Wall clock time and date at job start Tue Mar 31 2020 12:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00078 * 90.00278 * 10 9 7 12 12 C 1.50695 * 109.47264 * 89.99805 * 11 10 9 13 13 C 1.38233 * 119.61729 * 95.00306 * 12 11 10 14 14 C 1.38621 * 119.16004 * 179.97438 * 13 12 11 15 15 C 1.38670 * 118.42210 * 0.02562 * 14 13 12 16 16 C 1.38180 * 119.16510 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.61973 * 274.72559 * 12 11 10 18 18 C 1.34777 * 120.00178 * 270.00180 * 10 9 7 19 19 O 1.21283 * 119.99845 * 179.97438 * 18 10 9 20 20 C 1.50695 * 119.99813 * 359.97438 * 18 10 9 21 21 C 1.52998 * 109.47104 * 180.02562 * 20 18 10 22 22 C 1.52995 * 109.47314 * 180.02562 * 21 20 18 23 23 H 1.09009 * 110.45701 * 52.39389 * 22 21 20 24 24 C 1.54509 * 110.51320 * 174.99877 * 22 21 20 25 25 C 1.54482 * 104.06054 * 118.64507 * 24 22 21 26 26 O 1.44427 * 104.80635 * 23.97975 * 25 24 22 27 27 C 1.44428 * 105.27326 * 319.49178 * 26 25 24 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 30 30 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 31 31 H 1.09000 * 109.47148 * 210.00501 * 11 10 9 32 32 H 1.09004 * 109.46943 * 329.99756 * 11 10 9 33 33 H 1.08000 * 120.41824 * 359.95461 * 13 12 11 34 34 H 1.07997 * 120.78861 * 180.02562 * 14 13 12 35 35 H 1.08003 * 120.42222 * 180.02562 * 15 14 13 36 36 H 1.08003 * 119.62135 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.47145 * 300.00094 * 20 18 10 38 38 H 1.09000 * 109.47241 * 60.00372 * 20 18 10 39 39 H 1.09002 * 109.47124 * 300.00019 * 21 20 18 40 40 H 1.09000 * 109.47273 * 60.00353 * 21 20 18 41 41 H 1.09001 * 110.51077 * 237.28902 * 24 22 21 42 42 H 1.08998 * 110.51414 * 0.02562 * 24 22 21 43 43 H 1.09006 * 110.37170 * 142.81288 * 25 24 22 44 44 H 1.09001 * 110.37490 * 265.14782 * 25 24 22 45 45 H 1.09008 * 110.36374 * 281.67762 * 27 26 25 46 46 H 1.08996 * 110.37130 * 159.34298 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1695 1.2682 12 6 1.7622 -5.2836 1.7032 13 6 2.0790 -6.5916 1.3874 14 6 1.2293 -7.6091 1.7927 15 6 0.0873 -7.2715 2.5033 16 6 -0.1638 -5.9417 2.7823 17 7 0.6701 -5.0001 2.3854 18 6 2.6410 -4.1249 -1.1677 19 8 3.4294 -5.0465 -1.1676 20 6 2.1509 -3.5525 -2.4728 21 6 2.7966 -4.3086 -3.6357 22 6 2.2996 -3.7271 -4.9607 23 1 2.4405 -2.6463 -4.9791 24 6 3.0306 -4.3887 -6.1504 25 6 1.9002 -5.0693 -6.9538 26 8 0.7060 -4.3360 -6.6045 27 6 0.8142 -4.0861 -5.1861 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6240 -2.5568 -0.8903 31 1 3.6885 -4.5595 1.1379 32 1 2.6868 -3.3878 2.0279 33 1 2.9769 -6.8179 0.8317 34 1 1.4514 -8.6402 1.5607 35 1 -0.5969 -8.0384 2.8353 36 1 -1.0508 -5.6705 3.3355 37 1 1.0673 -3.6549 -2.5303 38 1 2.4198 -2.4978 -2.5307 39 1 3.8803 -4.2066 -3.5783 40 1 2.5273 -5.3632 -3.5776 41 1 3.5307 -3.6348 -6.7583 42 1 3.7457 -5.1304 -5.7946 43 1 2.0945 -4.9906 -8.0235 44 1 1.8028 -6.1147 -6.6609 45 1 0.5502 -4.9808 -4.6221 46 1 0.1742 -3.2522 -4.8978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:08 Heat of formation + Delta-G solvation = -77.471001 kcal Electronic energy + Delta-G solvation = -26898.765653 eV Core-core repulsion = 23173.060627 eV Total energy + Delta-G solvation = -3725.705026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.39674 -40.66648 -40.09248 -36.84536 -35.49890 -34.66436 -33.38686 -32.90767 -31.64843 -29.65670 -29.29786 -27.61679 -25.32914 -24.74663 -24.31536 -23.54415 -22.75963 -21.16686 -19.91792 -18.69885 -18.00278 -17.70965 -17.41518 -17.06190 -16.97748 -16.68857 -16.45018 -16.37319 -16.14404 -15.82038 -15.08020 -14.78880 -14.46618 -14.22601 -14.18395 -14.02991 -13.74916 -13.55230 -13.46459 -13.15112 -13.04785 -12.75779 -12.62681 -12.54011 -12.40168 -12.34292 -12.06366 -11.80704 -11.72991 -11.58301 -11.38055 -10.84450 -10.75813 -10.74753 -10.57820 -10.36941 -9.94083 -9.48104 -8.18694 -6.33457 0.13872 0.39776 1.41984 1.43535 1.53042 1.75645 2.26680 2.44535 2.98629 3.07009 3.11823 3.38450 3.61332 3.70159 3.81355 3.88246 4.02616 4.08883 4.16503 4.20029 4.26448 4.27168 4.33933 4.43434 4.52685 4.59989 4.68150 4.72880 4.77632 4.82685 4.86057 4.87675 4.91324 4.95659 5.08360 5.10155 5.22223 5.24430 5.25871 5.28258 5.37717 5.63889 5.79191 5.83422 5.86044 6.06973 6.57157 6.81505 7.12861 7.29054 7.40895 8.87365 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007090 B = 0.005202 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.511063 B = 5381.474107 C = 8302.728844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.260 3.740 10 N -0.591 5.591 11 C 0.167 3.833 12 C 0.095 3.905 13 C -0.160 4.160 14 C -0.078 4.078 15 C -0.164 4.164 16 C 0.079 3.921 17 N -0.507 5.507 18 C 0.512 3.488 19 O -0.584 6.584 20 C -0.130 4.130 21 C -0.076 4.076 22 C -0.120 4.120 23 H 0.082 0.918 24 C -0.146 4.146 25 C 0.039 3.961 26 O -0.401 6.401 27 C 0.046 3.954 28 H 0.267 0.733 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 -13.884 -4.585 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.139 3.861 10 N -0.321 5.321 11 C 0.043 3.957 12 C -0.043 4.043 13 C -0.181 4.181 14 C -0.104 4.104 15 C -0.184 4.184 16 C -0.078 4.078 17 N -0.217 5.217 18 C 0.302 3.698 19 O -0.467 6.467 20 C -0.170 4.170 21 C -0.114 4.114 22 C -0.139 4.139 23 H 0.101 0.899 24 C -0.184 4.184 25 C -0.037 4.037 26 O -0.320 6.320 27 C -0.031 4.031 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.190 0.810 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.406 -13.273 -4.520 14.226 hybrid contribution 0.395 0.471 0.359 0.712 sum 2.801 -12.802 -4.161 13.750 Atomic orbital electron populations 1.70034 1.07335 1.28095 1.50457 1.25659 0.95521 1.02313 0.94364 0.85573 0.78752 0.79182 0.78284 1.20280 1.19189 1.20586 1.21659 0.93295 0.91487 1.51864 0.92695 1.19008 0.87355 0.82669 0.97087 1.48178 1.45185 1.34042 1.04707 1.20122 0.95615 0.93688 0.86273 1.21623 0.93479 0.94442 0.94728 1.22154 1.02027 0.93176 1.00739 1.21985 0.93167 1.00639 0.94624 1.22519 0.98656 0.97931 0.99283 1.23273 0.97994 0.89668 0.96892 1.67497 1.03858 1.39505 1.10871 1.20997 0.80361 0.82011 0.86383 1.90537 1.36860 1.30988 1.88268 1.21636 1.01892 1.01964 0.91502 1.21265 1.00336 0.98914 0.90907 1.22545 0.95041 1.01383 0.94930 0.89945 1.22997 0.98542 1.00879 0.95936 1.23613 0.83373 0.95591 1.01139 1.89081 1.42832 1.76138 1.23990 1.23579 0.96609 1.00931 0.81944 0.92403 0.96470 0.95686 0.88800 0.90357 0.84675 0.81613 0.81052 0.80967 0.89545 0.88976 0.91308 0.91523 0.89709 0.89265 0.87533 0.91594 0.91992 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 13.29 21.45 0.28 -51.54 16 2 C 0.02 1.16 5.46 84.66 0.46 1.62 16 3 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.54 -28.75 9.28 25.60 0.24 -28.51 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.26 12.90 4.96 85.63 0.43 13.33 16 10 N -0.59 -25.55 2.44 -830.49 -2.03 -27.58 16 11 C 0.17 6.60 5.71 85.63 0.49 7.09 16 12 C 0.10 3.46 6.36 42.55 0.27 3.73 16 13 C -0.16 -4.86 9.72 22.36 0.22 -4.64 16 14 C -0.08 -1.80 10.18 22.46 0.23 -1.57 16 15 C -0.16 -3.54 10.11 22.36 0.23 -3.31 16 16 C 0.08 2.21 11.18 84.67 0.95 3.16 16 17 N -0.51 -18.79 10.27 -183.89 -1.89 -20.68 16 18 C 0.51 20.77 7.67 87.66 0.67 21.44 16 19 O -0.58 -24.19 15.52 -3.04 -0.05 -24.24 16 20 C -0.13 -4.59 4.13 29.85 0.12 -4.47 16 21 C -0.08 -2.17 3.72 30.59 0.11 -2.06 16 22 C -0.12 -2.99 3.11 -9.78 -0.03 -3.02 16 23 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 24 C -0.15 -2.88 6.74 31.61 0.21 -2.67 16 25 C 0.04 0.78 7.63 72.49 0.55 1.33 16 26 O -0.40 -10.88 11.65 -148.98 -1.74 -12.61 16 27 C 0.05 1.21 6.51 72.48 0.47 1.68 16 28 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 30 H 0.03 1.29 6.44 -2.39 -0.02 1.27 16 31 H 0.09 3.49 7.32 -2.39 -0.02 3.47 16 32 H 0.08 3.26 8.07 -2.38 -0.02 3.25 16 33 H 0.14 4.06 8.01 -2.91 -0.02 4.04 16 34 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.09 3.03 6.89 -2.39 -0.02 3.01 16 38 H 0.09 3.50 8.00 -2.39 -0.02 3.48 16 39 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 40 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.59 7.73 -2.39 -0.02 1.57 16 43 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.59 7.75 -2.38 -0.02 1.57 16 46 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -65.83 381.83 3.19 -62.64 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.95 Total: 26.59 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.62 Total: 3.13 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.63 Total: -99.80 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.78 Total: -36.85 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -65.83 3.19 -62.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.830 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds