Wall clock time and date at job start Tue Mar 31 2020 11:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00359 * 3 2 1 5 5 H 1.48502 * 109.47160 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.47322 * 150.00150 * 3 2 1 7 7 C 1.37882 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00057 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99686 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46744 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00278 * 269.99901 * 10 9 7 12 12 C 1.50692 * 109.47067 * 270.00122 * 11 10 9 13 13 C 1.38671 * 120.41863 * 90.00057 * 12 11 10 14 14 C 1.38635 * 118.42515 * 179.97438 * 13 12 11 15 15 C 1.38228 * 119.15533 * 359.97438 * 14 13 12 16 16 N 1.31856 * 120.76410 * 0.02562 * 15 14 13 17 17 C 1.31878 * 121.72773 * 359.70044 * 16 15 14 18 18 C 1.34780 * 119.99461 * 90.00180 * 10 9 7 19 19 O 1.21286 * 119.99618 * 180.02562 * 18 10 9 20 20 C 1.50699 * 120.00197 * 359.97438 * 18 10 9 21 21 C 1.52998 * 109.46725 * 180.02562 * 20 18 10 22 22 C 1.53001 * 109.46795 * 180.02562 * 21 20 18 23 23 H 1.09000 * 110.83780 * 51.34919 * 22 21 20 24 24 C 1.54818 * 110.90886 * 174.99954 * 22 21 20 25 25 C 1.54097 * 104.18808 * 139.07334 * 24 22 21 26 26 O 1.43745 * 107.29442 * 2.03270 * 25 24 22 27 27 C 1.44382 * 106.97554 * 333.48168 * 26 25 24 28 28 H 0.97000 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 59.99938 * 9 7 2 30 30 H 1.08997 * 109.47142 * 299.99037 * 9 7 2 31 31 H 1.09006 * 109.46767 * 29.99968 * 11 10 9 32 32 H 1.09003 * 109.47223 * 149.99789 * 11 10 9 33 33 H 1.08001 * 120.79517 * 0.02562 * 13 12 11 34 34 H 1.07991 * 120.42574 * 179.97438 * 14 13 12 35 35 H 1.07995 * 119.61707 * 179.97438 * 15 14 13 36 36 H 1.08005 * 119.62014 * 180.31560 * 17 16 15 37 37 H 1.09005 * 109.46886 * 60.00565 * 20 18 10 38 38 H 1.08994 * 109.47404 * 300.00628 * 20 18 10 39 39 H 1.08996 * 109.47594 * 60.00134 * 21 20 18 40 40 H 1.08999 * 109.47290 * 299.99959 * 21 20 18 41 41 H 1.09004 * 110.48564 * 20.40044 * 24 22 21 42 42 H 1.08989 * 110.60109 * 257.81146 * 24 22 21 43 43 H 1.08998 * 109.88273 * 242.60534 * 25 24 22 44 44 H 1.08997 * 109.87725 * 121.45198 * 25 24 22 45 45 H 1.08999 * 110.61481 * 158.56165 * 27 26 25 46 46 H 1.08997 * 110.62085 * 281.56061 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2677 12 6 5.6679 -3.0288 1.7021 13 6 5.9861 -1.9420 2.5024 14 6 7.3087 -1.7638 2.8781 15 6 8.2593 -2.6695 2.4460 16 7 7.9203 -3.6919 1.6855 17 6 6.6716 -3.8954 1.3133 18 6 4.2240 -3.2108 -1.1682 19 8 4.6278 -4.3545 -1.1682 20 6 3.9718 -2.5008 -2.4733 21 6 4.3023 -3.4386 -3.6362 22 6 4.0469 -2.7176 -4.9612 23 1 4.5490 -1.7503 -4.9793 24 6 4.4886 -3.5919 -6.1601 25 6 3.3769 -3.3865 -7.2072 26 8 2.4392 -2.4466 -6.6562 27 6 2.5270 -2.5567 -5.2193 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 3.5640 -2.8813 2.0276 32 1 4.0774 -4.3350 1.1377 33 1 5.2218 -1.2510 2.8261 34 1 7.5926 -0.9282 3.5004 35 1 9.2918 -2.5377 2.7338 36 1 6.4311 -4.7470 0.6941 37 1 4.6018 -1.6131 -2.5317 38 1 2.9238 -2.2069 -2.5305 39 1 3.6722 -4.3260 -3.5777 40 1 5.3503 -3.7328 -3.5791 41 1 4.5474 -4.6400 -5.8667 42 1 5.4477 -3.2515 -6.5501 43 1 2.8772 -4.3341 -7.4081 44 1 3.8036 -2.9879 -8.1275 45 1 2.1501 -1.6525 -4.7413 46 1 1.9830 -3.4333 -4.8675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177399501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:21 Heat of formation + Delta-G solvation = -59.037357 kcal Electronic energy + Delta-G solvation = -26922.565634 eV Core-core repulsion = 23197.659952 eV Total energy + Delta-G solvation = -3724.905683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19819 -39.53362 -38.88481 -35.49864 -34.31202 -33.04861 -32.23062 -31.58698 -30.65497 -28.57620 -28.15543 -26.20777 -24.02327 -23.44902 -22.56857 -22.35648 -21.59769 -20.25283 -18.38758 -17.25422 -16.90308 -16.62269 -16.47168 -15.96677 -15.59482 -15.48261 -15.34150 -15.08446 -14.59659 -14.26619 -13.80195 -13.62993 -13.28462 -13.13663 -12.92723 -12.87559 -12.57239 -12.50259 -12.17304 -11.88539 -11.64177 -11.58709 -11.48985 -11.10842 -11.00125 -10.90911 -10.70832 -10.57365 -10.40064 -10.31599 -9.80292 -9.66409 -9.62046 -9.36483 -9.26804 -8.85196 -8.76872 -7.91179 -6.30076 -4.32677 1.20445 1.40681 3.10170 3.17379 3.20496 3.24519 3.64143 3.99168 4.11490 4.18184 4.55800 4.57508 4.77387 4.89265 4.93332 4.99894 5.06452 5.07753 5.12614 5.20640 5.22440 5.33058 5.47484 5.53896 5.58619 5.69323 5.73464 5.77342 5.85329 5.88385 5.97800 6.01338 6.07451 6.09752 6.12448 6.21385 6.32014 6.41695 6.47909 6.52806 6.56911 6.84199 6.91470 7.18019 7.34356 8.00287 8.09102 8.30381 8.73237 8.82290 9.28815 10.82272 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.004767 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.377868 B = 5871.695420 C = 8282.628305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.210 3.790 10 N -0.587 5.587 11 C 0.160 3.840 12 C -0.145 4.145 13 C -0.063 4.063 14 C -0.179 4.179 15 C 0.089 3.911 16 N -0.491 5.491 17 C 0.118 3.882 18 C 0.521 3.479 19 O -0.568 6.568 20 C -0.140 4.140 21 C -0.090 4.090 22 C -0.121 4.121 23 H 0.085 0.915 24 C -0.152 4.152 25 C 0.047 3.953 26 O -0.382 6.382 27 C 0.048 3.952 28 H 0.267 0.733 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 -3.183 -3.066 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.088 3.912 10 N -0.317 5.317 11 C 0.036 3.964 12 C -0.148 4.148 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.068 4.068 16 N -0.200 5.200 17 C -0.040 4.040 18 C 0.310 3.690 19 O -0.449 6.449 20 C -0.179 4.179 21 C -0.128 4.128 22 C -0.140 4.140 23 H 0.103 0.897 24 C -0.190 4.190 25 C -0.031 4.031 26 O -0.301 6.301 27 C -0.028 4.028 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.710 -4.078 -3.458 12.873 hybrid contribution -0.243 1.710 0.528 1.806 sum 11.467 -2.368 -2.931 12.070 Atomic orbital electron populations 1.69879 1.06200 1.27302 1.49057 1.24860 0.94689 0.98800 0.94186 0.86981 0.80390 0.84130 0.79063 1.19733 1.20814 1.18989 1.21350 0.88889 0.95049 1.52871 0.90234 1.19824 0.95896 0.77878 0.97559 1.47942 1.63721 1.15907 1.04118 1.20144 0.90283 0.99019 0.86944 1.21464 0.98676 0.96295 0.98414 1.21632 0.96655 0.95985 0.94642 1.22105 0.94097 1.01179 1.02515 1.22712 0.99678 0.90489 0.93934 1.67717 1.20336 1.20470 1.11441 1.22870 0.87266 0.98328 0.95498 1.20550 0.76372 0.86253 0.85781 1.90583 1.48088 1.18321 1.87920 1.21694 1.05270 0.99173 0.91783 1.21287 1.02555 0.97885 0.91029 1.22788 0.96667 0.99723 0.94829 0.89667 1.22991 0.99243 1.01168 0.95585 1.23122 0.89761 0.93193 0.96974 1.88863 1.61007 1.60466 1.19773 1.23755 0.95259 1.02888 0.80921 0.92249 0.95076 0.95179 0.89033 0.89383 0.84668 0.85089 0.83250 0.82320 0.89598 0.87400 0.91024 0.91272 0.90441 0.90700 0.92662 0.90310 0.88301 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.96 55.43 0.77 -24.00 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 18.96 27.47 -169.99 -4.67 14.29 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.46 6.54 56.52 0.37 -5.09 16 7 C -0.54 -13.40 9.83 -34.44 -0.34 -13.74 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.21 4.30 4.03 -5.19 -0.02 4.28 16 10 N -0.59 -11.08 2.44 -176.43 -0.43 -11.51 16 11 C 0.16 2.69 5.56 -5.20 -0.03 2.66 16 12 C -0.15 -2.26 5.48 -104.49 -0.57 -2.83 16 13 C -0.06 -0.88 9.86 -39.28 -0.39 -1.26 16 14 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 15 C 0.09 1.15 11.18 -17.54 -0.20 0.95 16 16 N -0.49 -7.63 10.36 -13.25 -0.14 -7.77 16 17 C 0.12 1.87 10.86 -17.55 -0.19 1.68 16 18 C 0.52 9.76 7.67 -10.98 -0.08 9.68 16 19 O -0.57 -11.35 15.15 5.55 0.08 -11.27 16 20 C -0.14 -2.26 4.15 -27.88 -0.12 -2.38 16 21 C -0.09 -1.25 3.90 -26.73 -0.10 -1.36 16 22 C -0.12 -1.51 3.10 -88.60 -0.27 -1.79 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 C -0.15 -1.62 6.60 -25.20 -0.17 -1.78 16 25 C 0.05 0.52 7.70 37.73 0.29 0.81 16 26 O -0.38 -5.56 11.52 -35.23 -0.41 -5.96 16 27 C 0.05 0.66 6.63 38.21 0.25 0.92 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 30 H 0.03 0.60 5.87 -51.93 -0.30 0.30 16 31 H 0.09 1.50 8.03 -51.93 -0.42 1.09 16 32 H 0.09 1.48 7.37 -51.93 -0.38 1.09 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.16 2.58 7.64 -52.48 -0.40 2.18 16 37 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 38 H 0.11 1.89 7.58 -51.93 -0.39 1.49 16 39 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 40 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.08 0.78 7.86 -51.93 -0.41 0.38 16 42 H 0.07 0.70 8.14 -51.94 -0.42 0.28 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -29.58 377.88 -8.80 -38.38 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.28 Total: 6.97 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.43 Total: -4.83 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.21 Total: -43.28 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.32 Total: -17.23 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.67 Total: 14.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.58 -8.80 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177399501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.655 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds