Wall clock time and date at job start Tue Mar 31 2020 11:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47140 * 239.99308 * 3 2 1 5 5 H 1.48497 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99843 * 3 2 1 7 7 C 1.37879 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 270.00109 * 10 9 7 12 12 C 1.50705 * 109.47066 * 269.99622 * 11 10 9 13 13 C 1.38671 * 120.42229 * 269.72527 * 12 11 10 14 14 C 1.38622 * 118.42103 * 179.78425 * 13 12 11 15 15 C 1.38228 * 119.16441 * 0.50662 * 14 13 12 16 16 N 1.31855 * 120.75662 * 359.73156 * 15 14 13 17 17 C 1.31887 * 121.73026 * 359.97438 * 16 15 14 18 18 C 1.34779 * 120.00050 * 90.00049 * 10 9 7 19 19 O 1.21273 * 120.00093 * 180.02562 * 18 10 9 20 20 C 1.50706 * 119.99767 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46735 * 180.02562 * 20 18 10 22 22 C 1.52997 * 109.47060 * 180.02562 * 21 20 18 23 23 H 1.09001 * 110.80472 * 308.63118 * 22 21 20 24 24 C 1.54808 * 110.91003 * 185.00108 * 22 21 20 25 25 C 1.54106 * 104.19004 * 220.92095 * 24 22 21 26 26 O 1.43741 * 107.29185 * 357.96946 * 25 24 22 27 27 C 1.44389 * 106.97795 * 26.51336 * 26 25 24 28 28 H 0.97005 * 119.99425 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47436 * 59.99898 * 9 7 2 30 30 H 1.09003 * 109.47454 * 299.99738 * 9 7 2 31 31 H 1.08998 * 109.47205 * 29.99486 * 11 10 9 32 32 H 1.08997 * 109.47416 * 150.00347 * 11 10 9 33 33 H 1.08006 * 120.78559 * 0.02562 * 13 12 11 34 34 H 1.08003 * 120.42084 * 180.26530 * 14 13 12 35 35 H 1.08000 * 119.62170 * 179.75049 * 15 14 13 36 36 H 1.08000 * 119.61591 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.46797 * 60.00350 * 20 18 10 38 38 H 1.08992 * 109.47518 * 300.00347 * 20 18 10 39 39 H 1.09002 * 109.47398 * 300.00410 * 21 20 18 40 40 H 1.09001 * 109.47194 * 60.00591 * 21 20 18 41 41 H 1.09000 * 110.48816 * 339.60190 * 24 22 21 42 42 H 1.09005 * 110.48420 * 102.11135 * 24 22 21 43 43 H 1.08994 * 109.87872 * 117.39414 * 25 24 22 44 44 H 1.09004 * 109.87746 * 238.54857 * 25 24 22 45 45 H 1.08990 * 110.61836 * 201.43775 * 27 26 25 46 46 H 1.09003 * 110.61553 * 78.43596 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6788 -4.1695 -1.2682 12 6 1.7620 -5.2837 -1.7032 13 6 2.0110 -6.5908 -1.3127 14 6 1.1384 -7.5825 -1.7328 15 6 0.0626 -7.2396 -2.5302 16 7 -0.1404 -5.9864 -2.8863 17 6 0.6656 -5.0165 -2.5005 18 6 2.6407 -4.1250 1.1678 19 8 3.4291 -5.0465 1.1678 20 6 2.1515 -3.5519 2.4729 21 6 2.7980 -4.3073 3.6358 22 6 2.3009 -3.7259 4.9608 23 1 2.4218 -2.6427 4.9779 24 6 3.0282 -4.3820 6.1595 25 6 1.9176 -4.5899 7.2075 26 8 0.7043 -4.0507 6.6569 27 6 0.8250 -4.1225 5.2198 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.6865 -3.3879 -2.0278 32 1 3.6882 -4.5597 -1.1379 33 1 2.8625 -6.8299 -0.6927 34 1 1.2991 -8.6108 -1.4441 35 1 -0.6197 -8.0070 -2.8651 36 1 0.4668 -4.0016 -2.8120 37 1 1.0678 -3.6535 2.5308 38 1 2.4211 -2.4974 2.5304 39 1 2.5287 -5.3620 3.5784 40 1 3.8816 -4.2053 3.5777 41 1 3.4602 -5.3388 5.8664 42 1 3.8013 -3.7180 6.5465 43 1 1.7926 -5.6537 7.4089 44 1 2.1729 -4.0639 8.1275 45 1 0.1478 -3.4148 4.7419 46 1 0.6328 -5.1364 4.8687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177399486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:19 Heat of formation + Delta-G solvation = -64.025368 kcal Electronic energy + Delta-G solvation = -26859.574468 eV Core-core repulsion = 23134.452489 eV Total energy + Delta-G solvation = -3725.121979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10260 -39.53026 -38.82233 -35.36674 -34.29541 -33.07450 -32.15539 -31.42805 -30.63845 -28.56323 -27.54447 -26.09270 -24.01042 -23.42504 -22.83901 -22.37572 -21.53310 -20.24634 -18.36363 -16.98885 -16.74444 -16.46768 -16.42174 -15.90140 -15.54436 -15.39544 -15.31435 -15.07354 -14.54509 -14.35127 -13.82309 -13.57759 -13.26375 -12.88491 -12.86797 -12.76552 -12.61530 -12.29020 -11.92970 -11.77545 -11.64942 -11.53815 -11.23064 -11.10562 -11.01821 -10.85926 -10.71609 -10.57640 -10.32334 -10.24014 -9.88623 -9.67062 -9.61288 -9.25039 -9.20056 -8.75264 -8.59544 -7.84912 -6.23994 -4.32399 1.29020 1.51132 3.20317 3.26430 3.26559 3.34052 3.74765 3.96600 4.19120 4.29358 4.55688 4.65776 4.78292 4.90056 5.01027 5.06991 5.09439 5.15409 5.22001 5.25939 5.29198 5.34821 5.51930 5.54362 5.62994 5.69504 5.73260 5.82335 5.85130 5.91363 5.95844 6.01755 6.10909 6.15357 6.23881 6.33742 6.40975 6.53435 6.58277 6.67608 6.86660 6.92431 7.11014 7.42213 7.69753 7.98107 8.17554 8.23095 8.71672 8.92220 9.36142 10.82547 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007193 B = 0.005071 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.748309 B = 5519.854588 C = 8393.725318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.591 5.591 11 C 0.160 3.840 12 C -0.144 4.144 13 C -0.056 4.056 14 C -0.182 4.182 15 C 0.089 3.911 16 N -0.489 5.489 17 C 0.114 3.886 18 C 0.519 3.481 19 O -0.577 6.577 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.122 4.122 23 H 0.089 0.911 24 C -0.152 4.152 25 C 0.047 3.953 26 O -0.382 6.382 27 C 0.049 3.951 28 H 0.267 0.733 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -10.710 4.777 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.118 3.882 10 N -0.321 5.321 11 C 0.036 3.964 12 C -0.147 4.147 13 C -0.083 4.083 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.308 3.692 19 O -0.459 6.459 20 C -0.176 4.176 21 C -0.127 4.127 22 C -0.141 4.141 23 H 0.107 0.893 24 C -0.190 4.190 25 C -0.030 4.030 26 O -0.301 6.301 27 C -0.028 4.028 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.681 -10.740 4.358 11.897 hybrid contribution 1.210 0.777 0.375 1.486 sum 3.891 -9.963 4.733 11.697 Atomic orbital electron populations 1.69913 1.05993 1.27544 1.49176 1.24934 0.94829 0.99252 0.94622 0.86583 0.79574 0.82649 0.78835 1.20116 1.21123 1.20094 1.21424 0.93539 0.90379 1.52673 0.92098 1.19460 0.87454 0.82446 0.98795 1.48275 1.45572 1.34483 1.03743 1.20120 0.95811 0.93264 0.87213 1.21444 0.98638 0.95991 0.98672 1.21657 0.98614 0.92186 0.95841 1.22102 0.96975 1.00406 1.00679 1.22695 0.95783 0.93558 0.94781 1.67703 1.28958 1.00810 1.22296 1.22813 0.89637 0.98562 0.93282 1.20559 0.80532 0.82129 0.85967 1.90555 1.36516 1.30697 1.88092 1.21649 1.01755 1.02525 0.91630 1.21283 1.00883 0.99364 0.91165 1.22800 0.94964 1.01482 0.94815 0.89263 1.22995 0.98579 1.01848 0.95591 1.23125 0.84487 0.98325 0.97071 1.88858 1.37636 1.83949 1.19669 1.23725 0.96675 1.01271 0.81085 0.92354 0.94640 0.94318 0.89144 0.89891 0.84499 0.85301 0.83307 0.82518 0.89449 0.87668 0.91557 0.91077 0.90529 0.90569 0.92726 0.90224 0.88519 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.29 55.43 0.74 -22.91 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.26 9.28 -34.44 -0.32 -13.58 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.24 5.29 4.97 -5.19 -0.03 5.27 16 10 N -0.59 -11.52 2.44 -176.43 -0.43 -11.95 16 11 C 0.16 2.76 5.56 -5.19 -0.03 2.74 16 12 C -0.14 -2.34 5.48 -104.48 -0.57 -2.91 16 13 C -0.06 -0.85 9.86 -39.28 -0.39 -1.23 16 14 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 15 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 16 N -0.49 -7.96 10.36 -13.25 -0.14 -8.09 16 17 C 0.11 1.88 10.86 -17.55 -0.19 1.69 16 18 C 0.52 9.90 7.67 -10.98 -0.08 9.82 16 19 O -0.58 -11.60 15.22 5.56 0.08 -11.51 16 20 C -0.14 -2.27 4.15 -27.88 -0.12 -2.38 16 21 C -0.09 -1.25 3.90 -26.73 -0.10 -1.36 16 22 C -0.12 -1.53 3.09 -88.61 -0.27 -1.80 16 23 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 24 C -0.15 -1.62 6.60 -25.20 -0.17 -1.78 16 25 C 0.05 0.51 7.70 37.74 0.29 0.80 16 26 O -0.38 -5.35 11.52 -35.23 -0.41 -5.75 16 27 C 0.05 0.63 6.63 38.21 0.25 0.89 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 30 H 0.04 0.90 6.44 -51.93 -0.33 0.56 16 31 H 0.09 1.52 8.02 -51.93 -0.42 1.11 16 32 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 33 H 0.14 2.06 7.71 -52.48 -0.40 1.66 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.16 2.53 8.06 -52.49 -0.42 2.10 16 37 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 38 H 0.11 1.88 8.00 -51.93 -0.42 1.47 16 39 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 40 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.08 0.76 7.86 -51.93 -0.41 0.36 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -28.60 381.63 -9.16 -37.75 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.32 Total: 5.87 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.42 Total: -4.00 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.17 Total: -42.95 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.32 Total: -17.26 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.60 -9.16 -37.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177399486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.273 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds