Wall clock time and date at job start Tue Mar 31 2020 12:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36710 * 126.68697 * 2 1 4 4 C 1.46850 * 125.75690 * 359.97438 * 3 2 1 5 5 O 1.21677 * 119.99704 * 335.99304 * 4 3 2 6 6 N 1.34772 * 120.00158 * 155.99476 * 4 3 2 7 7 C 1.46498 * 119.99988 * 5.30079 * 6 4 3 8 8 C 1.46497 * 119.99865 * 185.29654 * 6 4 3 9 9 C 1.50700 * 109.47257 * 90.00279 * 8 6 4 10 10 H 1.08006 * 119.99525 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00293 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00218 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00056 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46907 * 89.99906 * 13 11 9 15 15 H 1.48498 * 109.47006 * 210.00075 * 13 11 9 16 16 H 1.48501 * 109.46942 * 329.99818 * 13 11 9 17 17 N 1.38185 * 108.48544 * 179.97438 * 3 2 1 18 18 H 0.97006 * 125.34464 * 179.91433 * 17 3 2 19 19 C 1.33315 * 109.30735 * 359.93383 * 17 3 2 20 20 C 1.39486 * 107.91130 * 0.14282 * 19 17 3 21 21 C 1.47094 * 121.62959 * 179.79742 * 20 19 17 22 22 O 1.21331 * 122.44148 * 168.80231 * 21 20 19 23 23 C 1.52136 * 115.11667 * 348.53547 * 21 20 19 24 24 C 1.53189 * 108.42388 * 42.72967 * 23 21 20 25 25 C 1.52996 * 109.22958 * 55.36202 * 24 23 21 26 26 C 1.53002 * 109.23015 * 174.77419 * 24 23 21 27 27 C 1.50769 * 129.22135 * 180.16095 * 19 17 3 28 28 H 1.08998 * 109.47274 * 270.03923 * 1 2 3 29 29 H 1.08997 * 109.46983 * 30.03670 * 1 2 3 30 30 H 1.09000 * 109.46905 * 150.03575 * 1 2 3 31 31 H 1.09000 * 109.47409 * 92.39939 * 7 6 4 32 32 H 1.08998 * 109.47309 * 212.40278 * 7 6 4 33 33 H 1.09000 * 109.46810 * 332.39841 * 7 6 4 34 34 H 1.09005 * 109.46841 * 210.00052 * 8 6 4 35 35 H 1.09003 * 109.47592 * 329.99959 * 8 6 4 36 36 H 0.96998 * 120.00241 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.67503 * 162.46333 * 23 21 20 38 38 H 1.08999 * 109.67639 * 282.99226 * 23 21 20 39 39 H 1.08997 * 109.47457 * 59.99935 * 25 24 23 40 40 H 1.09010 * 109.46660 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.47373 * 299.99582 * 25 24 23 42 42 H 1.09000 * 109.47425 * 59.99994 * 26 24 23 43 43 H 1.08995 * 109.47031 * 180.02562 * 26 24 23 44 44 H 1.09006 * 109.47349 * 299.99716 * 26 24 23 45 45 H 1.08995 * 109.50580 * 39.55488 * 27 19 17 46 46 H 1.09000 * 109.54475 * 279.44176 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3238 1.0963 0.0000 4 6 1.8809 2.4964 -0.0005 5 8 0.7797 2.7859 -0.4297 6 7 2.6940 3.4606 0.4743 7 6 4.0614 3.1301 0.8829 8 6 2.2103 4.8393 0.5818 9 6 1.5867 5.0486 1.9377 10 1 1.5536 4.2357 2.6481 11 6 1.0585 6.2776 2.2713 12 7 1.0993 7.2676 1.4064 13 14 0.2861 6.5372 3.9523 14 1 1.3239 7.0016 4.9074 15 1 -0.7868 7.5590 3.8516 16 1 -0.2929 5.2574 4.4339 17 7 3.6365 0.6647 0.0006 18 1 4.4168 1.2410 -0.0005 19 6 3.6623 -0.6682 0.0024 20 6 2.3435 -1.1228 -0.0003 21 6 2.0223 -2.5582 -0.0036 22 8 0.8997 -2.9744 0.1929 23 6 3.1992 -3.4826 -0.2777 24 6 4.4082 -2.9750 0.5142 25 6 4.0336 -2.8707 1.9939 26 6 5.5654 -3.9634 0.3559 27 6 4.8485 -1.5989 0.0070 28 1 -0.3634 0.0007 1.0276 29 1 -0.3633 0.8896 -0.5144 30 1 -0.3633 -0.8903 -0.5133 31 1 4.7382 3.2797 0.0416 32 1 4.3600 3.7758 1.7087 33 1 4.1035 2.0888 1.2023 34 1 3.0456 5.5282 0.4558 35 1 1.4663 5.0249 -0.1929 36 1 0.7273 8.1322 1.6410 37 1 2.9517 -4.4957 0.0395 38 1 3.4297 -3.4773 -1.3430 39 1 3.7401 -3.8527 2.3646 40 1 4.8918 -2.5101 2.5614 41 1 3.2025 -2.1751 2.1102 42 1 5.8287 -4.0487 -0.6984 43 1 6.4279 -3.6061 0.9184 44 1 5.2638 -4.9398 0.7352 45 1 5.6219 -1.1994 0.6629 46 1 5.2422 -1.6927 -1.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184407745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:19 Heat of formation + Delta-G solvation = -29.918849 kcal Electronic energy + Delta-G solvation = -27499.495687 eV Core-core repulsion = 23775.852678 eV Total energy + Delta-G solvation = -3723.643010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03985 -39.41980 -38.22790 -37.34014 -35.18776 -32.90272 -32.45035 -30.87432 -29.23264 -28.14380 -27.64435 -27.19462 -26.80058 -25.36100 -23.39990 -22.22530 -20.73329 -19.75684 -19.05819 -17.91377 -17.07816 -16.60673 -16.20730 -15.57642 -15.32680 -15.23736 -15.00309 -14.63509 -14.45619 -14.35633 -14.11162 -13.71680 -13.36075 -12.99511 -12.81457 -12.65102 -12.51973 -12.40237 -12.33799 -12.18773 -12.08142 -11.95690 -11.76812 -11.50217 -11.30017 -11.26347 -11.08758 -11.03906 -10.93381 -10.63773 -10.20431 -9.71898 -9.56786 -9.12579 -8.77876 -8.48752 -8.03313 -7.72691 -6.09725 -4.15152 1.36774 1.84744 2.88048 3.14588 3.27441 3.34807 3.39322 3.66178 3.94527 4.11865 4.24102 4.31757 4.40725 4.42381 4.84918 4.85620 5.00677 5.04133 5.14394 5.16465 5.20898 5.23070 5.25866 5.35787 5.39537 5.52074 5.54799 5.55656 5.67912 5.73606 5.79338 5.91113 5.93537 5.95481 6.03968 6.18663 6.34335 6.50073 6.68912 6.91175 7.03105 7.24944 7.34777 7.42193 7.73947 7.86242 8.15486 8.24042 8.80641 8.95680 9.50449 10.98334 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.003337 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.232256 B = 8387.987715 C = 8721.449262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.018 4.018 3 C -0.054 4.054 4 C 0.579 3.421 5 O -0.522 6.522 6 N -0.599 5.599 7 C 0.063 3.937 8 C 0.246 3.754 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.512 5.512 18 H 0.423 0.577 19 C 0.089 3.911 20 C -0.270 4.270 21 C 0.431 3.569 22 O -0.464 6.464 23 C -0.153 4.153 24 C -0.050 4.050 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.047 4.047 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.720 -20.740 -2.985 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C -0.164 4.164 4 C 0.365 3.635 5 O -0.398 6.398 6 N -0.331 5.331 7 C -0.082 4.082 8 C 0.127 3.873 9 C -0.569 4.569 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.111 5.111 18 H 0.267 0.733 19 C -0.036 4.036 20 C -0.278 4.278 21 C 0.309 3.691 22 O -0.340 6.340 23 C -0.191 4.191 24 C -0.050 4.050 25 C -0.211 4.211 26 C -0.199 4.199 27 C -0.085 4.085 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.582 -20.376 -3.136 24.153 hybrid contribution 0.278 0.679 1.033 1.268 sum 12.861 -19.697 -2.103 23.618 Atomic orbital electron populations 1.20439 0.88714 1.03534 1.02681 1.19380 0.96026 0.89388 0.97634 1.20488 0.81982 0.94964 1.18958 1.17013 0.85149 0.82315 0.78986 1.90782 1.20540 1.81239 1.47206 1.48096 1.11772 1.11375 1.61854 1.22035 0.84656 1.00955 1.00560 1.19355 0.95580 0.74151 0.98174 1.21422 1.38891 0.96919 0.99695 0.92380 1.24929 0.95712 0.95776 0.97560 1.69926 1.45756 1.02657 1.34897 0.86483 0.79048 0.78114 0.83742 1.20636 1.20977 1.19777 1.42401 1.08574 1.06182 1.53936 0.73275 1.21137 0.96465 0.83798 1.02206 1.20006 0.91988 0.94890 1.20931 1.21812 0.88469 0.87836 0.70946 1.90530 1.24713 1.80422 1.38291 1.22442 0.94411 1.00073 1.02188 1.20435 0.94826 0.93679 0.96086 1.22057 1.02308 1.02592 0.94110 1.21878 0.97109 0.98698 1.02171 1.20398 0.93124 0.92048 1.02892 0.91317 0.89378 0.91383 0.93411 0.89775 0.92088 0.94837 0.93347 0.92615 0.89029 0.88319 0.92131 0.92095 0.91729 0.92146 0.92042 0.91930 0.89698 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.78 36.01 0.35 -1.37 16 2 C -0.02 -0.31 6.18 -104.51 -0.65 -0.96 16 3 C -0.05 -0.93 6.42 -82.07 -0.53 -1.46 16 4 C 0.58 12.48 7.56 -12.78 -0.10 12.38 16 5 O -0.52 -13.25 14.52 5.21 0.08 -13.18 16 6 N -0.60 -12.55 2.86 -184.45 -0.53 -13.08 16 7 C 0.06 0.92 9.11 59.85 0.55 1.47 16 8 C 0.25 6.34 5.21 -5.20 -0.03 6.31 16 9 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 10 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 13 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 N -0.51 -6.37 4.69 -5.30 -0.02 -6.40 16 18 H 0.42 4.11 5.75 -40.82 -0.23 3.88 16 19 C 0.09 1.00 6.66 -81.45 -0.54 0.45 16 20 C -0.27 -3.87 5.28 -105.18 -0.56 -4.42 16 21 C 0.43 5.75 5.92 -30.01 -0.18 5.57 16 22 O -0.46 -7.71 16.99 5.51 0.09 -7.61 16 23 C -0.15 -1.31 5.01 -27.07 -0.14 -1.45 16 24 C -0.05 -0.34 0.75 -154.34 -0.12 -0.46 16 25 C -0.15 -1.26 7.94 37.16 0.29 -0.96 16 26 C -0.14 -0.65 8.43 37.16 0.31 -0.33 16 27 C -0.05 -0.32 4.96 -27.78 -0.14 -0.46 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.71 6.29 -51.93 -0.33 1.38 16 30 H 0.07 1.13 7.45 -51.93 -0.39 0.74 16 31 H 0.05 0.56 7.96 -51.93 -0.41 0.15 16 32 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 33 H 0.06 0.76 4.69 -51.93 -0.24 0.52 16 34 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.05 1.41 7.35 -51.93 -0.38 1.02 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.06 0.71 6.03 -51.93 -0.31 0.40 16 42 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.44 8.13 -51.93 -0.42 0.01 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -35.14 366.46 -7.93 -43.08 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.91 Total: -0.30 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.88 Total: 0.76 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.18 Total: -45.04 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.14 -7.93 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184407745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.158 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds