Wall clock time and date at job start Tue Mar 31 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38795 * 120.49983 * 359.73087 * 12 11 10 14 14 C 1.38782 * 118.44958 * 179.70991 * 13 12 11 15 15 C 1.38087 * 119.35318 * 0.57949 * 14 13 12 16 16 N 1.31963 * 120.95129 * 359.68214 * 15 14 13 17 17 C 1.32271 * 121.69355 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72883 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00246 * 359.97438 * 18 17 16 20 20 O 1.21288 * 119.99760 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00304 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.47012 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47021 * 179.97438 * 22 21 19 24 24 C 1.53775 * 113.61294 * 274.13514 * 23 22 21 25 25 C 1.53958 * 87.01747 * 220.04560 * 24 23 22 26 26 C 1.53780 * 113.61371 * 176.52342 * 23 22 21 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.08006 * 120.77770 * 359.97407 * 13 12 11 33 33 H 1.07998 * 120.32458 * 180.26187 * 14 13 12 34 34 H 1.07992 * 119.52707 * 179.70108 * 15 14 13 35 35 H 0.97000 * 119.99910 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.46998 * 299.99981 * 21 19 18 37 37 H 1.08993 * 109.47139 * 59.99712 * 21 19 18 38 38 H 1.09003 * 109.46898 * 299.99644 * 22 21 19 39 39 H 1.09001 * 109.47119 * 59.99691 * 22 21 19 40 40 H 1.09003 * 112.84634 * 45.33104 * 23 22 21 41 41 H 1.08991 * 113.61714 * 334.56595 * 24 23 22 42 42 H 1.08999 * 113.61438 * 105.47621 * 24 23 22 43 43 H 1.09000 * 113.53669 * 270.81022 * 25 24 23 44 44 H 1.09003 * 113.66234 * 139.92994 * 25 24 23 45 45 H 1.08997 * 113.61345 * 254.52998 * 26 23 22 46 46 H 1.08993 * 113.61235 * 25.35100 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9793 -0.0070 14 6 4.3720 -7.1695 -0.0011 15 6 3.6880 -8.3691 -0.0010 16 7 2.3687 -8.3981 -0.0002 17 6 1.6492 -7.2882 0.0000 18 7 0.2557 -7.3667 0.0014 19 6 -0.3515 -8.5699 0.0020 20 8 0.3131 -9.5845 0.0018 21 6 -1.8561 -8.6547 0.0028 22 6 -2.2841 -10.1237 0.0040 23 6 -3.8117 -10.2098 0.0056 24 6 -4.4310 -10.1423 1.4115 25 6 -5.4185 -11.2257 0.9409 26 6 -4.3477 -11.6487 -0.0786 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1697 -5.0281 -0.0123 33 1 5.4519 -7.1576 -0.0017 34 1 4.2407 -9.2968 -0.0012 35 1 -0.2758 -6.5552 0.0019 36 1 -2.2472 -8.1619 0.8930 37 1 -2.2483 -8.1623 -0.8869 38 1 -1.8930 -10.6168 -0.8860 39 1 -1.8919 -10.6157 0.8941 40 1 -4.2747 -9.5289 -0.7087 41 1 -3.7588 -10.4775 2.2012 42 1 -4.9044 -9.1862 1.6346 43 1 -6.3218 -10.8222 0.4834 44 1 -5.6273 -11.9846 1.6950 45 1 -4.7537 -11.9068 -1.0566 46 1 -3.6520 -12.3966 0.3017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176393177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:35 Heat of formation + Delta-G solvation = -30.489599 kcal Electronic energy + Delta-G solvation = -25525.580956 eV Core-core repulsion = 21801.913197 eV Total energy + Delta-G solvation = -3723.667759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86814 -39.55748 -38.78495 -37.75244 -34.79894 -33.48373 -32.94051 -31.59193 -30.58448 -29.16115 -26.70818 -25.80789 -25.41542 -23.71659 -22.85200 -22.06005 -20.93119 -20.09954 -19.63712 -18.30845 -17.47286 -17.14306 -16.17426 -16.07040 -15.80303 -15.75242 -15.39954 -14.87719 -14.74161 -14.57416 -14.17232 -13.97625 -13.69355 -13.24940 -12.97147 -12.82717 -12.67750 -12.41598 -12.20804 -12.02555 -11.92197 -11.59192 -11.17781 -11.07632 -11.00189 -10.79114 -10.69154 -10.67777 -10.46133 -10.33254 -10.14832 -10.05747 -9.78118 -9.42138 -9.20755 -8.99742 -8.53311 -7.65151 -6.19073 -4.24013 1.21748 1.45385 2.76084 2.93497 3.21775 3.27957 3.30169 3.53048 4.02089 4.29334 4.32994 4.38262 4.40633 4.57196 4.61388 4.79293 4.95350 4.96026 5.07647 5.12792 5.17839 5.26242 5.34864 5.46352 5.46689 5.50499 5.52374 5.56186 5.66347 5.68942 5.85195 5.86995 5.89160 6.04410 6.07009 6.10658 6.19229 6.30664 6.37539 6.53398 6.64249 7.30100 7.33994 7.51495 7.63434 7.84604 8.09044 8.13371 8.39011 8.81209 9.40985 10.92385 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002563 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.535232 B =10924.179128 C =13192.332078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.066 3.934 13 C -0.149 4.149 14 C -0.161 4.161 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.654 5.654 19 C 0.502 3.498 20 O -0.483 6.483 21 C -0.139 4.139 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.138 4.138 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.424 0.576 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -19.355 0.494 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.182 4.182 15 C -0.082 4.082 16 N -0.160 5.160 17 C 0.095 3.905 18 N -0.302 5.302 19 C 0.288 3.712 20 O -0.353 6.353 21 C -0.179 4.179 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.177 4.177 25 C -0.182 4.182 26 C -0.175 4.175 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.262 0.738 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.277 -20.767 0.501 21.209 hybrid contribution 0.940 2.449 -0.017 2.623 sum -3.337 -18.318 0.484 18.626 Atomic orbital electron populations 1.69963 1.06100 1.27093 1.49532 1.24982 0.94921 0.99421 0.94796 0.86481 0.79748 0.82864 0.78272 1.20455 1.21004 1.19747 1.20946 0.93066 0.90132 1.52494 0.92339 1.19125 0.94128 0.88912 0.98882 1.23395 0.97251 0.80320 0.99824 1.86098 1.36239 1.12901 1.87599 1.19613 0.91148 0.87152 1.00615 1.21611 0.92277 1.00341 1.03283 1.21887 1.01171 0.92546 1.02613 1.22412 0.88854 0.97864 0.99103 1.67630 1.07833 1.26947 1.13540 1.17860 0.85072 0.86893 1.00650 1.43587 1.03675 1.10680 1.72275 1.20987 0.90779 0.82921 0.76474 1.90780 1.66199 1.33965 1.44386 1.21704 0.91186 1.00154 1.04826 1.21327 0.93971 0.94165 1.03568 1.22595 0.95083 0.97552 0.97826 1.23038 0.98555 0.99252 0.96881 1.22844 0.97287 0.98948 0.99105 1.22929 0.98312 0.96764 0.99492 0.92631 0.95348 0.95348 0.92956 0.92958 0.83772 0.84824 0.82669 0.73830 0.88590 0.88621 0.91038 0.91051 0.89127 0.90046 0.91467 0.90340 0.91666 0.91648 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.30 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.81 9.38 -19.66 -0.18 -6.00 16 12 C 0.07 1.11 6.72 -38.92 -0.26 0.85 16 13 C -0.15 -2.18 9.14 -39.17 -0.36 -2.54 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.43 16 15 C 0.07 1.02 11.17 -17.55 -0.20 0.83 16 16 N -0.44 -7.52 7.88 -12.22 -0.10 -7.62 16 17 C 0.33 5.49 7.45 -154.44 -1.15 4.34 16 18 N -0.65 -9.53 5.39 -11.29 -0.06 -9.59 16 19 C 0.50 7.01 7.79 -10.99 -0.09 6.93 16 20 O -0.48 -8.38 14.24 5.55 0.08 -8.31 16 21 C -0.14 -1.33 5.70 -27.88 -0.16 -1.49 16 22 C -0.09 -0.87 4.33 -26.73 -0.12 -0.99 16 23 C -0.11 -0.87 3.64 -89.81 -0.33 -1.20 16 24 C -0.14 -1.04 7.65 -25.83 -0.20 -1.24 16 25 C -0.14 -1.00 8.09 -25.82 -0.21 -1.21 16 26 C -0.14 -1.01 7.65 -25.92 -0.20 -1.21 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 31 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 32 H 0.14 1.96 6.44 -52.48 -0.34 1.63 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.42 5.46 8.04 -40.82 -0.33 5.13 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -31.95 382.32 -10.14 -42.09 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.32 Total: 3.00 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -4.04 Total: -10.19 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.58 Total: -41.95 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.11 Total: -14.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.95 -10.14 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176393177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.599 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds