Wall clock time and date at job start Tue Mar 31 2020 11:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47140 * 239.99308 * 3 2 1 5 5 H 1.48497 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99843 * 3 2 1 7 7 C 1.37879 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 270.00109 * 10 9 7 12 12 C 1.50705 * 109.47066 * 269.99622 * 11 10 9 13 13 C 1.38671 * 120.42229 * 269.72527 * 12 11 10 14 14 C 1.38622 * 118.42103 * 179.78425 * 13 12 11 15 15 C 1.38228 * 119.16441 * 0.50662 * 14 13 12 16 16 N 1.31855 * 120.75662 * 359.73156 * 15 14 13 17 17 C 1.31887 * 121.73026 * 359.97438 * 16 15 14 18 18 C 1.34779 * 120.00050 * 90.00049 * 10 9 7 19 19 O 1.21273 * 120.00093 * 180.02562 * 18 10 9 20 20 C 1.50706 * 119.99767 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46735 * 180.02562 * 20 18 10 22 22 C 1.52997 * 109.47060 * 180.02562 * 21 20 18 23 23 H 1.09001 * 110.80472 * 308.63118 * 22 21 20 24 24 C 1.54808 * 110.91003 * 185.00108 * 22 21 20 25 25 C 1.54106 * 104.19004 * 220.92095 * 24 22 21 26 26 O 1.43741 * 107.29185 * 357.96946 * 25 24 22 27 27 C 1.44389 * 106.97795 * 26.51336 * 26 25 24 28 28 H 0.97005 * 119.99425 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47436 * 59.99898 * 9 7 2 30 30 H 1.09003 * 109.47454 * 299.99738 * 9 7 2 31 31 H 1.08998 * 109.47205 * 29.99486 * 11 10 9 32 32 H 1.08997 * 109.47416 * 150.00347 * 11 10 9 33 33 H 1.08006 * 120.78559 * 0.02562 * 13 12 11 34 34 H 1.08003 * 120.42084 * 180.26530 * 14 13 12 35 35 H 1.08000 * 119.62170 * 179.75049 * 15 14 13 36 36 H 1.08000 * 119.61591 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.46797 * 60.00350 * 20 18 10 38 38 H 1.08992 * 109.47518 * 300.00347 * 20 18 10 39 39 H 1.09002 * 109.47398 * 300.00410 * 21 20 18 40 40 H 1.09001 * 109.47194 * 60.00591 * 21 20 18 41 41 H 1.09000 * 110.48816 * 339.60190 * 24 22 21 42 42 H 1.09005 * 110.48420 * 102.11135 * 24 22 21 43 43 H 1.08994 * 109.87872 * 117.39414 * 25 24 22 44 44 H 1.09004 * 109.87746 * 238.54857 * 25 24 22 45 45 H 1.08990 * 110.61836 * 201.43775 * 27 26 25 46 46 H 1.09003 * 110.61553 * 78.43596 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6788 -4.1695 -1.2682 12 6 1.7620 -5.2837 -1.7032 13 6 2.0110 -6.5908 -1.3127 14 6 1.1384 -7.5825 -1.7328 15 6 0.0626 -7.2396 -2.5302 16 7 -0.1404 -5.9864 -2.8863 17 6 0.6656 -5.0165 -2.5005 18 6 2.6407 -4.1250 1.1678 19 8 3.4291 -5.0465 1.1678 20 6 2.1515 -3.5519 2.4729 21 6 2.7980 -4.3073 3.6358 22 6 2.3009 -3.7259 4.9608 23 1 2.4218 -2.6427 4.9779 24 6 3.0282 -4.3820 6.1595 25 6 1.9176 -4.5899 7.2075 26 8 0.7043 -4.0507 6.6569 27 6 0.8250 -4.1225 5.2198 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.6865 -3.3879 -2.0278 32 1 3.6882 -4.5597 -1.1379 33 1 2.8625 -6.8299 -0.6927 34 1 1.2991 -8.6108 -1.4441 35 1 -0.6197 -8.0070 -2.8651 36 1 0.4668 -4.0016 -2.8120 37 1 1.0678 -3.6535 2.5308 38 1 2.4211 -2.4974 2.5304 39 1 2.5287 -5.3620 3.5784 40 1 3.8816 -4.2053 3.5777 41 1 3.4602 -5.3388 5.8664 42 1 3.8013 -3.7180 6.5465 43 1 1.7926 -5.6537 7.4089 44 1 2.1729 -4.0639 8.1275 45 1 0.1478 -3.4148 4.7419 46 1 0.6328 -5.1364 4.8687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177399486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:18 Heat of formation + Delta-G solvation = -78.952492 kcal Electronic energy + Delta-G solvation = -26860.221757 eV Core-core repulsion = 23134.452489 eV Total energy + Delta-G solvation = -3725.769268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39312 -40.65490 -40.10698 -36.92573 -35.52647 -34.76144 -33.57881 -32.64286 -31.69597 -29.65553 -29.29585 -27.45847 -25.34048 -24.82486 -24.30878 -23.39623 -22.69363 -21.29302 -19.89365 -18.67301 -18.11253 -17.81176 -17.52386 -17.11338 -16.99973 -16.75032 -16.49008 -16.23109 -16.12028 -15.63045 -15.00741 -14.76070 -14.46868 -14.31674 -14.16999 -13.99886 -13.86269 -13.71191 -13.49926 -13.20984 -13.06549 -12.77721 -12.67317 -12.47806 -12.41174 -12.26778 -12.06989 -11.88245 -11.74912 -11.59334 -11.39471 -10.90272 -10.68488 -10.62950 -10.51910 -10.45561 -9.95661 -9.47902 -8.19138 -6.33693 0.12471 0.33391 1.43659 1.45042 1.52017 1.78006 2.30021 2.45534 2.94316 3.02518 3.11806 3.54032 3.58573 3.67652 3.83896 3.88913 3.93710 4.06631 4.09699 4.11527 4.17764 4.27817 4.33815 4.42653 4.50641 4.64778 4.71170 4.73609 4.75867 4.82014 4.85538 4.87558 4.88247 4.93402 5.06919 5.11039 5.19157 5.22432 5.25865 5.37886 5.38481 5.65509 5.77853 5.81242 5.92547 6.06290 6.56460 6.81827 7.01190 7.30612 7.41991 8.86110 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007193 B = 0.005071 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.748309 B = 5519.854588 C = 8393.725318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.255 3.745 10 N -0.594 5.594 11 C 0.161 3.839 12 C -0.154 4.154 13 C -0.064 4.064 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.099 3.901 18 C 0.514 3.486 19 O -0.585 6.585 20 C -0.131 4.131 21 C -0.075 4.075 22 C -0.119 4.119 23 H 0.082 0.918 24 C -0.146 4.146 25 C 0.041 3.959 26 O -0.405 6.405 27 C 0.048 3.952 28 H 0.267 0.733 29 H 0.019 0.981 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.167 0.833 35 H 0.186 0.814 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -12.128 5.511 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.135 3.865 10 N -0.324 5.324 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.069 4.069 16 N -0.220 5.220 17 C -0.057 4.057 18 C 0.304 3.696 19 O -0.468 6.468 20 C -0.171 4.171 21 C -0.113 4.113 22 C -0.138 4.138 23 H 0.100 0.900 24 C -0.184 4.184 25 C -0.035 4.035 26 O -0.325 6.325 27 C -0.029 4.029 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.184 0.816 35 H 0.203 0.797 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.409 -12.168 5.090 13.623 hybrid contribution 0.981 1.108 0.121 1.485 sum 4.390 -11.060 5.211 12.990 Atomic orbital electron populations 1.70011 1.07228 1.28188 1.50344 1.25604 0.95454 1.02142 0.94413 0.85686 0.78428 0.79139 0.78914 1.19772 1.21027 1.19572 1.21622 0.93331 0.91406 1.51933 0.92649 1.19057 0.87406 0.82713 0.97360 1.48245 1.45216 1.34000 1.04919 1.20149 0.96171 0.93677 0.86247 1.21279 0.98651 0.96278 0.99556 1.21762 0.99183 0.92112 0.96015 1.22469 0.95594 1.01651 0.99106 1.23341 0.96331 0.93221 0.93962 1.67709 1.29272 1.01927 1.23100 1.22713 0.90241 0.98628 0.94153 1.20942 0.80283 0.81985 0.86427 1.90538 1.36880 1.31080 1.88274 1.21639 1.01981 1.01879 0.91589 1.21161 1.00327 0.99018 0.90805 1.22724 0.95122 1.01153 0.94828 0.89982 1.22985 0.98615 1.02386 0.94422 1.23334 0.83408 0.99290 0.97477 1.88832 1.39275 1.84437 1.19911 1.23719 0.96734 1.01397 0.81027 0.92389 0.96257 0.95416 0.89488 0.89707 0.84577 0.81595 0.79743 0.83490 0.89372 0.89066 0.91385 0.91399 0.89584 0.89315 0.91422 0.88748 0.89380 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.67 13.29 21.45 0.28 -49.38 16 2 C 0.02 1.25 5.46 84.65 0.46 1.72 16 3 Si 0.95 40.79 29.54 68.60 2.03 42.81 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -27.10 9.28 25.60 0.24 -26.86 16 8 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 9 C 0.26 11.71 4.97 85.63 0.43 12.13 16 10 N -0.59 -23.63 2.44 -830.49 -2.03 -25.65 16 11 C 0.16 5.68 5.56 85.64 0.48 6.16 16 12 C -0.15 -5.04 5.48 -19.77 -0.11 -5.15 16 13 C -0.06 -1.85 9.86 22.46 0.22 -1.63 16 14 C -0.17 -3.93 10.11 22.36 0.23 -3.70 16 15 C 0.09 2.20 11.18 84.69 0.95 3.14 16 16 N -0.51 -16.28 10.36 -195.84 -2.03 -18.30 16 17 C 0.10 3.33 10.86 84.67 0.92 4.25 16 18 C 0.51 19.69 7.67 87.66 0.67 20.36 16 19 O -0.59 -23.25 15.22 -3.01 -0.05 -23.30 16 20 C -0.13 -4.41 4.15 29.85 0.12 -4.29 16 21 C -0.08 -2.06 3.90 30.59 0.12 -1.94 16 22 C -0.12 -2.89 3.09 -9.49 -0.03 -2.92 16 23 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 24 C -0.15 -2.80 6.60 31.59 0.21 -2.60 16 25 C 0.04 0.81 7.70 72.36 0.56 1.37 16 26 O -0.40 -10.91 11.52 -148.98 -1.72 -12.63 16 27 C 0.05 1.21 6.63 72.67 0.48 1.69 16 28 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16 29 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 30 H 0.03 1.33 6.44 -2.39 -0.02 1.32 16 31 H 0.09 3.05 8.02 -2.39 -0.02 3.03 16 32 H 0.08 2.92 7.37 -2.39 -0.02 2.91 16 33 H 0.14 3.93 7.71 -2.91 -0.02 3.91 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.09 2.93 6.99 -2.39 -0.02 2.92 16 38 H 0.09 3.33 8.00 -2.39 -0.02 3.31 16 39 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 40 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 41 H 0.09 1.50 7.86 -2.39 -0.02 1.48 16 42 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.07 1.59 7.93 -2.39 -0.02 1.57 16 Total: -1.00 -60.64 381.63 3.39 -57.26 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.95 Total: 27.45 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.94 Total: 1.74 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -3.77 Total: -93.34 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.76 Total: -35.93 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -60.64 3.39 -57.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177399486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.697 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds