Wall clock time and date at job start Tue Mar 31 2020 11:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00359 * 3 2 1 5 5 H 1.48502 * 109.47160 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.47322 * 150.00150 * 3 2 1 7 7 C 1.37882 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00057 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99686 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46744 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00278 * 269.99901 * 10 9 7 12 12 C 1.50692 * 109.47067 * 270.00122 * 11 10 9 13 13 C 1.38671 * 120.41863 * 90.00057 * 12 11 10 14 14 C 1.38635 * 118.42515 * 179.97438 * 13 12 11 15 15 C 1.38228 * 119.15533 * 359.97438 * 14 13 12 16 16 N 1.31856 * 120.76410 * 0.02562 * 15 14 13 17 17 C 1.31878 * 121.72773 * 359.70044 * 16 15 14 18 18 C 1.34780 * 119.99461 * 90.00180 * 10 9 7 19 19 O 1.21286 * 119.99618 * 180.02562 * 18 10 9 20 20 C 1.50699 * 120.00197 * 359.97438 * 18 10 9 21 21 C 1.52998 * 109.46725 * 180.02562 * 20 18 10 22 22 C 1.53001 * 109.46795 * 180.02562 * 21 20 18 23 23 H 1.09000 * 110.83780 * 51.34919 * 22 21 20 24 24 C 1.54818 * 110.90886 * 174.99954 * 22 21 20 25 25 C 1.54097 * 104.18808 * 139.07334 * 24 22 21 26 26 O 1.43745 * 107.29442 * 2.03270 * 25 24 22 27 27 C 1.44382 * 106.97554 * 333.48168 * 26 25 24 28 28 H 0.97000 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 59.99938 * 9 7 2 30 30 H 1.08997 * 109.47142 * 299.99037 * 9 7 2 31 31 H 1.09006 * 109.46767 * 29.99968 * 11 10 9 32 32 H 1.09003 * 109.47223 * 149.99789 * 11 10 9 33 33 H 1.08001 * 120.79517 * 0.02562 * 13 12 11 34 34 H 1.07991 * 120.42574 * 179.97438 * 14 13 12 35 35 H 1.07995 * 119.61707 * 179.97438 * 15 14 13 36 36 H 1.08005 * 119.62014 * 180.31560 * 17 16 15 37 37 H 1.09005 * 109.46886 * 60.00565 * 20 18 10 38 38 H 1.08994 * 109.47404 * 300.00628 * 20 18 10 39 39 H 1.08996 * 109.47594 * 60.00134 * 21 20 18 40 40 H 1.08999 * 109.47290 * 299.99959 * 21 20 18 41 41 H 1.09004 * 110.48564 * 20.40044 * 24 22 21 42 42 H 1.08989 * 110.60109 * 257.81146 * 24 22 21 43 43 H 1.08998 * 109.88273 * 242.60534 * 25 24 22 44 44 H 1.08997 * 109.87725 * 121.45198 * 25 24 22 45 45 H 1.08999 * 110.61481 * 158.56165 * 27 26 25 46 46 H 1.08997 * 110.62085 * 281.56061 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2677 12 6 5.6679 -3.0288 1.7021 13 6 5.9861 -1.9420 2.5024 14 6 7.3087 -1.7638 2.8781 15 6 8.2593 -2.6695 2.4460 16 7 7.9203 -3.6919 1.6855 17 6 6.6716 -3.8954 1.3133 18 6 4.2240 -3.2108 -1.1682 19 8 4.6278 -4.3545 -1.1682 20 6 3.9718 -2.5008 -2.4733 21 6 4.3023 -3.4386 -3.6362 22 6 4.0469 -2.7176 -4.9612 23 1 4.5490 -1.7503 -4.9793 24 6 4.4886 -3.5919 -6.1601 25 6 3.3769 -3.3865 -7.2072 26 8 2.4392 -2.4466 -6.6562 27 6 2.5270 -2.5567 -5.2193 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 3.5640 -2.8813 2.0276 32 1 4.0774 -4.3350 1.1377 33 1 5.2218 -1.2510 2.8261 34 1 7.5926 -0.9282 3.5004 35 1 9.2918 -2.5377 2.7338 36 1 6.4311 -4.7470 0.6941 37 1 4.6018 -1.6131 -2.5317 38 1 2.9238 -2.2069 -2.5305 39 1 3.6722 -4.3260 -3.5777 40 1 5.3503 -3.7328 -3.5791 41 1 4.5474 -4.6400 -5.8667 42 1 5.4477 -3.2515 -6.5501 43 1 2.8772 -4.3341 -7.4081 44 1 3.8036 -2.9879 -8.1275 45 1 2.1501 -1.6525 -4.7413 46 1 1.9830 -3.4333 -4.8675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177399501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:20 Heat of formation + Delta-G solvation = -76.080991 kcal Electronic energy + Delta-G solvation = -26923.304702 eV Core-core repulsion = 23197.659952 eV Total energy + Delta-G solvation = -3725.644750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.42405 -40.66977 -40.12896 -37.00622 -35.53411 -34.73166 -33.61860 -32.73020 -31.71028 -29.91262 -29.63529 -27.50382 -25.28156 -24.64556 -24.14564 -23.40972 -22.70874 -21.30441 -19.86931 -19.11504 -18.10585 -17.90836 -17.56396 -17.13533 -16.97294 -16.79733 -16.50937 -16.19367 -16.00410 -15.69800 -14.94944 -14.82357 -14.66949 -14.36710 -14.26738 -13.99847 -13.91509 -13.75840 -13.66875 -13.23193 -13.09445 -12.90597 -12.49463 -12.48928 -12.40282 -12.27652 -12.04039 -11.90189 -11.69943 -11.60245 -11.40533 -10.92143 -10.78624 -10.64906 -10.63634 -10.44924 -9.96005 -9.46896 -8.28497 -6.35959 0.12129 0.32672 1.40586 1.42024 1.50608 1.74497 2.27911 2.34788 2.93197 3.01707 3.05787 3.52569 3.57106 3.64760 3.81024 3.88088 3.91860 4.03675 4.09352 4.10197 4.16865 4.26010 4.35127 4.41631 4.49039 4.60632 4.66919 4.69138 4.75915 4.76586 4.82889 4.84729 4.87589 4.88101 4.92283 5.05694 5.08203 5.19751 5.24934 5.35356 5.36706 5.44883 5.64658 5.78477 5.91927 6.19011 6.59144 6.71437 7.01116 7.24346 7.35057 8.87491 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.004767 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.377868 B = 5871.695420 C = 8282.628305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.537 4.537 8 H 0.032 0.968 9 C 0.219 3.781 10 N -0.592 5.592 11 C 0.161 3.839 12 C -0.155 4.155 13 C -0.070 4.070 14 C -0.166 4.166 15 C 0.088 3.912 16 N -0.513 5.513 17 C 0.104 3.896 18 C 0.513 3.487 19 O -0.584 6.584 20 C -0.136 4.136 21 C -0.078 4.078 22 C -0.115 4.115 23 H 0.093 0.907 24 C -0.146 4.146 25 C 0.039 3.961 26 O -0.405 6.405 27 C 0.045 3.955 28 H 0.267 0.733 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.185 0.815 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.330 -1.447 -2.967 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.576 4.576 8 H 0.050 0.950 9 C 0.098 3.902 10 N -0.321 5.321 11 C 0.037 3.963 12 C -0.158 4.158 13 C -0.097 4.097 14 C -0.185 4.185 15 C -0.069 4.069 16 N -0.222 5.222 17 C -0.052 4.052 18 C 0.303 3.697 19 O -0.466 6.466 20 C -0.176 4.176 21 C -0.116 4.116 22 C -0.134 4.134 23 H 0.111 0.889 24 C -0.184 4.184 25 C -0.037 4.037 26 O -0.324 6.324 27 C -0.031 4.031 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.186 0.814 35 H 0.202 0.798 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.877 -2.372 -3.358 15.434 hybrid contribution -1.235 1.067 0.543 1.720 sum 13.642 -1.306 -2.815 13.990 Atomic orbital electron populations 1.70046 1.08389 1.28297 1.51296 1.25724 0.95324 1.02833 0.93760 0.85922 0.79989 0.78775 0.79660 1.18851 1.21387 1.15878 1.21476 0.91129 0.93173 1.51800 0.94962 1.19635 0.92884 0.79075 0.98645 1.47992 1.63575 1.15536 1.05019 1.20143 0.91698 0.98274 0.86172 1.21236 0.97316 0.97449 0.99771 1.21846 0.98044 0.95486 0.94286 1.22485 0.92836 1.01614 1.01582 1.23356 1.01558 0.89425 0.92551 1.67716 1.19909 1.21973 1.12561 1.22659 0.87915 0.98411 0.96260 1.21028 0.75956 0.86233 0.86515 1.90570 1.48820 1.18999 1.88213 1.21713 1.04447 1.00083 0.91344 1.21172 1.02337 0.97037 0.91029 1.22717 0.95668 1.00341 0.94648 0.88907 1.22984 0.99885 1.01105 0.94383 1.23351 0.89510 0.93148 0.97672 1.88835 1.62209 1.61554 1.19833 1.23720 0.96342 1.02069 0.81010 0.92342 0.93664 0.93671 0.89147 0.90352 0.83716 0.81353 0.79795 0.83908 0.87984 0.89096 0.92253 0.90893 0.89960 0.88726 0.91912 0.88413 0.89437 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.17 13.96 21.45 0.30 -53.87 16 2 C 0.02 1.18 5.47 84.66 0.46 1.64 16 3 Si 0.93 38.02 27.47 68.60 1.88 39.91 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.24 -8.43 6.54 99.48 0.65 -7.78 16 7 C -0.54 -27.05 9.83 25.60 0.25 -26.80 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 9 C 0.22 8.79 4.03 85.63 0.35 9.14 16 10 N -0.59 -22.43 2.44 -830.49 -2.03 -24.46 16 11 C 0.16 5.48 5.56 85.63 0.48 5.96 16 12 C -0.15 -4.69 5.48 -19.78 -0.11 -4.80 16 13 C -0.07 -1.79 9.86 22.47 0.22 -1.57 16 14 C -0.17 -3.40 10.11 22.36 0.23 -3.17 16 15 C 0.09 1.97 11.18 84.69 0.95 2.92 16 16 N -0.51 -15.14 10.36 -195.84 -2.03 -17.17 16 17 C 0.10 3.29 10.86 84.67 0.92 4.21 16 18 C 0.51 19.43 7.67 87.66 0.67 20.10 16 19 O -0.58 -23.85 15.15 -3.05 -0.05 -23.90 16 20 C -0.14 -4.41 4.15 29.85 0.12 -4.28 16 21 C -0.08 -2.14 3.90 30.59 0.12 -2.02 16 22 C -0.12 -2.74 3.10 -9.49 -0.03 -2.77 16 23 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 24 C -0.15 -2.81 6.60 31.59 0.21 -2.60 16 25 C 0.04 0.82 7.70 72.35 0.56 1.37 16 26 O -0.40 -11.57 11.52 -148.98 -1.72 -13.28 16 27 C 0.04 1.25 6.63 72.67 0.48 1.73 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.05 1.72 7.13 -2.39 -0.02 1.70 16 30 H 0.05 1.71 5.87 -2.39 -0.01 1.69 16 31 H 0.09 3.03 8.03 -2.38 -0.02 3.01 16 32 H 0.08 2.77 7.37 -2.39 -0.02 2.75 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.14 4.83 7.64 -2.91 -0.02 4.81 16 37 H 0.10 2.94 7.40 -2.38 -0.02 2.93 16 38 H 0.09 3.27 7.58 -2.39 -0.02 3.26 16 39 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 40 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 41 H 0.08 1.51 7.86 -2.39 -0.02 1.49 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 Total: -1.00 -65.87 377.88 3.14 -62.73 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.90 Total: 30.96 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.88 Total: -0.93 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -3.76 Total: -95.49 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.76 Total: -37.18 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.88 Total: 39.91 kcal Total: -65.87 3.14 -62.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177399501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.352 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds