -2.4939 2.7556 36 1 8.6465 -4.2887 1.1925 37 1 4.6052 -1.6123 -2.5295 38 1 2.9268 -2.2050 -2.5306 39 1 3.6767 -4.3239 -3.5784 40 1 5.3549 -3.7307 -3.5770 41 1 3.2971 -4.0086 -6.5485 42 1 4.8694 -4.5258 -5.8654 43 1 5.9793 -3.2410 -7.4070 44 1 4.4135 -2.7764 -8.1285 45 1 6.1079 -1.9733 -4.8690 46 1 4.8597 -0.6918 -4.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:06 Heat of formation + Delta-G solvation = -74.091274 kcal Electronic energy + Delta-G solvation = -26933.763856 eV Core-core repulsion = 23208.205386 eV Total energy + Delta-G solvation = -3725.558470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37788 -40.64104 -40.08830 -36.90744 -35.50773 -34.63932 -33.41729 -32.91635 -31.71467 -29.97857 -29.63096 -27.65459 -25.27764 -24.58530 -24.11553 -23.38683 -22.69378 -21.31178 -19.87961 -19.11563 -18.03501 -17.70116 -17.48333 -17.19700 -16.92767 -16.71594 -16.46876 -16.29445 -16.10711 -15.64665 -15.11122 -14.72927 -14.65882 -14.34337 -14.17575 -14.00819 -13.85039 -13.75840 -13.63688 -13.20660 -13.05497 -12.70253 -12.60362 -12.47915 -12.40065 -12.26924 -12.04942 -11.91492 -11.70011 -11.61071 -11.41089 -10.81508 -10.79891 -10.65314 -10.63339 -10.33853 -9.94062 -9.43637 -8.28317 -6.35755 0.14173 0.41810 1.40953 1.42173 1.51182 1.80928 2.26495 2.35219 2.97315 3.03013 3.05743 3.39905 3.57142 3.64355 3.82324 3.87825 4.02329 4.05226 4.14404 4.19715 4.25972 4.27279 4.31154 4.41292 4.51824 4.59333 4.65524 4.67862 4.73869 4.79339 4.79955 4.86451 4.87471 4.88814 4.91135 5.05398 5.09797 5.21911 5.24939 5.28399 5.36579 5.44949 5.67326 5.82518 5.91237 6.20529 6.61982 6.71720 7.15686 7.26457 7.39928 8.87835 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007991 B = 0.004972 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.006488 B = 5629.643245 C = 7920.587771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.031 0.969 9 C 0.220 3.780 10 N -0.593 5.593 11 C 0.167 3.833 12 C 0.096 3.904 13 C -0.168 4.168 14 C -0.076 4.076 15 C -0.165 4.165 16 C 0.078 3.922 17 N -0.500 5.500 18 C 0.510 3.490 19 O -0.574 6.574 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.120 4.120 23 H 0.082 0.918 24 C -0.149 4.149 25 C 0.043 3.957 26 O -0.403 6.403 27 C 0.048 3.952 28 H 0.268 0.732 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.225 -1.468 -2.332 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.176 4.176 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.576 4.576 8 H 0.050 0.950 9 C 0.099 3.901 10 N -0.323 5.323 11 C 0.043 3.957 12 C -0.042 4.042 13 C -0.188 4.188 14 C -0.102 4.102 15 C -0.185 4.185 16 C -0.079 4.079 17 N -0.209 5.209 18 C 0.300 3.700 19 O -0.455 6.455 20 C -0.173 4.173 21 C -0.114 4.114 22 C -0.139 4.139 23 H 0.101 0.899 24 C -0.186 4.186 25 C -0.033 4.033 26 O -0.323 6.323 27 C -0.028 4.028 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.064 -2.429 -3.032 16.527 hybrid contribution -0.445 1.045 0.868 1.429 sum 15.619 -1.384 -2.163 15.829 Atomic orbital electron populations 1.70048 1.08375 1.28325 1.51313 1.25728 0.95354 1.02848 0.93693 0.85902 0.79947 0.78683 0.79710 1.18767 1.21178 1.16020 1.21477 0.91079 0.93212 1.51844 0.95041 1.19627 0.92957 0.78987 0.98560 1.47912 1.64027 1.15512 1.04861 1.20111 0.90820 0.98221 0.86565 1.21585 0.95461 0.92873 0.94313 1.22238 0.99331 0.98311 0.98932 1.21988 0.91654 0.98766 0.97783 1.22525 1.02197 0.95771 0.97966 1.23258 0.92565 0.97139 0.94952 1.67533 1.01947 1.27956 1.23507 1.21046 0.76114 0.86396 0.86482 1.90612 1.47778 1.19080 1.88026 1.21688 1.04333 0.99917 0.91314 1.21142 1.01985 0.97165 0.91093 1.22761 1.00268 0.96319 0.94528 0.89949 1.22989 1.02300 0.98735 0.94609 1.23314 1.00402 0.82215 0.97396 1.88823 1.94936 1.28581 1.19913 1.23768 0.98194 0.99789 0.81060 0.92294 0.93709 0.93762 0.88415 0.91079 0.83948 0.81531 0.81247 0.81185 0.88287 0.89061 0.92086 0.91470 0.89519 0.89818 0.91377 0.88716 0.91460 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.84 13.96 21.45 0.30 -54.55 16 2 C 0.02 1.21 5.47 84.66 0.46 1.67 16 3 Si 0.93 38.75 27.47 68.60 1.88 40.63 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.24 -8.72 6.54 99.48 0.65 -8.07 16 7 C -0.54 -27.89 9.84 25.60 0.25 -27.64 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 9 C 0.22 9.29 4.03 85.64 0.35 9.63 16 10 N -0.59 -24.35 2.44 -830.51 -2.03 -26.38 16 11 C 0.17 6.35 5.71 85.63 0.49 6.84 16 12 C 0.10 3.23 6.36 42.55 0.27 3.50 16 13 C -0.17 -4.54 9.72 22.36 0.22 -4.32 16 14 C -0.08 -1.55 10.18 22.47 0.23 -1.32 16 15 C -0.16 -3.16 10.11 22.36 0.23 -2.94 16 16 C 0.08 1.99 11.18 84.67 0.95 2.94 16 17 N -0.50 -17.19 10.27 -183.88 -1.89 -19.08 16 18 C 0.51 21.09 7.67 87.66 0.67 21.76 16 19 O -0.57 -26.18 15.56 -3.03 -0.05 -26.23 16 20 C -0.13 -4.61 4.15 29.85 0.12 -4.48 16 21 C -0.08 -2.25 3.90 30.59 0.12 -2.13 16 22 C -0.12 -3.03 3.10 -9.41 -0.03 -3.06 16 23 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 24 C -0.15 -3.07 6.59 31.58 0.21 -2.86 16 25 C 0.04 0.87 7.70 72.35 0.56 1.43 16 26 O -0.40 -10.71 11.52 -148.98 -1.72 -12.43 16 27 C 0.05 1.20 6.65 72.75 0.48 1.68 16 28 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 29 H 0.04 1.79 7.13 -2.39 -0.02 1.77 16 30 H 0.04 1.76 5.87 -2.39 -0.01 1.74 16 31 H 0.10 3.53 7.97 -2.39 -0.02 3.51 16 32 H 0.07 2.94 7.42 -2.39 -0.02 2.92 16 33 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.10 3.07 7.00 -2.39 -0.02 3.06 16 38 H 0.09 3.48 8.00 -2.38 -0.02 3.46 16 39 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 40 H 0.07 1.99 7.94 -2.38 -0.02 1.98 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.62 7.86 -2.39 -0.02 1.60 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.07 1.57 7.93 -2.39 -0.02 1.55 16 46 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.47 378.89 2.98 -67.49 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.90 Total: 29.83 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.57 Total: 0.70 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.62 Total: -100.00 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.76 Total: -38.65 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.88 Total: 40.63 kcal Total: -70.47 2.98 -67.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.599 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds