Wall clock time and date at job start Tue Mar 31 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38795 * 120.49983 * 359.73087 * 12 11 10 14 14 C 1.38782 * 118.44958 * 179.70991 * 13 12 11 15 15 C 1.38087 * 119.35318 * 0.57949 * 14 13 12 16 16 N 1.31963 * 120.95129 * 359.68214 * 15 14 13 17 17 C 1.32271 * 121.69355 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72883 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00246 * 359.97438 * 18 17 16 20 20 O 1.21288 * 119.99760 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00304 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.47012 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47021 * 179.97438 * 22 21 19 24 24 C 1.53775 * 113.61294 * 274.13514 * 23 22 21 25 25 C 1.53958 * 87.01747 * 220.04560 * 24 23 22 26 26 C 1.53780 * 113.61371 * 176.52342 * 23 22 21 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.08006 * 120.77770 * 359.97407 * 13 12 11 33 33 H 1.07998 * 120.32458 * 180.26187 * 14 13 12 34 34 H 1.07992 * 119.52707 * 179.70108 * 15 14 13 35 35 H 0.97000 * 119.99910 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.46998 * 299.99981 * 21 19 18 37 37 H 1.08993 * 109.47139 * 59.99712 * 21 19 18 38 38 H 1.09003 * 109.46898 * 299.99644 * 22 21 19 39 39 H 1.09001 * 109.47119 * 59.99691 * 22 21 19 40 40 H 1.09003 * 112.84634 * 45.33104 * 23 22 21 41 41 H 1.08991 * 113.61714 * 334.56595 * 24 23 22 42 42 H 1.08999 * 113.61438 * 105.47621 * 24 23 22 43 43 H 1.09000 * 113.53669 * 270.81022 * 25 24 23 44 44 H 1.09003 * 113.66234 * 139.92994 * 25 24 23 45 45 H 1.08997 * 113.61345 * 254.52998 * 26 23 22 46 46 H 1.08993 * 113.61235 * 25.35100 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9793 -0.0070 14 6 4.3720 -7.1695 -0.0011 15 6 3.6880 -8.3691 -0.0010 16 7 2.3687 -8.3981 -0.0002 17 6 1.6492 -7.2882 0.0000 18 7 0.2557 -7.3667 0.0014 19 6 -0.3515 -8.5699 0.0020 20 8 0.3131 -9.5845 0.0018 21 6 -1.8561 -8.6547 0.0028 22 6 -2.2841 -10.1237 0.0040 23 6 -3.8117 -10.2098 0.0056 24 6 -4.4310 -10.1423 1.4115 25 6 -5.4185 -11.2257 0.9409 26 6 -4.3477 -11.6487 -0.0786 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1697 -5.0281 -0.0123 33 1 5.4519 -7.1576 -0.0017 34 1 4.2407 -9.2968 -0.0012 35 1 -0.2758 -6.5552 0.0019 36 1 -2.2472 -8.1619 0.8930 37 1 -2.2483 -8.1623 -0.8869 38 1 -1.8930 -10.6168 -0.8860 39 1 -1.8919 -10.6157 0.8941 40 1 -4.2747 -9.5289 -0.7087 41 1 -3.7588 -10.4775 2.2012 42 1 -4.9044 -9.1862 1.6346 43 1 -6.3218 -10.8222 0.4834 44 1 -5.6273 -11.9846 1.6950 45 1 -4.7537 -11.9068 -1.0566 46 1 -3.6520 -12.3966 0.3017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176393177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:35 Heat of formation + Delta-G solvation = -47.748214 kcal Electronic energy + Delta-G solvation = -25526.329346 eV Core-core repulsion = 21801.913197 eV Total energy + Delta-G solvation = -3724.416149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03946 -40.57620 -39.59853 -39.04707 -35.96735 -35.44248 -33.79018 -32.87456 -32.21676 -30.44165 -27.51519 -27.16438 -26.40467 -24.98612 -24.03244 -23.09140 -22.41768 -21.18166 -20.26674 -19.58543 -18.83300 -18.24837 -18.01609 -17.22635 -16.98978 -16.74467 -16.46556 -16.31821 -15.91741 -15.53461 -15.26436 -15.18468 -14.73308 -14.36812 -14.31887 -14.12205 -13.66870 -13.62185 -13.30276 -13.27236 -12.90460 -12.80522 -12.74417 -12.44427 -12.29017 -11.90302 -11.85386 -11.70750 -11.63382 -11.45009 -11.39523 -11.32380 -11.00683 -10.94380 -10.60685 -10.40905 -10.15307 -8.85679 -8.25650 -6.38079 0.08768 0.28208 1.42716 1.43583 1.54472 1.68166 1.88076 2.11133 2.44410 2.87327 3.09661 3.37366 3.67124 3.69325 3.79093 3.85250 3.93418 4.01264 4.05154 4.13380 4.27434 4.29122 4.33146 4.38380 4.46625 4.67106 4.71444 4.74738 4.85839 4.92529 4.94111 4.96640 5.04768 5.11887 5.13244 5.19854 5.26109 5.31208 5.34265 5.46414 5.50621 5.53491 5.69405 5.73695 6.08048 6.23097 6.33310 6.76776 6.95305 7.29093 7.31942 8.86996 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002563 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.535232 B =10924.179128 C =13192.332078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.150 4.150 14 C -0.146 4.146 15 C 0.072 3.928 16 N -0.475 5.475 17 C 0.309 3.691 18 N -0.655 5.655 19 C 0.499 3.501 20 O -0.522 6.522 21 C -0.130 4.130 22 C -0.086 4.086 23 C -0.109 4.109 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.140 4.140 27 H 0.266 0.734 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.185 0.815 35 H 0.428 0.572 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -19.242 0.436 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.010 4.010 13 C -0.176 4.176 14 C -0.167 4.167 15 C -0.085 4.085 16 N -0.190 5.190 17 C 0.077 3.923 18 N -0.303 5.303 19 C 0.287 3.713 20 O -0.395 6.395 21 C -0.170 4.170 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.179 4.179 25 C -0.178 4.178 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.193 0.807 34 H 0.202 0.798 35 H 0.267 0.733 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.901 -20.659 0.443 20.867 hybrid contribution 0.573 2.288 0.001 2.359 sum -2.327 -18.371 0.444 18.523 Atomic orbital electron populations 1.70097 1.07874 1.28132 1.50707 1.25957 0.95775 1.03429 0.94338 0.85366 0.78663 0.77996 0.78553 1.19732 1.20896 1.18398 1.21399 0.93861 0.91062 1.51898 0.91132 1.18945 0.94513 0.90949 0.96321 1.22957 0.95633 0.79645 1.00842 1.86024 1.36600 1.12998 1.88521 1.19765 0.92152 0.86290 1.02842 1.21911 0.91517 1.01817 1.02368 1.22271 1.03050 0.91075 1.00280 1.23057 0.88168 0.99756 0.97480 1.67690 1.09456 1.27256 1.14615 1.18096 0.85950 0.86981 1.01252 1.43724 1.03353 1.11214 1.72025 1.21749 0.92309 0.82101 0.75116 1.90748 1.67399 1.35038 1.46266 1.21761 0.87957 1.00682 1.06566 1.21250 0.95224 0.93717 1.02212 1.22598 0.93606 0.98156 0.98403 1.23048 0.98655 0.99761 0.96459 1.22849 0.97287 0.98752 0.98947 1.22948 0.98444 0.96373 1.00003 0.92511 0.97955 0.97961 0.91825 0.91866 0.82586 0.80738 0.79763 0.73289 0.86841 0.86586 0.92375 0.92496 0.88129 0.90598 0.90954 0.89514 0.91333 0.91089 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 13.29 21.45 0.28 -53.86 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 41.85 29.54 68.60 2.03 43.87 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.54 -28.98 9.11 25.60 0.23 -28.74 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.08 3.27 4.70 71.98 0.34 3.60 16 11 O -0.33 -12.21 9.38 -93.25 -0.88 -13.08 16 12 C 0.04 1.33 6.72 22.70 0.15 1.49 16 13 C -0.15 -4.11 9.14 22.53 0.21 -3.91 16 14 C -0.15 -3.25 10.10 22.36 0.23 -3.02 16 15 C 0.07 1.84 11.17 84.64 0.95 2.79 16 16 N -0.47 -15.90 7.88 -192.59 -1.52 -17.41 16 17 C 0.31 10.41 7.45 132.99 0.99 11.40 16 18 N -0.65 -19.50 5.39 -308.03 -1.66 -21.16 16 19 C 0.50 14.19 7.79 87.66 0.68 14.88 16 20 O -0.52 -18.60 14.24 -3.05 -0.04 -18.64 16 21 C -0.13 -2.45 5.70 29.85 0.17 -2.28 16 22 C -0.09 -1.63 4.33 30.60 0.13 -1.50 16 23 C -0.11 -1.60 3.64 -10.27 -0.04 -1.64 16 24 C -0.14 -1.99 7.65 31.18 0.24 -1.75 16 25 C -0.14 -1.78 8.09 31.18 0.25 -1.53 16 26 C -0.14 -1.96 7.65 31.12 0.24 -1.73 16 27 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.06 2.32 7.68 -2.39 -0.02 2.30 16 31 H 0.06 2.31 7.71 -2.39 -0.02 2.29 16 32 H 0.16 3.85 6.44 -2.91 -0.02 3.83 16 33 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.43 11.40 8.04 -92.71 -0.75 10.65 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.06 1.23 7.83 -2.39 -0.02 1.21 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -70.29 382.32 3.83 -66.45 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.23 Total: 23.44 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.39 Total: -9.60 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -2.89 Total: -92.44 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.92 Total: -31.73 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -70.29 3.83 -66.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176393177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds